RLG00000005857

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000475
Physical Location & Seq
Forward (+)
2390847 .. 2392361
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005857

Sequence Viewer

Length: 987 bp
ATGGAGATAGAAAGCAATATGATCATCAAGAATGATAAGTTAGAAGCCTTTGATATTTTCAAAAAAGCCTTCACAATCTCAGCCACAAACATCAAATTCTTGATCTTCACCATTCTCACCTCCCTCCCTCTCTTCTGTTTCTTGGTTTACTATGAACCTTTTCTCCAAAGATTCCTCCTTGAAATCTCAGAAATACTAAAGCCCTCCAAAGATCATTACTTCGGTTATTGGTCTTCAAGACCATTTCAATTGTCAATACCAACTGACATAACAACAAAACTAAACAATGAGTTTCCTGGTGGGTTGGTTCAGATAGCCCTTCTCTATCTGATCCCTCTCCATCTCCTAGAGCTCAGCATCGTCCTTGTGATAGTTGATTTGGCATCAAAGACATACACTAGACAAGAAGAAGAAGAGCCACCATTGACTCTCATGGAAATGGTTCATAAGCCCTTCGACGTAACTAGAGTCCTAGGTACTTTGGTCACATTTGTGTATGTTGTGATCATGTCGTCTAGTTCTCTACTAGGTTTGGTATGGTTAGCAGCAATATATTATGTTGTCACCATGTTCTTTTACGATGTGCTCGTCATCGTGTGGTGTTGGGTTGGATTTGTGGGACTTTTGACACTGTATTTGGGATGGATTGCCGCGTTGAACATGAGTGTTGTGATTTCAATTCTTGAGGGGAGATATGGAACCAAGGCAATTGCTTTAGCCATTTGTTATAGTGTTGGTAACGAGTGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTGCATCTATTTTGGCTGCAAAGGAACTTGGAGTGTTGGCATTTTGACAAAGATTGGCTTGTTCTGCTTGGGAAATGTGGTGAAGTGGGTCGTCTTCACGATTTACTTCTACGATTGCAAGAACCGTGAAATAGAGAGGAAGTTGATGATGAAAGCTAAGAAGAGAGCTGTTGAAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.7

Weight (kDa)

8.35

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 653
AciI CCGC 1 cut(s) 651
AclWI GGATC 1 cut(s) 325
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 478
AgsI TTSAA 7 cut(s) 61, 182, 237, 248, 658, 678, 977
AjnI CCWGG 1 cut(s) 295
AleI CACNNNNGTG 1 cut(s) 491
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 352, 959, 971
AluI AGCT 3 cut(s) 352, 959, 971
Alw21I GWGCWC 2 cut(s) 354, 588
AlwI GGATC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 545, 819
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
Asp700I GAANNNNTTC 2 cut(s) 159, 441
AspA2I CCTAGG 1 cut(s) 472
AsuHPI GGTGA 4 cut(s) 100, 109, 556, 895
AvrII CCTAGG 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 225, 889
Bbv12I GWGCWC 2 cut(s) 354, 588
BbvI GCAGC 2 cut(s) 557, 806
BccI CCATC 2 cut(s) 348, 636
BciT130I CCWGG 1 cut(s) 297
BclI TGATCA 2 cut(s) 21, 504
BfaI CTAG 6 cut(s) 347, 399, 465, 473, 516, 527
BisI GCNGC 3 cut(s) 546, 651, 820
BlnI CCTAGG 1 cut(s) 472
BlpI GCTNAGC 1 cut(s) 353
BlsI GCNGC 3 cut(s) 547, 652, 821
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 700
BmrFI CCNGG 1 cut(s) 297
BmsI GCATC 4 cut(s) 366, 392, 753, 816
BpiI GAAGAC 2 cut(s) 225, 889
Bpu1102I GCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 704
BsaJI CCNNGG 2 cut(s) 472, 702
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 472, 702
BseGI GGATG 1 cut(s) 647
BseMII CTCAG 3 cut(s) 93, 201, 367
BseXI GCAGC 2 cut(s) 557, 806
Bsh1236I CGCG 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 354, 588
BslFI GGGAC 1 cut(s) 633
BsmFI GGGAC 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 354, 588
Bsp143I GATC 5 cut(s) 21, 102, 211, 330, 504
Bsp1720I GCTNAGC 1 cut(s) 353
BspACI CCGC 1 cut(s) 651
BspCNI CTCAG 3 cut(s) 92, 200, 366
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 700
BspPI GGATC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 408
BssECI CCNNGG 2 cut(s) 472, 702
BssMI GATC 5 cut(s) 21, 102, 211, 330, 504
BssT1I CCWWGG 2 cut(s) 472, 702
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 633, 929
Bst6I CTCTTC 3 cut(s) 137, 408, 959
BstDEI CTNAG 4 cut(s) 79, 187, 353, 960
BstF5I GGATG 1 cut(s) 647
BstFNI CGCG 1 cut(s) 653
BstKTI GATC 5 cut(s) 24, 105, 214, 333, 507
BstMBI GATC 5 cut(s) 21, 102, 211, 330, 504
BstMWI GCNNNNNNNGC 1 cut(s) 867
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 557, 806
BstV2I GAAGAC 2 cut(s) 225, 889
BtsCI GGATG 1 cut(s) 647
BtsIMutI CAGTG 1 cut(s) 629
Csp6I GTAC 1 cut(s) 477
CviAII CATG 4 cut(s) 433, 508, 568, 661
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 4 cut(s) 79, 187, 353, 960
DpnI GATC 5 cut(s) 23, 104, 213, 332, 506
DpnII GATC 5 cut(s) 21, 102, 211, 330, 504
Eam1104I CTCTTC 3 cut(s) 137, 408, 959
EarI CTCTTC 3 cut(s) 137, 408, 959
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 472, 702
Eco24I GRGCYC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 472, 702
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 2 cut(s) 472, 702
FaeI CATG 4 cut(s) 436, 511, 571, 664
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 1 cut(s) 633
FatI CATG 4 cut(s) 432, 507, 567, 660
FbaI TGATCA 2 cut(s) 21, 504
Fnu4HI GCNGC 3 cut(s) 546, 651, 820
FokI GGATG 1 cut(s) 654
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 546, 651, 820
FspBI CTAG 6 cut(s) 347, 399, 465, 473, 516, 527
GluI GCNGC 3 cut(s) 546, 651, 820
Hin1II CATG 4 cut(s) 436, 511, 571, 664
HinfI GANTC 3 cut(s) 171, 427, 468
HphI GGTGA 4 cut(s) 100, 109, 556, 895
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 190, 312, 330
Hpy188III TCNNGA 5 cut(s) 28, 100, 237, 683, 901
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 79, 329, 463
HpyCH4III ACNGT 2 cut(s) 633, 929
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 807, 822, 921
HpyF10VI GCNNNNNNNGC 1 cut(s) 867
HpyF3I CTNAG 4 cut(s) 79, 187, 353, 960
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 4 cut(s) 436, 511, 571, 664
Ksp22I TGATCA 2 cut(s) 21, 504
Kzo9I GATC 5 cut(s) 21, 102, 211, 330, 504
LguI GCTCTTC 1 cut(s) 408
LpnPI CCDG 3 cut(s) 282, 309, 817
Lsp1109I GCAGC 2 cut(s) 557, 806
LweI GCATC 4 cut(s) 366, 392, 753, 816
MaeI CTAG 6 cut(s) 347, 399, 465, 473, 516, 527
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 4 cut(s) 460, 484, 562, 737
MalI GATC 5 cut(s) 23, 104, 213, 332, 506
MboI GATC 5 cut(s) 21, 102, 211, 330, 504
MboII GAAGA 8 cut(s) 97, 124, 225, 419, 422, 425, 889, 976
MfeI CAATTG 2 cut(s) 248, 708
MhlI GDGCHC 2 cut(s) 354, 588
MluCI AATT 4 cut(s) 95, 248, 678, 708
MlyI GAGTC 2 cut(s) 421, 477
MmeI TCCRAC 1 cut(s) 589
MroXI GAANNNNTTC 2 cut(s) 159, 441
MseI TTAA 1 cut(s) 985
MslI CAYNNNNRTG 2 cut(s) 437, 491
MspR9I CCNGG 1 cut(s) 297
MunI CAATTG 2 cut(s) 248, 708
MvaI CCWGG 1 cut(s) 297
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 867
NdeII GATC 5 cut(s) 21, 102, 211, 330, 504
NlaIII CATG 4 cut(s) 436, 511, 571, 664
NlaIV GGNNCC 1 cut(s) 700
NmuCI GTSAC 2 cut(s) 484, 562
OliI CACNNNNGTG 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PdmI GAANNNNTTC 2 cut(s) 159, 441
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 3 cut(s) 547, 652, 821
PleI GAGTC 2 cut(s) 421, 476
PpsI GAGTC 2 cut(s) 421, 476
Psp124BI GAGCTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 700
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 2 cut(s) 437, 491
SacI GAGCTC 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 985
SatI GCNGC 3 cut(s) 546, 651, 820
Sau3AI GATC 5 cut(s) 21, 102, 211, 330, 504
SchI GAGTC 2 cut(s) 421, 477
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 2 cut(s) 354, 588
SetI ASST 9 cut(s) 122, 160, 354, 462, 478, 532, 800, 961, 973
SfaNI GCATC 4 cut(s) 366, 392, 753, 816
SmiMI CAYNNNNRTG 2 cut(s) 437, 491
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 4 cut(s) 95, 248, 678, 708
SsiI CCGC 1 cut(s) 651
SspMI CTAG 6 cut(s) 347, 399, 465, 473, 516, 527
SstI GAGCTC 1 cut(s) 354
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 472, 702
TaaI ACNGT 2 cut(s) 633, 929
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 456
TasI AATT 4 cut(s) 95, 248, 678, 708
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 985
Tru9I TTAA 1 cut(s) 985
TscAI CASTG 1 cut(s) 636
TseFI GTSAC 2 cut(s) 484, 562
TseI GCWGC 2 cut(s) 545, 819
Tsp45I GTSAC 2 cut(s) 484, 562
TspDTI ATGAA 3 cut(s) 168, 434, 968
TspRI CASTG 1 cut(s) 636
XapI RAATTY 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 472
XmnI GAANNNNTTC 2 cut(s) 159, 441
XspI CTAG 6 cut(s) 347, 399, 465, 473, 516, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.