FvH4_4g34720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000475
Physical Location & Seq
Reverse (-)
32334696 .. 32335133
438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34720.t1

Sequence Viewer

Length: 438 bp
ATGAAGAATCCGATAGAACTTCAGCAGACCAAGCCCTGGCTTCTTGGCACCATTGGTATAATGGGATCAGCCATGAAAGTCCCCTTTGCAAATCCCAATTTCATAACCTTCACTTTGATCACCTCCTTTCCTCTTTTCTGCATGGTGATGTTCATACCAAGATCACCTTATAAATTTCTGCAGCCTGGTTTCATCATGGAGGCATCATCGGAGCTACGGCGGCTCATTACTCAGCCCAACACTCTCACATCTTCTATACCATGGTTTCAAGATTGGACAACCCGAGTACTCGATTCGTTGCTTTTCGACATTCTCAAGTTGCTTGTTGCACTCACATCTATCCACTCTGCTTCCAGAGTCTATACTACTAAAGCTGGCAAGTCAATGAGTCTCCGAGAGCTTGTTCAGACCTCGATCACCAAAACTCGGTGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

10.17

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 36
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 36, 426
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 2 cut(s) 35, 184
AluBI AGCT 3 cut(s) 214, 374, 400
AluI AGCT 3 cut(s) 214, 374, 400
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 112, 156, 157, 409
AvaI CYCGRG 1 cut(s) 282
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 37, 186
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 182, 221
BlsI GCNGC 2 cut(s) 183, 222
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 37, 186
BmeT110I CYCGRG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 37, 186
BmsI GCATC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 35, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 426
BseBI CCWGG 2 cut(s) 37, 186
BseDI CCNNGG 2 cut(s) 35, 260
BseLI CCNNNNNNNGG 2 cut(s) 36, 426
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 36, 426
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 282
Bsp143I GATC 4 cut(s) 65, 117, 161, 414
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 35, 260
BssMI GATC 4 cut(s) 65, 117, 161, 414
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 2 cut(s) 37, 186
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 260
BstKTI GATC 4 cut(s) 68, 120, 164, 417
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 4 cut(s) 65, 117, 161, 414
BstMWI GCNNNNNNNGC 2 cut(s) 31, 220
BstNI CCWGG 2 cut(s) 37, 186
BstSCI CCNGG 2 cut(s) 35, 184
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 287
CviAII CATG 4 cut(s) 73, 142, 196, 261
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 67, 119, 163, 416
DpnII GATC 4 cut(s) 65, 117, 161, 414
Eco130I CCWWGG 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 5
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 35, 184
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 76, 145, 199, 264
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 65
FatI CATG 4 cut(s) 72, 141, 195, 260
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 182, 221
Fsp4HI GCNGC 2 cut(s) 182, 221
GluI GCNGC 2 cut(s) 182, 221
Hin1II CATG 4 cut(s) 76, 145, 199, 264
HinfI GANTC 4 cut(s) 7, 293, 357, 388
HphI GGTGA 4 cut(s) 112, 156, 157, 409
Hpy188I TCNGA 4 cut(s) 12, 211, 395, 408
Hpy188III TCNNGA 2 cut(s) 269, 354
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 89, 141, 181, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 220
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 4 cut(s) 76, 145, 199, 264
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 4 cut(s) 65, 117, 161, 414
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 22, 49, 171, 198, 360, 367
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 212
MalI GATC 4 cut(s) 67, 119, 163, 416
MboI GATC 4 cut(s) 65, 117, 161, 414
MboII GAAGA 2 cut(s) 16, 243
MluCI AATT 2 cut(s) 97, 173
MlyI GAGTC 2 cut(s) 366, 397
MnlI CCTC 4 cut(s) 133, 141, 193, 421
MslI CAYNNNNRTG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 37, 186
MvaI CCWGG 2 cut(s) 37, 186
MwoI GCNNNNNNNGC 2 cut(s) 31, 220
NcoI CCATGG 1 cut(s) 260
NdeII GATC 4 cut(s) 65, 117, 161, 414
NlaIII CATG 4 cut(s) 76, 145, 199, 264
NlaIV GGNNCC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 7, 293
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 2 cut(s) 183, 222
PleI GAGTC 2 cut(s) 365, 396
PpsI GAGTC 2 cut(s) 365, 396
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 35, 184
PspGI CCWGG 2 cut(s) 35, 184
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 183
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 146
SatI GCNGC 2 cut(s) 182, 221
Sau3AI GATC 4 cut(s) 65, 117, 161, 414
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 2 cut(s) 366, 397
ScrFI CCNGG 2 cut(s) 37, 186
SetI ASST 7 cut(s) 110, 125, 169, 216, 376, 402, 413
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 97, 173
SsiI CCGC 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 35, 184
StyI CCWWGG 1 cut(s) 260
TaqI TCGA 3 cut(s) 291, 306, 413
TasI AATT 2 cut(s) 97, 173
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 2 cut(s) 7, 293
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 17, 89, 91, 142, 181
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.