Rroxscaffold_5G00384670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63930563 .. 63931567
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384670.1

Sequence Viewer

Length: 933 bp
ATGGAGATAGAAAGCAATATGATCATCAAGAATGATAAGTTAGAAGCCTTTGATATTCTCAAAAAAGCCTTCACAATCTCAGCCACAAACATCAAATTCTTGATCTTCACCATTCTCACCTCCCTCCCTCTCTTCTGTTTCTTGGTTTACTATGAACCTTTTCTCCAAAGATTCATCCTTGAAATCTCAGAAATACTAAAGCCCTCCAAAGATGATTACTTCGGTTATTTATCTTCAAGACCATTTCAATTGCCAATACCAAGTTTACCAACTGACATGACAACAAAACTAAACAATGAGTTTCCTGGTGGATTGGTTCAGATAGCCCTTCTCTATCTGATCCCTCTCCATCTCCTAGAGCTCAGCACCGTTCTTGTGATTGTTGATTTGGCATCAAAGACATATACTACACAAGAAGAAGAAGAGCCACCATTGACTCTCATGGAAATGGTTCATAAGCCCTTCCTTCGACGTTTTGGTATGGTTAGCAGTAATATATTATGTTGTCACCATGTTTCTTTTACGATGTGCTCGTCATCATGTGGTGTTGGGTGGGGATTTGTGGGACTTTTGACACTGTATTTGGGATGGATTGCCGCGTTGAACATGAGTGTTGTGATTTCAATTCTTGAGGGGAGTTATGGAACCAAGGCAATTGCTTTAGCCATTTGTTATAGTGTTGGTAACGAGTGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTGCATCTATTTTGGCTGCAAAGGAACTTGGAGTGTTGGCATTTTGACACAGATTGGCTTCTCCTGCTTGGGAAATGTGGTGAAGTGGGTCGTCTTCACGATTTACTTCTACGATTTCAAGAACCGTGAAATAGAGAGGAAGTTGATGATGAAAGCTAAGAAGAGAGCTGTTGAAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

35.23

Weight (kDa)

8.01

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 599
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 95
AgsI TTSAA 7 cut(s) 182, 237, 248, 604, 624, 868, 923
AjnI CCWGG 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 3 cut(s) 361, 905, 917
AluI AGCT 3 cut(s) 361, 905, 917
Alw21I GWGCWC 2 cut(s) 363, 533
AlwI GGATC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 765
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
Asp700I GAANNNNTTC 2 cut(s) 159, 450
AsuHPI GGTGA 4 cut(s) 100, 109, 500, 841
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 835
Bbv12I GWGCWC 2 cut(s) 363, 533
BbvI GCAGC 1 cut(s) 752
BccI CCATC 2 cut(s) 357, 582
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 21
BfaI CTAG 1 cut(s) 356
BisI GCNGC 2 cut(s) 597, 766
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 2 cut(s) 598, 767
Bme1390I CCNGG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 401, 699, 762
BpiI GAAGAC 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 2 cut(s) 174, 593
BseMII CTCAG 3 cut(s) 93, 201, 376
BseXI GCAGC 1 cut(s) 752
Bsh1236I CGCG 1 cut(s) 599
BsiHKAI GWGCWC 2 cut(s) 363, 533
BslFI GGGAC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 363, 533
Bsp143I GATC 3 cut(s) 21, 102, 339
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 1 cut(s) 597
BspCNI CTCAG 3 cut(s) 92, 200, 375
BspFNI CGCG 1 cut(s) 599
BspLI GGNNCC 1 cut(s) 646
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 417
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 3 cut(s) 21, 102, 339
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 370, 579, 875
Bst6I CTCTTC 3 cut(s) 137, 417, 905
BstDEI CTNAG 4 cut(s) 79, 187, 362, 906
BstF5I GGATG 2 cut(s) 174, 593
BstFNI CGCG 1 cut(s) 599
BstKTI GATC 3 cut(s) 24, 105, 342
BstMBI GATC 3 cut(s) 21, 102, 339
BstMWI GCNNNNNNNGC 1 cut(s) 813
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 835
BtsCI GGATG 2 cut(s) 174, 593
BtsIMutI CAGTG 1 cut(s) 575
CviAII CATG 5 cut(s) 277, 442, 512, 540, 607
DdeI CTNAG 4 cut(s) 79, 187, 362, 906
DpnI GATC 3 cut(s) 23, 104, 341
DpnII GATC 3 cut(s) 21, 102, 339
Eam1104I CTCTTC 3 cut(s) 137, 417, 905
EarI CTCTTC 3 cut(s) 137, 417, 905
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 648
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 5 cut(s) 280, 445, 515, 543, 610
FaqI GGGAC 1 cut(s) 579
FatI CATG 5 cut(s) 276, 441, 511, 539, 606
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 597, 766
FokI GGATG 2 cut(s) 161, 600
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 597, 766
FspBI CTAG 1 cut(s) 356
GluI GCNGC 2 cut(s) 597, 766
Hin1II CATG 5 cut(s) 280, 445, 515, 543, 610
HinfI GANTC 2 cut(s) 171, 436
HphI GGTGA 4 cut(s) 100, 109, 500, 841
Hpy166II GTNNAC 2 cut(s) 148, 266
Hpy188I TCNGA 3 cut(s) 190, 321, 339
Hpy188III TCNNGA 6 cut(s) 28, 100, 237, 629, 847, 868
Hpy8I GTNNAC 2 cut(s) 148, 266
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 4 cut(s) 79, 338, 472, 476
HpyCH4III ACNGT 3 cut(s) 370, 579, 875
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 2 cut(s) 753, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 813
HpyF3I CTNAG 4 cut(s) 79, 187, 362, 906
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 5 cut(s) 280, 445, 515, 543, 610
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 21, 102, 339
LguI GCTCTTC 1 cut(s) 417
LpnPI CCDG 4 cut(s) 291, 318, 763, 826
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 3 cut(s) 401, 699, 762
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 2 cut(s) 506, 683
MalI GATC 3 cut(s) 23, 104, 341
MboI GATC 3 cut(s) 21, 102, 339
MboII GAAGA 8 cut(s) 97, 124, 225, 428, 431, 434, 835, 922
MfeI CAATTG 2 cut(s) 248, 654
MhlI GDGCHC 2 cut(s) 363, 533
MluCI AATT 4 cut(s) 95, 248, 624, 654
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 9 cut(s) 130, 134, 138, 214, 354, 625, 689, 735, 879
MroXI GAANNNNTTC 2 cut(s) 159, 450
MseI TTAA 1 cut(s) 931
MslI CAYNNNNRTG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 306
MunI CAATTG 2 cut(s) 248, 654
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 813
NdeII GATC 3 cut(s) 21, 102, 339
NlaIII CATG 5 cut(s) 280, 445, 515, 543, 610
NlaIV GGNNCC 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PdmI GAANNNNTTC 2 cut(s) 159, 450
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 2 cut(s) 598, 767
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 931
SatI GCNGC 2 cut(s) 597, 766
Sau3AI GATC 3 cut(s) 21, 102, 339
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 363, 533
SetI ASST 7 cut(s) 122, 160, 363, 475, 746, 907, 919
SfaNI GCATC 3 cut(s) 401, 699, 762
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 95, 248, 624, 654
SsiI CCGC 1 cut(s) 597
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 3 cut(s) 370, 579, 875
TaiI ACGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 469
TasI AATT 4 cut(s) 95, 248, 624, 654
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 931
Tru9I TTAA 1 cut(s) 931
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 1 cut(s) 765
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 4 cut(s) 163, 168, 443, 914
TspRI CASTG 1 cut(s) 582
XapI RAATTY 1 cut(s) 95
XmnI GAANNNNTTC 2 cut(s) 159, 450
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.