Rroxscaffold_5G00384650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000475
Physical Location & Seq
Reverse (-)
63914958 .. 63916014
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384650.1

Sequence Viewer

Length: 1002 bp
ATGAAGAATCCAATAGATCCCGAGCAGATGAAGCTCTGGTTTCTTGGCACCTTTGCCATAATCATATCAGCCATGAAAATCCCCTTCAGAAATGCCAATTTCATAACCTTTACTTTGATTACCTTCATTCCATTATTTTTCATAACGTTAATACCAAGACTACTTCATATCCAGGATCCGCTTATTAATTTGTTCATAGAGGCATTAGAAAAGCGAAAAATTCTCACTTACACCTCCACTTTCGCCACCATAAAGACCTCTCGGGCTGTAGAACCGATCACTCAGTTTCCGAAAGTGTTCATGGATGACCTGGTCAACTTCCTCACTGCACTGGCAACCATCTATGCTTCCTCAACAATCCATACTAGTAATGGTGATCATAAGGCCTCAATGGGTCTCAGAGATCTTCTGAAAAGTTACATATCCAAATCACACTGGCGCGACGGTGTTTTCACATTCATTGCTATGTCCATGTTGTACAATATTTGTTTACCTTATGTGTCCTATTGTATTCATGTACAACAGCTGCATTTATCAGGTTTTAGAGACAGTTTAATCTTGAAGTTTGTACATGTTGTGGTTCCTGCTGTGACATTTTCTATATGGGTGGAGTACAATGCCTGGTGGAAGCTAAGTGTTGTTGCGTCCGTTTTAGAGTTAGAGGAGCAGAGAGGATTTCAAGCATTTTCAACCTCATCACAGTTAATGAAAGGAAACAAACTACGAGGATTCTTCTTGATGCTTCTTCTTCGGAGCTCGGATTGGCCAACCATCCTTAGAGGACAGAGTTCCAATTTTCCAACCCTCCTTAGAGGCCAGAGTTTTTACGTTCCAAGTACAGATATTGCACATGTTTTTCTTCACGCAGGCCTGTTGTGTTTAGGGAAGGTCATGACTTGGATGGTTTTCACAGTTTATTACTTCGATTGCAAGAATCGTCGGCAGAAAAGTTTGTACCACTTGGCAAGGTTTGAACGTCAAATAGCTCTTAAGCCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

38.46

Weight (kDa)

9.64

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 179
AclI AACGTT 1 cut(s) 146
AclWI GGATC 3 cut(s) 11, 170, 183
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 70
AfaI GTAC 6 cut(s) 479, 519, 570, 614, 838, 956
AflII CTTAAG 1 cut(s) 989
AflIII ACRYGT 2 cut(s) 571, 850
AgsI TTSAA 4 cut(s) 562, 680, 690, 974
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 3 cut(s) 171, 309, 620
AluBI AGCT 5 cut(s) 34, 526, 631, 756, 986
AluI AGCT 5 cut(s) 34, 526, 631, 756, 986
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 2 cut(s) 401, 540
AlwI GGATC 3 cut(s) 11, 170, 183
Ama87I CYCGRG 2 cut(s) 20, 261
AoxI GGCC 4 cut(s) 384, 764, 814, 868
ApeKI GCWGC 1 cut(s) 526
ApoI RAATTY 1 cut(s) 219
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 20, 261
BalI TGGCCA 1 cut(s) 766
BamHI GGATCC 1 cut(s) 175
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 1 cut(s) 513
BccI CCATC 3 cut(s) 347, 779, 895
BciT130I CCWGG 3 cut(s) 173, 311, 622
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 401, 540
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 989
BglII AGATCT 1 cut(s) 403
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
Bme1390I CCNGG 3 cut(s) 173, 311, 622
BmeT110I CYCGRG 2 cut(s) 20, 261
BmiI GGNNCC 3 cut(s) 49, 177, 582
BmrFI CCNGG 3 cut(s) 173, 311, 622
BmsI GCATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 336, 440
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 173, 311, 622
BseGI GGATG 3 cut(s) 310, 771, 906
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 296, 412
BseNI ACTGG 2 cut(s) 336, 440
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 386, 766, 816, 870
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 2 cut(s) 20, 261
BsmAI GTCTC 2 cut(s) 401, 540
BsnI GGCC 4 cut(s) 386, 766, 816, 870
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 2 cut(s) 20, 261
Bsp1286I GDGCHC 1 cut(s) 758
Bsp1407I TGTACA 3 cut(s) 477, 517, 568
Bsp143I GATC 5 cut(s) 16, 175, 276, 376, 403
BspACI CCGC 1 cut(s) 179
BspANI GGCC 4 cut(s) 386, 766, 816, 870
BspCNI CTCAG 2 cut(s) 295, 411
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 3 cut(s) 49, 177, 582
BspPI GGATC 3 cut(s) 11, 170, 183
BspT107I GGYRCC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 3 cut(s) 477, 517, 568
BsrI ACTGG 2 cut(s) 336, 440
BssMI GATC 5 cut(s) 16, 175, 276, 376, 403
Bst2UI CCWGG 3 cut(s) 173, 311, 622
Bst4CI ACNGT 4 cut(s) 446, 551, 702, 913
BstAFI CTTAAG 1 cut(s) 989
BstAUI TGTACA 3 cut(s) 477, 517, 568
BstC8I GCNNGC 1 cut(s) 868
BstDEI CTNAG 5 cut(s) 282, 398, 632, 776, 809
BstF5I GGATG 3 cut(s) 310, 771, 906
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 5 cut(s) 19, 178, 279, 379, 406
BstMAI GTCTC 2 cut(s) 401, 540
BstMBI GATC 5 cut(s) 16, 175, 276, 376, 403
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 3 cut(s) 173, 311, 622
BstNSI RCATGY 2 cut(s) 575, 854
BstSCI CCNGG 3 cut(s) 171, 309, 620
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 513
BstX2I RGATCY 3 cut(s) 16, 175, 403
BstYI RGATCY 3 cut(s) 16, 175, 403
BsuRI GGCC 4 cut(s) 386, 766, 816, 870
BtsCI GGATG 3 cut(s) 310, 771, 906
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 324, 329, 433
Cac8I GCNNGC 1 cut(s) 868
CciI TCATGA 1 cut(s) 891
CfoI GCGC 1 cut(s) 441
CseI GACGC 1 cut(s) 633
CsiI ACCWGGT 1 cut(s) 309
Csp6I GTAC 6 cut(s) 478, 518, 569, 613, 837, 955
CviAII CATG 8 cut(s) 73, 301, 472, 515, 572, 851, 892, 996
CviQI GTAC 6 cut(s) 478, 518, 569, 613, 837, 955
DdeI CTNAG 5 cut(s) 282, 398, 632, 776, 809
DpnI GATC 5 cut(s) 18, 177, 278, 378, 405
DpnII GATC 5 cut(s) 16, 175, 276, 376, 403
EaeI YGGCCR 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 756
Eco147I AGGCCT 2 cut(s) 386, 870
Eco24I GRGCYC 1 cut(s) 758
Eco31I GGTCTC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 70
Eco88I CYCGRG 2 cut(s) 20, 261
EcoICRI GAGCTC 1 cut(s) 756
EcoRII CCWGG 3 cut(s) 171, 309, 620
EcoT38I GRGCYC 1 cut(s) 758
FaeI CATG 8 cut(s) 76, 304, 475, 518, 575, 854, 895, 999
FatI CATG 8 cut(s) 72, 300, 471, 514, 571, 850, 891, 995
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 527
FokI GGATG 3 cut(s) 317, 758, 913
FriOI GRGCYC 1 cut(s) 758
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 527
HaeIII GGCC 4 cut(s) 386, 766, 816, 870
HgaI GACGC 1 cut(s) 633
HhaI GCGC 1 cut(s) 441
Hin1II CATG 8 cut(s) 76, 304, 475, 518, 575, 854, 895, 999
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 7, 729, 934
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 2 cut(s) 316, 491
Hpy188I TCNGA 6 cut(s) 89, 291, 401, 411, 753, 760
Hpy188III TCNNGA 4 cut(s) 20, 559, 736, 892
Hpy8I GTNNAC 2 cut(s) 316, 491
Hpy99I CGWCG 2 cut(s) 446, 942
HpyAV CCTTC 3 cut(s) 94, 133, 880
HpyCH4III ACNGT 4 cut(s) 446, 551, 702, 913
HpyCH4IV ACGT 3 cut(s) 146, 828, 976
HpyCH4V TGCA 4 cut(s) 329, 529, 848, 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 5 cut(s) 282, 398, 632, 776, 809
HpySE526I ACGT 3 cut(s) 146, 828, 976
Hsp92II CATG 8 cut(s) 76, 304, 475, 518, 575, 854, 895, 999
HspAI GCGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 5 cut(s) 16, 175, 276, 376, 403
LmnI GCTCC 2 cut(s) 664, 753
Lsp1109I GCAGC 1 cut(s) 513
LweI GCATC 1 cut(s) 729
MabI ACCWGGT 1 cut(s) 309
MaeI CTAG 1 cut(s) 366
MaeII ACGT 3 cut(s) 146, 828, 976
MaeIII GTNAC 2 cut(s) 416, 589
MalI GATC 5 cut(s) 18, 177, 278, 378, 405
MboI GATC 5 cut(s) 16, 175, 276, 376, 403
MboII GAAGA 6 cut(s) 16, 398, 724, 737, 740, 851
MflI RGATCY 3 cut(s) 16, 175, 403
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 766
MluCI AATT 4 cut(s) 97, 187, 219, 793
MluNI TGGCCA 1 cut(s) 766
MmeI TCCRAC 1 cut(s) 824
Mox20I TGGCCA 1 cut(s) 766
MroXI GAANNNNTTC 1 cut(s) 296
MscI TGGCCA 1 cut(s) 766
MseI TTAA 5 cut(s) 149, 186, 554, 704, 990
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 766
MspA1I CMGCKG 1 cut(s) 526
MspCI CTTAAG 1 cut(s) 989
MspR9I CCNGG 3 cut(s) 173, 311, 622
MvaI CCWGG 3 cut(s) 173, 311, 622
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 5 cut(s) 16, 175, 276, 376, 403
NlaIII CATG 8 cut(s) 76, 304, 475, 518, 575, 854, 895, 999
NlaIV GGNNCC 3 cut(s) 49, 177, 582
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 2 cut(s) 575, 854
PagI TCATGA 1 cut(s) 891
PceI AGGCCT 2 cut(s) 386, 870
PciI ACATGT 2 cut(s) 571, 850
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 3 cut(s) 7, 729, 934
PflFI GACNNNGTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 1 cut(s) 528
PscI ACATGT 2 cut(s) 571, 850
PshBI ATTAAT 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 146
Psp6I CCWGG 3 cut(s) 171, 309, 620
PspGI CCWGG 3 cut(s) 171, 309, 620
PspN4I GGNNCC 3 cut(s) 49, 177, 582
PsuI RGATCY 3 cut(s) 16, 175, 403
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 6 cut(s) 479, 519, 570, 614, 838, 956
RsaNI GTAC 6 cut(s) 478, 518, 569, 613, 837, 955
RseI CAYNNNNRTG 1 cut(s) 464
SacI GAGCTC 1 cut(s) 758
SaqAI TTAA 5 cut(s) 149, 186, 554, 704, 990
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 5 cut(s) 16, 175, 276, 376, 403
ScrFI CCNGG 3 cut(s) 173, 311, 622
SduI GDGCHC 1 cut(s) 758
SexAI ACCWGGT 1 cut(s) 309
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 4 cut(s) 97, 187, 219, 793
SseBI AGGCCT 2 cut(s) 386, 870
SsiI CCGC 1 cut(s) 179
SspI AATATT 1 cut(s) 484
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 758
StuI AGGCCT 2 cut(s) 386, 870
StyD4I CCNGG 3 cut(s) 171, 309, 620
TaaI ACNGT 4 cut(s) 446, 551, 702, 913
TaiI ACGT 3 cut(s) 149, 831, 979
TaqI TCGA 1 cut(s) 924
TasI AATT 4 cut(s) 97, 187, 219, 793
TatI WGTACW 5 cut(s) 477, 517, 568, 612, 836
TfiI GAWTC 3 cut(s) 7, 729, 934
Tru1I TTAA 5 cut(s) 149, 186, 554, 704, 990
Tru9I TTAA 5 cut(s) 149, 186, 554, 704, 990
TscAI CASTG 3 cut(s) 331, 336, 440
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 589
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 3 cut(s) 331, 336, 440
Tth111I GACNNNGTC 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 989
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 219
XceI RCATGY 2 cut(s) 575, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.