FvH4_3g33230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000475
Physical Location & Seq
Forward (+)
28634347 .. 28635564
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33230.t1

Sequence Viewer

Length: 816 bp
ATGGAGATAGATAGCAACCTGATCATCAAGAAAGATAAGTTAGAAGCTTTTGATATTCTCCGAAAAGCCTCGACAATCTCAGCCAAAAAACATAAACTTCTTGATCTTCACCATTCTTACCTCCCTCCCTCGCTTCTGTTTCTTGGCCTTGTTTATTTGATCCCTCTCCAGCTCCTAGAGCTCAGCACCATCCTTGTGATAGTTGATTTGGCATCGAAGACATATGCTAGACAAGAAGAGGAAGAGCCACCATTGACACTCAAGGAAATGGTTCGTAAACCCTTCGATGTAAGTAGAGTCATAGGCACTTTGGACACATTTGTGTATGTTGTCATCATGTCGACTATTTCTTTACTAGGTTTGGTATGGTTAGCAGCAACATACTATGTTGTCACCATGTTCAATCACGATGTACTAGTCTTCGTGTGGAGTTGGGTGGGATTTGTGGGACTTATGACAATGTATTTGGGATGGAGCGCGGTGTGTAACATGAGTGTTGTGATATCAATTCTTGAGGGGAGATATGGAACCAAGGCAATCGCTTCAGCGATTTCTTATAGCTTTGGTAACGAATGGAGAGGGTTTCGTTTGATGCTTGTTTTCTTTGCTTGGGAAGTTGGTTTGAGGTTGCCCTGCTTCCATTTTGACTGCAAAGGAACTTGGAGTGTTGGTATTTTGATACAAATTGGCTTGTTCTGCTTGGGAAATGTGGTGAAGTGGGTCGCCTTCACGATTTACTTCTATGGTTGTAAGAACCGTGAAATAGAGAGGAAGTTGGTGATGAAAGCTAAGAAAAGAGCTGTTGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

8.98

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 341
AccII CGCG 1 cut(s) 479
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 1 cut(s) 414
AgsI TTSAA 2 cut(s) 403, 806
AhlI ACTAGT 1 cut(s) 415
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 6 cut(s) 47, 172, 181, 561, 788, 800
AluI AGCT 6 cut(s) 47, 172, 181, 561, 788, 800
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 374
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 101, 385, 724, 790
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 224, 412
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 386
BccI CCATC 2 cut(s) 197, 465
BclI TGATCA 1 cut(s) 21
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 4 cut(s) 176, 228, 356, 416
BisI GCNGC 1 cut(s) 375
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 529
BmsI GCATC 2 cut(s) 221, 582
BpiI GAAGAC 2 cut(s) 224, 412
BpmI CTGGAG 1 cut(s) 152
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 245, 533
BsaJI CCNNGG 1 cut(s) 531
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 189, 476
BseMII CTCAG 2 cut(s) 93, 196
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 183
BslFI GGGAC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 21, 103, 159
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 92, 195
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 3 cut(s) 21, 103, 159
BssT1I CCWWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 758
Bst6I CTCTTC 2 cut(s) 231, 237
BstDEI CTNAG 3 cut(s) 79, 182, 789
BstF5I GGATG 2 cut(s) 189, 476
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 3 cut(s) 24, 106, 162
BstMBI GATC 3 cut(s) 21, 103, 159
BstMWI GCNNNNNNNGC 2 cut(s) 178, 696
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 1 cut(s) 386
BstV2I GAAGAC 2 cut(s) 224, 412
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 189, 476
CfoI GCGC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 413
CviAII CATG 3 cut(s) 337, 397, 490
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 3 cut(s) 79, 182, 789
DpnI GATC 3 cut(s) 23, 105, 161
DpnII GATC 3 cut(s) 21, 103, 159
Eam1104I CTCTTC 2 cut(s) 231, 237
EarI CTCTTC 2 cut(s) 231, 237
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 504
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 340, 400, 493
FaqI GGGAC 1 cut(s) 462
FatI CATG 3 cut(s) 336, 396, 489
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 21
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 176, 483
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 4 cut(s) 176, 228, 356, 416
GlaI GCGC 1 cut(s) 478
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 479
Hin1II CATG 3 cut(s) 340, 400, 493
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 1 cut(s) 297
HphI GGTGA 4 cut(s) 101, 385, 724, 790
Hpy166II GTNNAC 2 cut(s) 278, 342
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 5 cut(s) 28, 101, 407, 512, 730
Hpy8I GTNNAC 2 cut(s) 278, 342
HpyAV CCTTC 2 cut(s) 292, 736
HpyCH4III ACNGT 1 cut(s) 758
HpyCH4V TGCA 1 cut(s) 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 696
HpyF3I CTNAG 3 cut(s) 79, 182, 789
Hsp92II CATG 3 cut(s) 340, 400, 493
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 21, 103, 159
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 177, 474
LpnPI CCDG 3 cut(s) 32, 182, 646
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 221, 582
MaeI CTAG 4 cut(s) 176, 228, 356, 416
MaeIII GTNAC 3 cut(s) 391, 485, 566
MalI GATC 3 cut(s) 23, 105, 161
MboI GATC 3 cut(s) 21, 103, 159
MboII GAAGA 5 cut(s) 98, 229, 248, 254, 412
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 507, 684
MlyI GAGTC 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 194, 320
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 178, 696
NdeI CATATG 1 cut(s) 223
NdeII GATC 3 cut(s) 21, 103, 159
NlaIII CATG 3 cut(s) 340, 400, 493
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 529
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 194, 320
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 21, 103, 159
SchI GAGTC 1 cut(s) 306
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 2 cut(s) 221, 582
SmiMI CAYNNNNRTG 2 cut(s) 194, 320
SmlI CTYRAG 2 cut(s) 260, 512
SmoI CTYRAG 2 cut(s) 260, 512
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 2 cut(s) 507, 684
SsiI CCGC 1 cut(s) 479
SspMI CTAG 4 cut(s) 176, 228, 356, 416
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 758
TaqI TCGA 4 cut(s) 71, 215, 285, 341
TasI AATT 2 cut(s) 507, 684
TatI WGTACW 1 cut(s) 412
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 4 cut(s) 176, 228, 356, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.