Rroxscaffold_5G00384660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63922432 .. 63930084
7653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384660.1

Sequence Viewer

Length: 891 bp
ATGAAGAATCCGATAGAACTTGAGCAGATCATGCCATGGTTTCTTGGCACCATTGGTATAATGGGATCAGCCATGAAAATCCTTTTGGGAAATCTCAATTTCATAACCTTCAATTTGATCGCCTCCTTTCCTCTTTTCTGCATGATGAAGTTCATACCAAGATCACCTTATGACTTTTGGCAGCCTAGTTTCATCATGGAGGCATCATTGGAGCTAAGGCGGCTCATTACTCACCCTGGCACTCTGAAATCTTCTATACCTTCGATTCAAGATTGGACAAGACGAGTACTCGATGCGTGGCTTTTTGACATGCTCAGGTTCCTCGTTGCACTCACATCTATCTACTCTGCTTCAATAATCTATACGACTAGTGTTGGCAAGTCAATGCGTCTCCGATATCTTGTTCAGAGTTCGATCACCAAAATTCGGTGGCCTAAGCCTATAATAACATATTTTTCTCTGTCCCTAATTTCCTCTATCTTTTTAGAAGGTTTTAGACATTGGTTAAGGGCAAGGCCTACAAATCTGTACCTGATTATCCTACAATTCATCGTTCCATTCGTGGCCGTTGCTAAATGGTTGGAGTTCAAAGCCTTGACGAATGTAGCTGTTGTTGTTTCCGTTTTAGAAGACAATATCAGAGGGCCTTTTGAAGCCTACTCAACCTCGTCGGAGCTAAGCAGAGGAAATAGACTTAGCGGGTTGGTTTTGATAATTCTCCATTCTAGTGTGCTCTCAGGTTTGAAAAATCTCTTTCAGTGGAGTTTTACCAGTATACCTGCATATCATTTCATTCAAAAAATCCTCTACTGTTTGCAATGGATTATGTTTTGGGTGGTTTTCACTATTTATTACTACGACTGTAAGAATCGTCACAAAAGCTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

34.4

Weight (kDa)

9.84

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 775
AciI CCGC 2 cut(s) 220, 699
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 423
AfaI GTAC 2 cut(s) 288, 530
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 7 cut(s) 112, 269, 354, 589, 653, 745, 797
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 214, 608, 676, 882
AluI AGCT 4 cut(s) 214, 608, 676, 882
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 73
AoxI GGCC 4 cut(s) 431, 515, 564, 644
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 3 cut(s) 156, 224, 409
BanI GGYRCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 3 cut(s) 186, 369, 726
BfuAI ACCTGC 1 cut(s) 787
BisI GCNGC 2 cut(s) 182, 221
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 2 cut(s) 183, 222
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 49, 320
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 212, 283
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 3 cut(s) 215, 314, 435
Bpu1102I GCTNAGC 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 35, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 824
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 35, 235
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 824
BseMII CTCAG 2 cut(s) 328, 750
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 4 cut(s) 433, 517, 566, 646
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 735
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 4 cut(s) 433, 517, 566, 646
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 5 cut(s) 27, 65, 117, 161, 414
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 2 cut(s) 220, 699
BspANI GGCC 4 cut(s) 433, 517, 566, 646
BspCNI CTCAG 2 cut(s) 327, 749
BspLI GGNNCC 2 cut(s) 49, 320
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 824
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 2 cut(s) 35, 235
BssMI GATC 5 cut(s) 27, 65, 117, 161, 414
BssNAI GTATAC 1 cut(s) 776
BssT1I CCWWGG 1 cut(s) 35
Bst1107I GTATAC 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 812, 863
BstAPI GCANNNNNTGC 1 cut(s) 31
BstDEI CTNAG 6 cut(s) 215, 314, 435, 677, 695, 736
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 5 cut(s) 30, 68, 120, 164, 417
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 27, 65, 117, 161, 414
BstMWI GCNNNNNNNGC 2 cut(s) 31, 220
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 636
BstZ17I GTATAC 1 cut(s) 776
BsuRI GGCC 4 cut(s) 433, 517, 566, 646
BtgI CCRYGG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 764
BveI ACCTGC 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 287, 529
CviAII CATG 6 cut(s) 31, 36, 73, 142, 196, 310
CviQI GTAC 2 cut(s) 287, 529
DdeI CTNAG 6 cut(s) 215, 314, 435, 677, 695, 736
DpnI GATC 5 cut(s) 29, 67, 119, 163, 416
DpnII GATC 5 cut(s) 27, 65, 117, 161, 414
EaeI YGGCCR 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 517
Eco32I GATATC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 6 cut(s) 34, 39, 76, 145, 199, 313
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 448
FatI CATG 6 cut(s) 30, 35, 72, 141, 195, 309
FauI CCCGC 1 cut(s) 692
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 2 cut(s) 182, 221
Fsp4HI GCNGC 2 cut(s) 182, 221
FspBI CTAG 3 cut(s) 186, 369, 726
GluI GCNGC 2 cut(s) 182, 221
HaeIII GGCC 4 cut(s) 433, 517, 566, 646
HgaI GACGC 1 cut(s) 377
Hin1II CATG 6 cut(s) 34, 39, 76, 145, 199, 313
HindIII AAGCTT 1 cut(s) 880
HinfI GANTC 3 cut(s) 7, 265, 868
HphI GGTGA 3 cut(s) 156, 224, 409
Hpy166II GTNNAC 1 cut(s) 776
Hpy188I TCNGA 6 cut(s) 12, 246, 395, 408, 641, 673
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 776
Hpy99I CGWCG 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 118, 270, 482
HpyCH4III ACNGT 2 cut(s) 812, 863
HpyCH4V TGCA 4 cut(s) 141, 329, 782, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 220
HpyF3I CTNAG 6 cut(s) 215, 314, 435, 677, 695, 736
Hsp92II CATG 6 cut(s) 34, 39, 76, 145, 199, 313
Kzo9I GATC 5 cut(s) 27, 65, 117, 161, 414
LmnI GCTCC 2 cut(s) 211, 673
LpnPI CCDG 7 cut(s) 222, 249, 301, 545, 723, 784, 792
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 212, 283
MaeI CTAG 3 cut(s) 186, 369, 726
MaeIII GTNAC 1 cut(s) 872
MalI GATC 5 cut(s) 29, 67, 119, 163, 416
MboI GATC 5 cut(s) 27, 65, 117, 161, 414
MboII GAAGA 3 cut(s) 16, 243, 641
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 6 cut(s) 97, 112, 423, 468, 545, 714
MmeI TCCRAC 2 cut(s) 561, 651
MnlI CCTC 9 cut(s) 133, 141, 193, 332, 484, 635, 676, 677, 815
MseI TTAA 1 cut(s) 506
MslI CAYNNNNRTG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 31, 220
NcoI CCATGG 1 cut(s) 35
NdeII GATC 5 cut(s) 27, 65, 117, 161, 414
NlaIII CATG 6 cut(s) 34, 39, 76, 145, 199, 313
NlaIV GGNNCC 2 cut(s) 49, 320
NmuCI GTSAC 1 cut(s) 872
NspI RCATGY 1 cut(s) 313
PceI AGGCCT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PfeI GAWTC 3 cut(s) 7, 265, 868
PkrI GCNGC 2 cut(s) 183, 222
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 49, 320
PspPI GGNCC 1 cut(s) 644
RsaI GTAC 2 cut(s) 288, 530
RsaNI GTAC 2 cut(s) 287, 529
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 2 cut(s) 182, 221
Sau3AI GATC 5 cut(s) 27, 65, 117, 161, 414
Sau96I GGNCC 1 cut(s) 644
ScaI AGTACT 1 cut(s) 288
ScrFI CCNGG 1 cut(s) 237
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 2 cut(s) 212, 283
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 6 cut(s) 97, 112, 423, 468, 545, 714
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 2 cut(s) 220, 699
SspMI CTAG 3 cut(s) 186, 369, 726
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 812, 863
TaqI TCGA 3 cut(s) 263, 291, 413
TasI AATT 6 cut(s) 97, 112, 423, 468, 545, 714
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 3 cut(s) 7, 265, 868
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TscAI CASTG 1 cut(s) 764
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 8 cut(s) 17, 89, 91, 142, 161, 181, 538, 781
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 1 cut(s) 764
XapI RAATTY 1 cut(s) 423
XceI RCATGY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 775
XspI CTAG 3 cut(s) 186, 369, 726
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.