Rh4DG417300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62607882 .. 62608490
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG417300.1

Sequence Viewer

Length: 438 bp
ATGGTGTTACCAAAATTGCCATTCGAGCCTGCTAGAATCAGGGAGGCATTAGTTAAGCTAGAACAGCTTAATTCCCACTCCAACAAACTCATATCTGTTACCTCATGGCTTCTAAATGACACCATTAGAGTTGGCACGGTTCAACTTTGCAAACTAATCACCTTCCTGGCCACGGTCACTCTTATTGATTATGCTTCAACAATATATAAGGGCGGAGCTGGGAGGTCAGTGGGTCTCAGAGATCTTTTACGAAACAATTTCAGAAATAGGGGGGATAGCTCTATGTTGGCATACTTAGTCATGTCCTGGTTCTCAAAGATGTCTTTGGACGCTGTTCTCCTATATGGTACTGCAGGTCCGTTGGGTTCATTAAGAAATGAGTGGGCGCCGCCTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTCGTGCACCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.19

Weight (kDa)

9.84

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 2 cut(s) 213, 389
AcoI YGGCCR 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 143, 198
AjnI CCWGG 2 cut(s) 165, 305
AluBI AGCT 4 cut(s) 58, 67, 218, 279
AluI AGCT 4 cut(s) 58, 67, 218, 279
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 239, 424
Alw44I GTGCAC 1 cut(s) 428
AoxI GGCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 432
BalI TGGCCA 1 cut(s) 170
BanI GGYRCC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 167, 307
BcoDI GTCTC 2 cut(s) 239, 424
BfaI CTAG 3 cut(s) 33, 59, 436
BfmI CTRYAG 1 cut(s) 351
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 241
BisI GCNGC 1 cut(s) 389
BlsI GCNGC 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 167, 307
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 2 cut(s) 167, 307
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 2 cut(s) 239, 424
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseBI CCWGG 2 cut(s) 167, 307
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 250, 422
BseSI GKGCMC 1 cut(s) 432
BseYI CCCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 239, 424
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 2 cut(s) 239, 424
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 213, 389
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 249, 421
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 385
BspTNI GGTCTC 2 cut(s) 239, 424
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 386
Bst2UI CCWGG 2 cut(s) 167, 307
Bst4CI ACNGT 2 cut(s) 139, 175
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 236, 295, 408
BstDSI CCRYGG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 239, 424
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 25, 64
BstNI CCWGG 2 cut(s) 167, 307
BstSCI CCNGG 2 cut(s) 165, 305
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 105, 301
CviJI RGCY 7 cut(s) 28, 58, 67, 109, 170, 218, 279
CviKI_1 RGCY 7 cut(s) 28, 58, 67, 109, 170, 218, 279
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 3 cut(s) 236, 295, 408
DinI GGCGCC 1 cut(s) 387
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 168
EciI GGCGGA 1 cut(s) 228
Eco31I GGTCTC 2 cut(s) 239, 424
Eco47I GGWCC 1 cut(s) 356
EcoRII CCWGG 2 cut(s) 165, 305
EgeI GGCGCC 1 cut(s) 387
EheI GGCGCC 1 cut(s) 387
FaeI CATG 2 cut(s) 108, 304
FatI CATG 2 cut(s) 104, 300
Fnu4HI GCNGC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 389
FspBI CTAG 3 cut(s) 33, 59, 436
GlaI GCGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 389
GsaI CCCAGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 1 cut(s) 170
HgaI GACGC 1 cut(s) 338
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 2 cut(s) 108, 304
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HinfI GANTC 1 cut(s) 36
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 239, 263
Hpy8I GTNNAC 1 cut(s) 430
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 139, 175
HpyCH4V TGCA 3 cut(s) 150, 353, 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 64
HpyF3I CTNAG 3 cut(s) 236, 295, 408
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 2 cut(s) 108, 304
HspAI GCGC 1 cut(s) 386
KasI GGCGCC 1 cut(s) 385
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 9 cut(s) 25, 42, 152, 179, 204, 292, 319, 339, 395
MaeI CTAG 3 cut(s) 33, 59, 436
MaeIII GTNAC 3 cut(s) 6, 97, 175
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 394
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 14, 70, 256
MluNI TGGCCA 1 cut(s) 170
Mly113I GGCGCC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 37, 112, 216, 402
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 54, 69, 371
Msp20I TGGCCA 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 167, 307
MvaI CCWGG 2 cut(s) 167, 307
MwoI GCNNNNNNNGC 2 cut(s) 25, 64
NarI GGCGCC 1 cut(s) 386
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 108, 304
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 390
PluTI GGCGCC 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 165, 305
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 2 cut(s) 165, 305
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 54, 69, 371
SatI GCNGC 1 cut(s) 389
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 167, 307
SduI GDGCHC 1 cut(s) 432
SetI ASST 9 cut(s) 60, 69, 104, 164, 220, 227, 281, 358, 414
SfcI CTRYAG 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 387
SinI GGWCC 1 cut(s) 356
Sse9I AATT 3 cut(s) 14, 70, 256
SsiI CCGC 2 cut(s) 213, 389
SspDI GGCGCC 1 cut(s) 385
SspMI CTAG 3 cut(s) 33, 59, 436
StyD4I CCNGG 2 cut(s) 165, 305
TaaI ACNGT 2 cut(s) 139, 175
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 14, 70, 256
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 3 cut(s) 54, 69, 371
Tru9I TTAA 3 cut(s) 54, 69, 371
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 234
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 356
XspI CTAG 3 cut(s) 33, 59, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.