Prupe.1G255800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000475
Physical Location & Seq
Reverse (-)
26620767 .. 26621651
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G255800.1

Sequence Viewer

Length: 630 bp
ATGGAGAACCCAAAATTTGCTGAGATTAAGCTATGGTTTCTTGGCACCGTAGGTCTAATCGAATCAGCCATGAAAATCCCATTTAGAAATCCCAATTTCATAGCCTTAACATTGATTACCTCCTTCCCACTATTTTGCATGAGATTAATACATGAATTGCCTTATAATTACCAGCCTAGTTTGATCAAGGAGGCAATATATCAGCTAGGAATTCTTACTCATGATGGAGGCAATATGTCGCCGTTACTTTTACCAGGCTGCCCAACTCGGTTGTCGCGGGGCTTGCATTTGATAGTTTATGGTGTGGCCTTTGCTAAATGGGCAGAGTACAGTGCCTGGTGGAACCTAAGTGTTGTTGTTTCCATTTTAGAGGAGAACAGAGGAATTGAAGCCATTTCAGCCTCATCAAAGTTAACCAAAGGAAATAGACTAAGAGGGCTCATTTGGATGCTTCTGTATTCTGTTTGGAGGTTCAAGTTGCCATCCGTCCTTGCCACATGGACTTTCCCACATATACTTGCATCCTATTACCTTGACACAAGCTTCGTGTGCCTGGGGAAGGTTATCAATTGGGTGGTTCTCACAGTTTATTACTACGATTGCAAAACTGTCACAACAAGGTTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.9

Weight (kDa)

9.28

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 44
AccII CGCG 1 cut(s) 277
AciI CCGC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 14, 210
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 559
AgsI TTSAA 2 cut(s) 389, 475
AjnI CCWGG 3 cut(s) 253, 335, 552
AluBI AGCT 3 cut(s) 31, 205, 543
AluI AGCT 3 cut(s) 31, 205, 543
AlwNI CAGNNNCTG 1 cut(s) 336
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 258
ApoI RAATTY 2 cut(s) 14, 210
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AseI ATTAAT 1 cut(s) 146
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 218, 490
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 3 cut(s) 255, 337, 554
BclI TGATCA 1 cut(s) 183
BfaI CTAG 2 cut(s) 177, 206
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 255, 337, 554
BmiI GGNNCC 2 cut(s) 46, 344
BmrFI CCNGG 3 cut(s) 255, 337, 554
BmsI GCATC 2 cut(s) 438, 530
BsaJI CCNNGG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 559
BseBI CCWGG 3 cut(s) 255, 337, 554
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 3 cut(s) 453, 482, 521
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 559
BsnI GGCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 46, 344
BspT107I GGYRCC 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 3 cut(s) 255, 337, 554
Bst4CI ACNGT 4 cut(s) 49, 332, 586, 610
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 21, 347, 431
BstENI CCTNNNNNAGG 1 cut(s) 557
BstF5I GGATG 3 cut(s) 453, 482, 521
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 4 cut(s) 283, 320, 398, 549
BstNI CCWGG 3 cut(s) 255, 337, 554
BstSCI CCNGG 3 cut(s) 253, 335, 552
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 3 cut(s) 453, 482, 521
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 284
CaiI CAGNNNCTG 1 cut(s) 336
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 1 cut(s) 328
CviAII CATG 5 cut(s) 70, 139, 152, 221, 498
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 21, 347, 431
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 3 cut(s) 253, 335, 552
EcoT38I GRGCYC 1 cut(s) 441
FaeI CATG 5 cut(s) 73, 142, 155, 224, 501
FatI CATG 5 cut(s) 69, 138, 151, 220, 497
FauI CCCGC 1 cut(s) 270
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 3 cut(s) 460, 469, 508
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 2 cut(s) 177, 206
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 308
Hin1II CATG 5 cut(s) 73, 142, 155, 224, 501
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 1 cut(s) 62
HpaI GTTAAC 1 cut(s) 414
Hpy166II GTNNAC 1 cut(s) 414
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 2 cut(s) 133, 553
HpyCH4III ACNGT 4 cut(s) 49, 332, 586, 610
HpyCH4V TGCA 4 cut(s) 138, 286, 521, 603
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 320, 398, 549
HpyF3I CTNAG 3 cut(s) 21, 347, 431
Hsp92II CATG 5 cut(s) 73, 142, 155, 224, 501
Ksp22I TGATCA 1 cut(s) 183
KspAI GTTAAC 1 cut(s) 414
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 7 cut(s) 185, 240, 267, 322, 349, 539, 566
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 438, 530
MaeI CTAG 2 cut(s) 177, 206
MaeIII GTNAC 2 cut(s) 243, 610
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MfeI CAATTG 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 7 cut(s) 14, 94, 155, 166, 210, 384, 568
MnlI CCTC 8 cut(s) 130, 184, 221, 364, 374, 412, 428, 462
MseI TTAA 4 cut(s) 27, 107, 146, 413
MslI CAYNNNNRTG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 255, 337, 554
MunI CAATTG 1 cut(s) 568
MvaI CCWGG 3 cut(s) 255, 337, 554
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 4 cut(s) 283, 320, 398, 549
NdeII GATC 1 cut(s) 183
NlaIII CATG 5 cut(s) 73, 142, 155, 224, 501
NlaIV GGNNCC 2 cut(s) 46, 344
NmuCI GTSAC 1 cut(s) 610
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 146
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 3 cut(s) 253, 335, 552
PspGI CCWGG 3 cut(s) 253, 335, 552
PspN4I GGNNCC 2 cut(s) 46, 344
PstNI CAGNNNCTG 1 cut(s) 336
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 446
SaqAI TTAA 4 cut(s) 27, 107, 146, 413
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 255, 337, 554
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 438, 530
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 7 cut(s) 14, 94, 155, 166, 210, 384, 568
SsiI CCGC 1 cut(s) 277
SspMI CTAG 2 cut(s) 177, 206
StyD4I CCNGG 3 cut(s) 253, 335, 552
TaaI ACNGT 4 cut(s) 49, 332, 586, 610
TaqI TCGA 1 cut(s) 60
TasI AATT 7 cut(s) 14, 94, 155, 166, 210, 384, 568
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 4 cut(s) 27, 107, 146, 413
Tru9I TTAA 4 cut(s) 27, 107, 146, 413
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 86, 88, 168
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 1 cut(s) 337
VspI ATTAAT 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 557
XapI RAATTY 2 cut(s) 14, 210
XspI CTAG 2 cut(s) 177, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.