Rh3DG231000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000475
Physical Location & Seq
Forward (+)
21921280 .. 21922026
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG231000.1

Sequence Viewer

Length: 747 bp
ATGTTTAATTGGTCATTACCATTTGATGCAACCCCGGAATGGAACAAAGGGTTTCCTGGTGAGTTGATTCAACAAGCACTTCTCTATCTGGTGCCTTTCCATCTCCTAGAGCTCATCACCATGCTTGCAATTGCTAATTTGGCCTCGAAGATATATGAAGAAGAGAGACCAATGAGTCTGAAGGAGATGGTGCATACACAACCTTTCGACAAATCCGGACTGAAAGCCTTTTTCATCACATCTGTCTATGTTCTCGTCTTGTCCACCTGTAGTGAGCTACTTGGATTTGTATGGTCAGCTGCAAGCTACTCTTTTGCATTCAGGTACTTTAACCATGATATACTCTTAGCTTTATGGTGTTGTATAGCAAGTGTAGCACTGCTAACAATGTATTTGGCATGGAATGTGATATGGAATATGAGTATTGTGATTTCGATATTGGAGGGGATACATGGAACCAGGGCATTCGGTCTAGTAACGTATCTAAGCACTGGCAACGAGTGGGGAGGGTTTCTTTTGATGTTGATTTTCTTTGCTTGGGAAGTAACTTTAAGGTTGCCATGTCTCTATTTTGGCTGCAAAGGAAGGGGGAATGAAATGTTTGTTGCACAGAGTAGCTTGTTGTGCTTAGGAAATGTGTTCAAGTTGGTCGTCTTTGTTATATATTTCCACGATTGCAAGAACCGGGTTTTAGAAAAGAGGTTGATGATCAAGGCTAAAAGAGCTGGTTATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.33

Weight (kDa)

8.08

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 91
AccIII TCCGGA 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 39
AgsI TTSAA 2 cut(s) 71, 643
AjnI CCWGG 2 cut(s) 55, 458
AluBI AGCT 8 cut(s) 112, 277, 299, 306, 350, 618, 725, 738
AluI AGCT 8 cut(s) 112, 277, 299, 306, 350, 618, 725, 738
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 160, 569
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 299, 576
AsuC2I CCSGG 2 cut(s) 35, 686
AsuHPI GGTGA 2 cut(s) 71, 109
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 286, 563
BccI CCATC 2 cut(s) 108, 181
BciT130I CCWGG 2 cut(s) 57, 460
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 2 cut(s) 35, 686
BcoDI GTCTC 2 cut(s) 160, 569
BfaI CTAG 2 cut(s) 107, 473
BfmI CTRYAG 1 cut(s) 268
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 2 cut(s) 300, 577
BlsI GCNGC 2 cut(s) 301, 578
Bme1390I CCNGG 4 cut(s) 35, 57, 460, 686
BmiI GGNNCC 2 cut(s) 93, 457
BmrFI CCNGG 4 cut(s) 35, 57, 460, 686
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 628
BpuMI CCSGG 2 cut(s) 35, 686
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 33, 459
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 496
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 2 cut(s) 57, 460
BseDI CCNNGG 2 cut(s) 33, 459
BseLI CCNNNNNNNGG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 2 cut(s) 286, 563
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 3 cut(s) 35, 216, 685
BslI CCNNNNNNNGG 1 cut(s) 39
BsmAI GTCTC 2 cut(s) 160, 569
BsmI GAATGC 2 cut(s) 317, 464
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 1 cut(s) 708
BspANI GGCC 1 cut(s) 143
BspEI TCCGGA 1 cut(s) 215
BspLI GGNNCC 2 cut(s) 93, 457
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 33, 459
BssMI GATC 1 cut(s) 708
Bst2UI CCWGG 2 cut(s) 57, 460
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 126, 304
BstDEI CTNAG 3 cut(s) 346, 485, 628
BstKTI GATC 1 cut(s) 711
BstMAI GTCTC 2 cut(s) 160, 569
BstMBI GATC 1 cut(s) 708
BstMWI GCNNNNNNNGC 4 cut(s) 140, 374, 624, 722
BstNI CCWGG 2 cut(s) 57, 460
BstSCI CCNGG 4 cut(s) 33, 55, 458, 684
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 286, 563
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 377, 489
Cac8I GCNNGC 2 cut(s) 126, 304
Csp6I GTAC 1 cut(s) 325
CviAII CATG 5 cut(s) 121, 335, 399, 452, 561
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 346, 485, 628
DpnI GATC 1 cut(s) 710
DpnII GATC 1 cut(s) 708
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 55, 458
EcoT38I GRGCYC 1 cut(s) 114
FaeI CATG 5 cut(s) 124, 338, 402, 455, 564
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FatI CATG 5 cut(s) 120, 334, 398, 451, 560
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 300, 577
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 300, 577
FspBI CTAG 2 cut(s) 107, 473
GluI GCNGC 2 cut(s) 300, 577
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 35, 216, 685
Hin1II CATG 5 cut(s) 124, 338, 402, 455, 564
HinfI GANTC 2 cut(s) 67, 175
HpaII CCGG 3 cut(s) 35, 216, 685
HphI GGTGA 2 cut(s) 71, 109
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 180, 735
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 2 cut(s) 175, 579
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 8 cut(s) 29, 128, 193, 302, 317, 579, 608, 678
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 374, 624, 722
HpyF3I CTNAG 3 cut(s) 346, 485, 628
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 5 cut(s) 124, 338, 402, 455, 564
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 1 cut(s) 708
Lsp1109I GCAGC 2 cut(s) 286, 563
LweI GCATC 1 cut(s) 16
MaeI CTAG 2 cut(s) 107, 473
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 2 cut(s) 475, 544
MalI GATC 1 cut(s) 710
MboI GATC 1 cut(s) 708
MboII GAAGA 3 cut(s) 160, 170, 173
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 7, 129, 136
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 4 cut(s) 154, 436, 500, 693
MroI TCCGGA 1 cut(s) 215
MseI TTAA 3 cut(s) 6, 330, 551
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 3 cut(s) 35, 216, 685
MspR9I CCNGG 4 cut(s) 35, 57, 460, 686
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 2 cut(s) 317, 464
MvaI CCWGG 2 cut(s) 57, 460
MwoI GCNNNNNNNGC 4 cut(s) 140, 374, 624, 722
NciI CCSGG 2 cut(s) 35, 686
NdeII GATC 1 cut(s) 708
NlaIII CATG 5 cut(s) 124, 338, 402, 455, 564
NlaIV GGNNCC 2 cut(s) 93, 457
PctI GAATGC 2 cut(s) 317, 464
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 301, 578
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 55, 458
PspGI CCWGG 2 cut(s) 55, 458
PspN4I GGNNCC 2 cut(s) 93, 457
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 6, 330, 551
SatI GCNGC 2 cut(s) 300, 577
Sau3AI GATC 1 cut(s) 708
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 4 cut(s) 35, 57, 460, 686
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 7, 129, 136
SspMI CTAG 2 cut(s) 107, 473
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 33, 55, 458, 684
TaiI ACGT 1 cut(s) 482
TaqI TCGA 3 cut(s) 146, 207, 434
TaqII GACCGA 1 cut(s) 458
TasI AATT 3 cut(s) 7, 129, 136
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 3 cut(s) 6, 330, 551
Tru9I TTAA 3 cut(s) 6, 330, 551
TscAI CASTG 2 cut(s) 384, 496
TseI GCWGC 2 cut(s) 299, 576
TspDTI ATGAA 3 cut(s) 171, 223, 609
TspRI CASTG 2 cut(s) 384, 496
XspI CTAG 2 cut(s) 107, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.