MD16G1090500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000475
Physical Location & Seq
Forward (+)
6293539 .. 6294063
525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1090500.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGTAAATAAACCCTTTTCTAACGTAACGCTCAAAGGCATATCTCTATGTTCTCTTCTTATCAACTTCTACTTTACTTGGACTAATATGTACACCAACAACCTACACTGTTATTTTGAGGAACTTTGTGTGCCATGTATTGTTTGCTGTGCTGTGTTTTCTGGCATTGGTGGCGCTTCAGCACGGTATCTGGCGCTGAGTGCGGTGTGGAACGTGAGTCTTGTGGCTTCGATATTGGATGGGGTTCATGGAACTAAAGCATTAGCTCAGGCTATTTCTTACAGCAGAGGTAACAAGTGGCAGGGGCTTCGTTTGATGCTTGTTTTCTTTGCTTGGGGATTAAGTTTAAGGTTGCCATGTTTGTACTTTGGCATGCATGAAAAGGAGAATGGGATCATTGCACAGATTAGCTTGTTCTGCTTGGGGAATGTGTTGAAGTGTGGGTTGTCTGCATGGTATATTTCTACGATTGCAAGAATCGAGCGTTCGATGAGAACAATGAATGTGTCAAATGTGTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.33

Weight (kDa)

9.04

Isoelectric Point (pI)

21.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 92, 365
AgsI TTSAA 1 cut(s) 436
AluBI AGCT 2 cut(s) 266, 411
AluI AGCT 2 cut(s) 266, 411
AlwI GGATC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 176, 196
BccI CCATC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BfoI RGCGCY 2 cut(s) 177, 197
BmsI GCATC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 188, 281
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 189, 280
BspPI GGATC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 90
BssMI GATC 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 110, 186
Bst6I CTCTTC 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 197, 267
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 2 cut(s) 177, 197
BstHHI GCGC 2 cut(s) 176, 196
BstKTI GATC 1 cut(s) 396
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 171, 200, 417
BstNSI RCATGY 1 cut(s) 376
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 374
CfoI GCGC 2 cut(s) 176, 196
Csp6I GTAC 2 cut(s) 91, 364
CviAII CATG 6 cut(s) 135, 248, 357, 373, 377, 453
CviJI RGCY 5 cut(s) 227, 266, 272, 307, 411
CviKI_1 RGCY 5 cut(s) 227, 266, 272, 307, 411
CviQI GTAC 2 cut(s) 91, 364
DdeI CTNAG 2 cut(s) 197, 267
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 6 cut(s) 138, 251, 360, 376, 380, 456
FatI CATG 6 cut(s) 134, 247, 356, 372, 376, 452
FokI GGATG 1 cut(s) 251
GlaI GCGC 2 cut(s) 175, 195
HaeII RGCGCY 2 cut(s) 177, 197
HhaI GCGC 2 cut(s) 176, 196
Hin1II CATG 6 cut(s) 138, 251, 360, 376, 380, 456
Hin6I GCGC 2 cut(s) 174, 194
HinP1I GCGC 2 cut(s) 174, 194
HinfI GANTC 2 cut(s) 217, 477
Hpy166II GTNNAC 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 110, 186
HpyCH4IV ACGT 2 cut(s) 24, 213
HpyCH4V TGCA 4 cut(s) 376, 401, 452, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 200, 417
HpyF3I CTNAG 2 cut(s) 197, 267
HpySE526I ACGT 2 cut(s) 24, 213
Hsp92II CATG 6 cut(s) 138, 251, 360, 376, 380, 456
HspAI GCGC 2 cut(s) 174, 194
Kzo9I GATC 1 cut(s) 393
LpnPI CCDG 4 cut(s) 147, 176, 254, 287
LweI GCATC 1 cut(s) 306
MaeII ACGT 2 cut(s) 24, 213
MaeIII GTNAC 2 cut(s) 25, 290
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 2 cut(s) 112, 281
Mph1103I ATGCAT 1 cut(s) 378
MseI TTAA 2 cut(s) 341, 347
MwoI GCNNNNNNNGC 3 cut(s) 171, 200, 417
NdeII GATC 1 cut(s) 393
NlaIII CATG 6 cut(s) 138, 251, 360, 376, 380, 456
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 477
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
RsaI GTAC 2 cut(s) 92, 365
RsaNI GTAC 2 cut(s) 91, 364
SaqAI TTAA 2 cut(s) 341, 347
Sau3AI GATC 1 cut(s) 393
SchI GAGTC 1 cut(s) 226
SetI ASST 7 cut(s) 27, 105, 216, 268, 292, 353, 413
SfaNI GCATC 1 cut(s) 306
SphI GCATGC 1 cut(s) 376
SsiI CCGC 1 cut(s) 203
TaaI ACNGT 2 cut(s) 110, 186
TaiI ACGT 2 cut(s) 27, 216
TaqI TCGA 3 cut(s) 230, 480, 488
TatI WGTACW 2 cut(s) 90, 363
TfiI GAWTC 1 cut(s) 477
Tru1I TTAA 2 cut(s) 341, 347
Tru9I TTAA 2 cut(s) 341, 347
TscAI CASTG 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 236, 393, 515
TspRI CASTG 1 cut(s) 113
XceI RCATGY 1 cut(s) 376
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.