RLG00000005856

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000475
Physical Location & Seq
Forward (+)
2387261 .. 2388187
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005856

Sequence Viewer

Length: 438 bp
ATGTTGGCATACGTAGTCATGTCCTGGTTCTCAAAGATGTCTTTGGACGCTGTTCTCCTATATGGTACTGCAGGTCCGTCGCGTTCATTAAGAAATGAGTGGGCGCCGCCTCTACATTTCTTCACTCAGGTTGGGGTCTCTTTCGTGCACAACGAGTACAGGGCGTGGTGGCAAGTGGCTCTTGTTGTTTCTGTTTTGGAGGAAGACAAGTTACTATTCGATGCCTTTTTGACCTCATCAAAGTTGAGAAAAGGAAACAGATTAACGGGGTTTATTTTGATGCTTCTCTATTTTGGTTGGTGTAGCTTGCCGAACCTCTTGAGGTCGGAGAGATGGAGTTTTACTAGTGGAGTTGCATATGCTTTAGTTGACAGAGGCTTGTTCTGTTTAGGGCACGTTATGAATTGGCCGGGTTGCTTGCACGATTTATTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

8.52

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 2 cut(s) 67, 158
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 1 cut(s) 407
ApaLI GTGCAC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 74
BaeGI GKGCMC 2 cut(s) 150, 396
BanI GGYRCC 1 cut(s) 103
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 150
BccI CCATC 1 cut(s) 327
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 2 cut(s) 25, 411
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 2 cut(s) 25, 411
BmsI GCATC 2 cut(s) 211, 270
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 142
BseBI CCWGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 140
BseSI GKGCMC 2 cut(s) 150, 396
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 150, 396
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 308, 419
BstDEI CTNAG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 23, 409
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 2 cut(s) 150, 396
BstSNI TACGTA 1 cut(s) 13
BstUI CGCG 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 409
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 308, 419
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 66, 157
CviAII CATG 2 cut(s) 19, 435
CviJI RGCY 4 cut(s) 179, 306, 378, 409
CviKI_1 RGCY 4 cut(s) 179, 306, 378, 409
CviQI GTAC 2 cut(s) 66, 157
DdeI CTNAG 1 cut(s) 126
DinI GGCGCC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 407
Eco105I TACGTA 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
FaeI CATG 2 cut(s) 22, 438
FaiI YATR 8 cut(s) 10, 20, 61, 63, 358, 360, 401, 436
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 2 cut(s) 18, 434
FauNDI CATATG 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 409
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 22, 438
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 148, 370
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 2 cut(s) 148, 370
Hpy99I CGWCG 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 12, 396
HpyCH4V TGCA 4 cut(s) 71, 148, 356, 421
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 12, 396
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 22, 438
HspAI GCGC 1 cut(s) 104
KasI GGCGCC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 10, 37, 57, 113, 145, 423
LweI GCATC 2 cut(s) 211, 270
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 12, 396
MaeIII GTNAC 1 cut(s) 210
MboII GAAGA 2 cut(s) 112, 215
MhlI GDGCHC 2 cut(s) 150, 396
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 120, 193, 244, 315, 326, 368
MseI TTAA 2 cut(s) 89, 263
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 2 cut(s) 25, 411
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 82
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 411
NdeI CATATG 1 cut(s) 358
NlaIII CATG 2 cut(s) 22, 438
NlaIV GGNNCC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 1 cut(s) 108
PluTI GGCGCC 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 2 cut(s) 67, 158
RsaNI GTAC 2 cut(s) 66, 157
SaqAI TTAA 2 cut(s) 89, 263
SatI GCNGC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 25, 411
SduI GDGCHC 2 cut(s) 150, 396
SetI ASST 8 cut(s) 15, 76, 132, 236, 308, 318, 326, 399
SfaNI GCATC 2 cut(s) 211, 270
SfcI CTRYAG 1 cut(s) 69
SfoI GGCGCC 1 cut(s) 105
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SnaBI TACGTA 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 1 cut(s) 403
SsiI CCGC 1 cut(s) 107
SspDI GGCGCC 1 cut(s) 103
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 23, 409
TaiI ACGT 2 cut(s) 15, 399
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 89, 263
Tru9I TTAA 2 cut(s) 89, 263
TspDTI ATGAA 2 cut(s) 75, 416
TspGWI ACGGA 1 cut(s) 66
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 74
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.