pycom16g07760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000475
Physical Location & Seq
Forward (+)
5115227 .. 5116225
999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07760.1

Sequence Viewer

Length: 999 bp
ATGGAAAGCAACCATATCATGGTGAAGCAAAAGTTAAGGTTCTTTGACATACTGAGACAACCTCTTAACTTAACCTACAAGAATACCCACTTTATTCTGCTCACCTTTCTCTCCTCTCTCCCTCTCTTCTGCTTCTTACTCTACTATGAACTATTGCTCCAGAAAACCCTGGTCCGAATCTCGGAATTCGTACGCCATCAACACCTCGATTCCTTCGGGTACGATTGGCAAACGCTGCTCCATACAGCCACAAGAACGATCGTTATATTTTCCAACAACTTGATCCAACTGGGAATTCTCTACCTTGTGCCTTTTCATCTCCTAGAGCTTTGCTCTGTTTATGCGACCGTTGATTCAGCATCAAAGAGCCATCGTCCAGAGCAAAAACCGGCAATCAGAGCCGGTTTGAGAGGCACCGTCGTCACGTCCATCTGGGTTCTTTTCTTCTCAACTTGTACTCTACTTGGCTCAACATGGTTAGCATCAATCTACTATGTAATACTGAGGAACTTAGGGGGTAAATATAATATGTATTTTGGAGTGTTTTATAGGGCAGCTTGTATGGCATTGCTAGCAAAATATTTAGAATGGAGCTCTATATGGAACATGGCAATTGTGATTTCAGTACTGGAGGACAAACATGGAGCCAATGCATTGATGCTCTCAGCTTCTCTAATCAGAAGTAGCGAGCGGCGACAGCATCAAGGACTTGTTATTTCACTCGTCTTCTCTGTTTTCGGACTCGGTTTAAGAGCGTCATGCTGGTTTTTCGCATGCTGTGGAAGGAGGAACGGAGTTGTTGCTCATGCGGGAGTTTTCTGCATCGTGAATGTGATGAAGTGGGTTGTGTTCGTGGTTTACTTCAACAACTGCAGAAAGCAGAGCTTGGGGAGGAAAGGAGGCGATGAAGCTTTCGGAGACAATGGTTTGAGGAATGCCAAAACGGCGTATGAGGTTCGTGTTCCGCCAGACGACGGACTTGATGTCCGGACCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.83

Weight (kDa)

9.43

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 691
AccIII TCCGGA 1 cut(s) 987
AciI CCGC 3 cut(s) 691, 809, 965
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 185, 294
AfaI GTAC 4 cut(s) 192, 221, 457, 627
AfiI CCNNNNNNNGG 3 cut(s) 19, 181, 974
AgsI TTSAA 1 cut(s) 865
AhdI GACNNNNNGTC 1 cut(s) 983
AjiI CACGTC 1 cut(s) 426
AjnI CCWGG 1 cut(s) 168
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 6 cut(s) 328, 557, 594, 668, 885, 911
AluI AGCT 6 cut(s) 328, 557, 594, 668, 885, 911
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 49, 912
AlwI GGATC 1 cut(s) 277
Aor13HI TCCGGA 1 cut(s) 987
ApeKI GCWGC 2 cut(s) 235, 554
ApoI RAATTY 2 cut(s) 185, 294
AspS9I GGNCC 2 cut(s) 172, 990
AsuHPI GGTGA 2 cut(s) 34, 94
AsuNHI GCTAGC 1 cut(s) 571
AvaII GGWCC 2 cut(s) 172, 990
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 596
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 2 cut(s) 222, 566
BccI CCATC 3 cut(s) 204, 378, 437
BceAI ACGGC 1 cut(s) 960
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 49, 912
BfaI CTAG 2 cut(s) 323, 572
BfmI CTRYAG 1 cut(s) 871
BglI GCCNNNNNGGC 1 cut(s) 944
BisI GCNGC 3 cut(s) 236, 555, 692
BlsI GCNGC 3 cut(s) 237, 556, 693
BmcAI AGTACT 1 cut(s) 627
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 172, 990
BmeRI GACNNNNNGTC 1 cut(s) 983
BmgBI CACGTC 1 cut(s) 426
BmgT120I GGNCC 2 cut(s) 172, 990
BmiI GGNNCC 2 cut(s) 415, 646
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 5 cut(s) 368, 491, 648, 709, 831
BmtI GCTAGC 1 cut(s) 575
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 4 cut(s) 46, 78, 317, 349
BpmI CTGGAG 2 cut(s) 143, 650
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 987
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 181, 974
Bse118I RCCGGY 2 cut(s) 388, 401
Bse1I ACTGG 2 cut(s) 294, 633
Bse3DI GCAATG 1 cut(s) 566
BseAI TCCGGA 1 cut(s) 987
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 19, 181, 974
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 3 cut(s) 44, 494, 678
BseNI ACTGG 2 cut(s) 294, 633
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 222, 566
Bsh1285I CGRYCG 2 cut(s) 261, 348
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 2 cut(s) 261, 348
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 3 cut(s) 389, 402, 988
BsiWI CGTACG 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 19, 181, 974
BsmAI GTCTC 2 cut(s) 49, 912
BsmI GAATGC 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 596
Bsp13I TCCGGA 1 cut(s) 987
Bsp143I GATC 2 cut(s) 258, 282
BspACI CCGC 3 cut(s) 691, 809, 965
BspCNI CTCAG 3 cut(s) 45, 495, 677
BspEI TCCGGA 1 cut(s) 987
BspLI GGNNCC 2 cut(s) 415, 646
BspMAI CTGCAG 1 cut(s) 875
BspOI GCTAGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 2 cut(s) 388, 401
BsrI ACTGG 2 cut(s) 294, 633
BssAI RCCGGY 2 cut(s) 388, 401
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 258, 282
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 349, 418
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 573, 689, 775
BstDEI CTNAG 4 cut(s) 53, 503, 511, 664
BstKTI GATC 2 cut(s) 261, 285
BstMAI GTCTC 2 cut(s) 49, 912
BstMBI GATC 2 cut(s) 258, 282
BstMCI CGRYCG 2 cut(s) 261, 348
BstMWI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 697, 944
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 777
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 871
BstV1I GCAGC 2 cut(s) 222, 566
BstV2I GAAGAC 1 cut(s) 718
BtgZI GCGATG 1 cut(s) 918
BtrI CACGTC 1 cut(s) 426
Cac8I GCNNGC 3 cut(s) 573, 689, 775
Cfr10I RCCGGY 2 cut(s) 388, 401
Cfr13I GGNCC 2 cut(s) 172, 990
CseI GACGC 1 cut(s) 744
Csp6I GTAC 4 cut(s) 191, 220, 456, 626
CviAII CATG 7 cut(s) 19, 474, 607, 641, 759, 774, 806
CviQI GTAC 4 cut(s) 191, 220, 456, 626
DdeI CTNAG 4 cut(s) 53, 503, 511, 664
DpnI GATC 2 cut(s) 260, 284
DpnII GATC 2 cut(s) 258, 282
DriI GACNNNNNGTC 1 cut(s) 983
Eam1104I CTCTTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 983
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 954
Ecl136II GAGCTC 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 596
Eco47I GGWCC 2 cut(s) 172, 990
Eco53kI GAGCTC 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 594
EcoRI GAATTC 2 cut(s) 185, 294
EcoRII CCWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 596
FaeI CATG 7 cut(s) 22, 477, 610, 644, 762, 777, 809
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FatI CATG 7 cut(s) 18, 473, 606, 640, 758, 773, 805
FauI CCCGC 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 236, 555, 692
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 3 cut(s) 236, 555, 692
FspBI CTAG 2 cut(s) 323, 572
GluI GCNGC 3 cut(s) 236, 555, 692
GsuI CTGGAG 2 cut(s) 143, 650
HapII CCGG 3 cut(s) 389, 402, 988
HgaI GACGC 1 cut(s) 744
Hin1II CATG 7 cut(s) 22, 477, 610, 644, 762, 777, 809
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 4 cut(s) 177, 209, 353, 741
HpaII CCGG 3 cut(s) 389, 402, 988
HphI GGTGA 2 cut(s) 34, 94
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 6 cut(s) 176, 184, 398, 680, 740, 917
Hpy188III TCNNGA 4 cut(s) 160, 377, 826, 988
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 2 cut(s) 422, 977
HpyAV CCTTC 2 cut(s) 223, 777
HpyCH4III ACNGT 2 cut(s) 349, 418
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 653, 822, 873
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 697, 944
HpyF3I CTNAG 4 cut(s) 53, 503, 511, 664
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 7 cut(s) 22, 477, 610, 644, 762, 777, 809
Kpn2I TCCGGA 1 cut(s) 987
Kzo9I GATC 2 cut(s) 258, 282
LmnI GCTCC 4 cut(s) 162, 243, 591, 644
Lsp1109I GCAGC 2 cut(s) 222, 566
LweI GCATC 5 cut(s) 368, 491, 648, 709, 831
MaeI CTAG 2 cut(s) 323, 572
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 260, 284
MbiI CCGCTC 1 cut(s) 691
MboI GATC 2 cut(s) 258, 282
MboII GAAGA 3 cut(s) 118, 436, 718
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 1 cut(s) 596
MluCI AATT 3 cut(s) 185, 294, 612
MlyI GAGTC 1 cut(s) 735
MmeI TCCRAC 2 cut(s) 297, 310
Mph1103I ATGCAT 1 cut(s) 655
MroI TCCGGA 1 cut(s) 987
MseI TTAA 4 cut(s) 35, 66, 71, 749
MspI CCGG 3 cut(s) 389, 402, 988
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 6 cut(s) 235, 398, 563, 572, 697, 944
NdeII GATC 2 cut(s) 258, 282
NheI GCTAGC 1 cut(s) 571
NlaIII CATG 7 cut(s) 22, 477, 610, 644, 762, 777, 809
NlaIV GGNNCC 2 cut(s) 415, 646
NmuCI GTSAC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 655
NspI RCATGY 1 cut(s) 777
PaeI GCATGC 1 cut(s) 777
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 3 cut(s) 177, 209, 353
Pfl23II CGTACG 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 3 cut(s) 237, 556, 693
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspLI CGTACG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 415, 646
PspPI GGNCC 2 cut(s) 172, 990
PstI CTGCAG 1 cut(s) 875
PvuI CGATCG 1 cut(s) 261
RsaI GTAC 4 cut(s) 192, 221, 457, 627
RsaNI GTAC 4 cut(s) 191, 220, 456, 626
SacI GAGCTC 1 cut(s) 596
SaqAI TTAA 4 cut(s) 35, 66, 71, 749
SatI GCNGC 3 cut(s) 236, 555, 692
Sau3AI GATC 2 cut(s) 258, 282
Sau96I GGNCC 2 cut(s) 172, 990
ScaI AGTACT 1 cut(s) 627
SchI GAGTC 1 cut(s) 735
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 596
SfaNI GCATC 5 cut(s) 368, 491, 648, 709, 831
SfcI CTRYAG 1 cut(s) 871
SinI GGWCC 2 cut(s) 172, 990
SphI GCATGC 1 cut(s) 777
Sse9I AATT 3 cut(s) 185, 294, 612
SsiI CCGC 3 cut(s) 691, 809, 965
SspI AATATT 1 cut(s) 581
SspMI CTAG 2 cut(s) 323, 572
SstI GAGCTC 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 349, 418
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 207
TasI AATT 3 cut(s) 185, 294, 612
TatI WGTACW 2 cut(s) 455, 625
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 3 cut(s) 177, 209, 353
Tru1I TTAA 4 cut(s) 35, 66, 71, 749
Tru9I TTAA 4 cut(s) 35, 66, 71, 749
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 235, 554
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 4 cut(s) 162, 305, 851, 921
TspGWI ACGGA 2 cut(s) 807, 990
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 172, 990
XapI RAATTY 2 cut(s) 185, 294
XceI RCATGY 1 cut(s) 777
XspI CTAG 2 cut(s) 323, 572
ZrmI AGTACT 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.