RLG00000023775

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000475
Physical Location & Seq
Reverse (-)
28072826 .. 28073795
970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023775

Sequence Viewer

Length: 864 bp
ATGGAGAGCAACATAATGTTGAAGAACCAGAATCTGGATGCCTTTGATATTCTTAGAAAAGCTTTTGATCAAGTATCAGAAATTCTAAAACAACCGGTTTATTATTTTGAGGACTACATGTTTAATTGGTCATTACCATTTGATGAAACCCCGCACTGGAACAAAGGGTTTCCTGGTGAGTTGATTCAACAAGCACTTCTCTATCTGGTGCCTTTCCATCTCCTAGAGCTCATCACCATGCTTGCAATTGCTAATTTGGCCTCGAAGATATATAAAGAAGAGAGACCAATGAGTCTGAAGGAGATGGTGCATACAAAACCTTTCGACAAATCCGGACTGAAAGCCTTTTTCATCACATCCGTCTATGTTCTCGTCTTGTCCACCTGTAGTGATCTACTCGGATTTGTATGGTCGGCTGCAAGCTACTCTTTTGCATTCAGGTACTTTAACCATGATATACTCTTAGCTTTATGGTGTTGTATAGCAAGTGTAGCACTGCTAACAATGTATTTGGCATGGAATGTGATATGGAATATGAGTATTGTGATCTCCATATTGGAGGGGATACATGGAACCAGGGCATTCGGTCTAGTAACGTATCTAAGCACTGGCAACGAGTGGGGAGGGTTTCTTTTGATGTTGATTTTCTTTGCTTGGGAAGTAACTTCAAGGTTGCCTTGCCTCTATTTTGGCTGCAAAGAAAGGGGGAATGAAATGTTTGTTGCACAGAGTAGCTTGTTGTGCTTAGGGAATGTGTTCAAGTTGGTCGTCTTCGTTATATATTTCCACGATTGCAAGAACCGGGTTTTAGAAAAGAGGTTGATGATCAAGGCTAAAAGAGCTTGTTATCAGAGCTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

33.18

Weight (kDa)

7.54

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 208
AccB7I CCANNNNNTGG 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 34, 156
AflIII ACRYGT 1 cut(s) 117
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 4 cut(s) 22, 188, 669, 760
AjnI CCWGG 2 cut(s) 172, 575
AluBI AGCT 7 cut(s) 62, 229, 423, 467, 735, 842, 855
AluI AGCT 7 cut(s) 62, 229, 423, 467, 735, 842, 855
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 2 cut(s) 416, 693
ApoI RAATTY 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 755
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 188, 226
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 763
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 403, 680
BccI CCATC 2 cut(s) 225, 298
BciT130I CCWGG 2 cut(s) 174, 577
BciVI GTATCC 1 cut(s) 558
BclI TGATCA 2 cut(s) 67, 825
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 224, 590
BfmI CTRYAG 1 cut(s) 385
BfuI GTATCC 1 cut(s) 558
BisI GCNGC 2 cut(s) 417, 694
BlsI GCNGC 2 cut(s) 418, 695
Bme1390I CCNGG 3 cut(s) 174, 577, 803
BmiI GGNNCC 2 cut(s) 210, 574
BmrFI CCNGG 3 cut(s) 174, 577, 803
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 763
Bpu10I CCTNAGC 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 576
BsaWI WCCGGW 2 cut(s) 94, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 156
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 161, 613
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 2 cut(s) 174, 577
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 43, 356
BseLI CCNNNNNNNGG 2 cut(s) 34, 156
BseNI ACTGG 2 cut(s) 161, 613
BseXI GCAGC 2 cut(s) 403, 680
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 208
BshTI ACCGGT 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 95, 333, 802
BslI CCNNNNNNNGG 2 cut(s) 34, 156
BsmAI GTCTC 1 cut(s) 277
BsmI GAATGC 2 cut(s) 434, 581
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 4 cut(s) 67, 391, 546, 825
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 260
BspEI TCCGGA 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 210, 574
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 161, 613
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 4 cut(s) 67, 391, 546, 825
Bst2UI CCWGG 2 cut(s) 174, 577
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 243, 421
BstDEI CTNAG 4 cut(s) 53, 463, 602, 745
BstF5I GGATG 2 cut(s) 43, 356
BstKTI GATC 4 cut(s) 70, 394, 549, 828
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 4 cut(s) 67, 391, 546, 825
BstMWI GCNNNNNNNGC 4 cut(s) 257, 491, 741, 839
BstNI CCWGG 2 cut(s) 174, 577
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 172, 575, 801
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 403, 680
BstV2I GAAGAC 1 cut(s) 763
BsuI GTATCC 1 cut(s) 558
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 2 cut(s) 43, 356
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 3 cut(s) 154, 494, 606
Cac8I GCNNGC 2 cut(s) 243, 421
CaiI CAGNNNCTG 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 442
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 5 cut(s) 118, 238, 452, 516, 569
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 4 cut(s) 53, 463, 602, 745
DpnI GATC 4 cut(s) 69, 393, 548, 827
DpnII GATC 4 cut(s) 67, 391, 546, 825
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 172, 575
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 5 cut(s) 121, 241, 455, 519, 572
FalI AAGNNNNNCTT 4 cut(s) 412, 444, 661, 693
FatI CATG 5 cut(s) 117, 237, 451, 515, 568
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 2 cut(s) 67, 825
Fnu4HI GCNGC 2 cut(s) 417, 694
FokI GGATG 2 cut(s) 50, 343
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 417, 694
FspBI CTAG 2 cut(s) 224, 590
GluI GCNGC 2 cut(s) 417, 694
HaeIII GGCC 1 cut(s) 260
HapII CCGG 3 cut(s) 95, 333, 802
Hin1II CATG 5 cut(s) 121, 241, 455, 519, 572
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 3 cut(s) 31, 184, 292
HpaII CCGG 3 cut(s) 95, 333, 802
HphI GGTGA 2 cut(s) 188, 226
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 4 cut(s) 79, 297, 401, 852
Hpy188III TCNNGA 2 cut(s) 35, 333
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 7 cut(s) 245, 310, 419, 434, 696, 725, 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 491, 741, 839
HpyF3I CTNAG 4 cut(s) 53, 463, 602, 745
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 5 cut(s) 121, 241, 455, 519, 572
Kpn2I TCCGGA 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 67, 825
Kzo9I GATC 4 cut(s) 67, 391, 546, 825
Lsp1109I GCAGC 2 cut(s) 403, 680
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 224, 590
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 592, 661
MalI GATC 4 cut(s) 69, 393, 548, 827
MboI GATC 4 cut(s) 67, 391, 546, 825
MboII GAAGA 4 cut(s) 34, 277, 290, 763
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 4 cut(s) 81, 124, 246, 253
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 6 cut(s) 103, 271, 553, 617, 692, 810
MroI TCCGGA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 2 cut(s) 123, 447
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 3 cut(s) 95, 333, 802
MspR9I CCNGG 3 cut(s) 174, 577, 803
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 2 cut(s) 434, 581
MvaI CCWGG 2 cut(s) 174, 577
MwoI GCNNNNNNNGC 4 cut(s) 257, 491, 741, 839
NciI CCSGG 1 cut(s) 803
NdeII GATC 4 cut(s) 67, 391, 546, 825
NlaIII CATG 5 cut(s) 121, 241, 455, 519, 572
NlaIV GGNNCC 2 cut(s) 210, 574
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PctI GAATGC 2 cut(s) 434, 581
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 2 cut(s) 31, 184
PflMI CCANNNNNTGG 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 2 cut(s) 418, 695
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 172, 575
PspGI CCWGG 2 cut(s) 172, 575
PspN4I GGNNCC 2 cut(s) 210, 574
PstNI CAGNNNCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 123, 447
SatI GCNGC 2 cut(s) 417, 694
Sau3AI GATC 4 cut(s) 67, 391, 546, 825
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 174, 577, 803
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 4 cut(s) 81, 124, 246, 253
SsiI CCGC 1 cut(s) 152
SspMI CTAG 2 cut(s) 224, 590
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 172, 575, 801
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 263, 324
TaqII GACCGA 1 cut(s) 575
TasI AATT 4 cut(s) 81, 124, 246, 253
TfiI GAWTC 2 cut(s) 31, 184
Tru1I TTAA 2 cut(s) 123, 447
Tru9I TTAA 2 cut(s) 123, 447
TscAI CASTG 3 cut(s) 161, 501, 613
TseI GCWGC 2 cut(s) 416, 693
TspDTI ATGAA 3 cut(s) 159, 340, 726
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 3 cut(s) 161, 501, 613
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 81
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 2 cut(s) 224, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.