AT1G23850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000475
Physical Location & Seq
Reverse (-)
8425724 .. 8427235
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23850.1

Sequence Viewer

Length: 1065 bp
ATGAAGATTGAGGAGGATCTAGGTTTCATCAACATACTCAAACGAGCAACAAAGCTTCTATGTGGTAACATCAATCTTGTTCTCTTCCTCTTCCTTTGCTCTCTCCCCCTCTTTTGTTTCTTGATCTTCTTCGAGCTTTCACTCCAAACCACTGTCTCACTCGCTTCTCAATACCTCGTTCGACAACTCACTAATTGGGATTACTACTACGTTCCTCAAGATGCTTCCGTCTTGGAGAATCTGATTCCATTGCTTATCCAGACATTTCTACTCTACTTGTTCCCGTACGGCCTCATAGACCTCTTCACCACCACCACAATAGTCTCTGCATCTTGGACTGTTCACACGTCGGAGGAGGAACCGTTAAGGTTCGGTCAATTGGTTCGGAGAACGGTAGAGATATGTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACGTCCTTCTCTTGTCAACCCCTGTTTTCTTTGGCTTCTTATTTGTAGCAACGAACTATTTCCACATCATTTCTCTGACCGGATCAGGCGAAAACTCATACTACTATTCTATAAACATTGAAGAAGATGCCGAAGGCTATTACAGAAGCAGCAGTGTCAACAGTCCGGTAAAGATGTTGTTTGATGCGGTTTTAGCTATGTTTCACGGTGCTATCTTTCTCGGTTTACTGGCGATGTTCAGCAAGTGGAGTGCGGGATGGAACATGGGTTTGGTTGTTTCGGTGTTAGAAGAGGAAGAAAATGGTCAAAGCATATATGGAACCGATGCCTTGACACTGTCTTCTAACTATGGAAAAGGACATGAGAAGCGTGGTCTCCAAGTGATGCTGGTGTTCTTGGTCTTCGCTATTGCGATGAGGATGCCATGTTTTTGTTTCAAATGCACGGAGAGTTCCAATGGAAACAGAGTGTTGTACACGAGTTTCTATGTGGGTTTGATCTGTGTTGGGAATATGATCAAATGGGTGGCTTGTGTAGTGTTTTATGAAGATTGTAGAACTAGCGTTTTGGAGAAGAAAGGTGATGTGGAGATTGGATCAAAAGGTAAGACTTTTGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

40.0

Weight (kDa)

5.24

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 629, 695
AclWI GGATC 3 cut(s) 24, 532, 1045
AfaI GTAC 3 cut(s) 287, 443, 917
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 3 cut(s) 419, 563, 880
AjiI CACGTC 1 cut(s) 348
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AluBI AGCT 3 cut(s) 55, 136, 638
AluI AGCT 3 cut(s) 55, 136, 638
Alw26I GTCTC 3 cut(s) 160, 328, 821
AlwI GGATC 3 cut(s) 24, 532, 1045
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 298, 424, 1034
BauI CACGAG 1 cut(s) 919
BbsI GAAGAC 2 cut(s) 774, 835
BbvI GCAGC 1 cut(s) 603
BccI CCATC 1 cut(s) 693
BceAI ACGGC 1 cut(s) 304
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BclI TGATCA 2 cut(s) 429, 957
BcoDI GTCTC 3 cut(s) 160, 328, 821
BfaI CTAG 2 cut(s) 20, 1002
BisI GCNGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 360, 763
BmsI GCATC 7 cut(s) 211, 338, 559, 616, 757, 816, 852
BpiI GAAGAC 2 cut(s) 774, 835
BpuEI CTTGAG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 821
BsaWI WCCGGW 2 cut(s) 521, 607
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse1I ACTGG 1 cut(s) 675
Bse3DI GCAATG 1 cut(s) 248
BseGI GGATG 2 cut(s) 704, 867
BseMI GCAATG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 675
BseRI GAGGAG 2 cut(s) 26, 368
BseXI GCAGC 1 cut(s) 603
BshFI GGCC 1 cut(s) 291
BsiSI CCGG 2 cut(s) 522, 608
BsiWI CGTACG 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 160, 328, 821
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 1 cut(s) 821
Bsp1407I TGTACA 1 cut(s) 915
Bsp143I GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
BspACI CCGC 2 cut(s) 629, 695
BspANI GGCC 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 360, 763
BspPI GGATC 3 cut(s) 24, 532, 1045
BspTNI GGTCTC 1 cut(s) 821
BsrDI GCAATG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 915
BsrI ACTGG 1 cut(s) 675
BssMI GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
BssSI CACGAG 1 cut(s) 919
Bst2BI CACGAG 1 cut(s) 919
Bst4CI ACNGT 7 cut(s) 154, 340, 363, 394, 605, 650, 780
Bst6I CTCTTC 4 cut(s) 89, 95, 308, 726
BstAUI TGTACA 1 cut(s) 915
BstF5I GGATG 2 cut(s) 704, 867
BstKTI GATC 7 cut(s) 19, 126, 432, 527, 942, 960, 1040
BstMAI GTCTC 3 cut(s) 160, 328, 821
BstMBI GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstV1I GCAGC 1 cut(s) 603
BstV2I GAAGAC 2 cut(s) 774, 835
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 291
BtgZI GCGATG 2 cut(s) 689, 869
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 2 cut(s) 704, 867
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 3 cut(s) 150, 601, 776
Csp6I GTAC 3 cut(s) 286, 442, 916
CviAII CATG 3 cut(s) 706, 803, 867
CviJI RGCY 7 cut(s) 55, 136, 291, 477, 579, 638, 971
CviKI_1 RGCY 7 cut(s) 55, 136, 291, 477, 579, 638, 971
CviQI GTAC 3 cut(s) 286, 442, 916
DpnI GATC 7 cut(s) 18, 125, 431, 526, 941, 959, 1039
DpnII GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
Eam1104I CTCTTC 4 cut(s) 89, 95, 308, 726
EarI CTCTTC 4 cut(s) 89, 95, 308, 726
Eco31I GGTCTC 1 cut(s) 821
FaeI CATG 3 cut(s) 709, 806, 870
FatI CATG 3 cut(s) 705, 802, 866
FauI CCCGC 1 cut(s) 688
FbaI TGATCA 2 cut(s) 429, 957
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 2 cut(s) 711, 874
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 2 cut(s) 20, 1002
GluI GCNGC 1 cut(s) 592
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 522, 608
Hin1II CATG 3 cut(s) 709, 806, 870
HincII GTYRAC 2 cut(s) 459, 601
HindII GTYRAC 2 cut(s) 459, 601
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 238, 244
HpaII CCGG 2 cut(s) 522, 608
HphI GGTGA 3 cut(s) 298, 424, 1034
Hpy166II GTNNAC 5 cut(s) 343, 459, 601, 668, 918
Hpy188I TCNGA 5 cut(s) 243, 352, 387, 429, 519
Hpy188III TCNNGA 3 cut(s) 121, 218, 259
Hpy8I GTNNAC 5 cut(s) 343, 459, 601, 668, 918
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 3 cut(s) 413, 458, 569
HpyCH4III ACNGT 7 cut(s) 154, 340, 363, 394, 605, 650, 780
HpyCH4IV ACGT 3 cut(s) 210, 347, 444
HpyCH4V TGCA 3 cut(s) 329, 885, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpySE526I ACGT 3 cut(s) 210, 347, 444
Hsp92II CATG 3 cut(s) 709, 806, 870
Ksp22I TGATCA 2 cut(s) 429, 957
Kzo9I GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
LpnPI CCDG 7 cut(s) 272, 477, 513, 535, 621, 656, 815
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 7 cut(s) 211, 338, 559, 616, 757, 816, 852
MaeI CTAG 2 cut(s) 20, 1002
MaeII ACGT 3 cut(s) 210, 347, 444
MaeIII GTNAC 1 cut(s) 65
MalI GATC 7 cut(s) 18, 125, 431, 526, 941, 959, 1039
MboI GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
MfeI CAATTG 1 cut(s) 377
MflI RGATCY 1 cut(s) 16
MluCI AATT 2 cut(s) 193, 377
MmeI TCCRAC 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 1 cut(s) 365
MspI CCGG 2 cut(s) 522, 608
MunI CAATTG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 635
NdeII GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
NlaIII CATG 3 cut(s) 709, 806, 870
NlaIV GGNNCC 2 cut(s) 360, 763
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 238, 244
Pfl23II CGTACG 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 778
PkrI GCNGC 1 cut(s) 593
PspLI CGTACG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 360, 763
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 778
RsaI GTAC 3 cut(s) 287, 443, 917
RsaNI GTAC 3 cut(s) 286, 442, 916
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 1 cut(s) 592
Sau3AI GATC 7 cut(s) 16, 123, 429, 524, 939, 957, 1037
SfaNI GCATC 7 cut(s) 211, 338, 559, 616, 757, 816, 852
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 193, 377
SsiI CCGC 2 cut(s) 629, 695
SspMI CTAG 2 cut(s) 20, 1002
TaaI ACNGT 7 cut(s) 154, 340, 363, 394, 605, 650, 780
TaiI ACGT 3 cut(s) 213, 350, 447
TaqI TCGA 2 cut(s) 132, 181
TaqII GACCGA 1 cut(s) 362
TasI AATT 2 cut(s) 193, 377
TatI WGTACW 1 cut(s) 915
TfiI GAWTC 2 cut(s) 238, 244
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 3 cut(s) 157, 601, 783
TseI GCWGC 1 cut(s) 591
TspDTI ATGAA 3 cut(s) 16, 17, 1002
TspGWI ACGGA 2 cut(s) 217, 902
TspRI CASTG 3 cut(s) 157, 601, 783
Tth111I GACNNNGTC 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 2 cut(s) 20, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.