Rh4DG416900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000475
Physical Location & Seq
Reverse (-)
62593325 .. 62594934
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG416900.1

Sequence Viewer

Length: 1296 bp
ATGAAGAATCCGATAGAACTTGAGCAGATCAAGCCATGGTTTCTTGGCACCATTGGTATAATGGGATCAGCCATGAAAATCCTTTTGGGAAATCTCAATTTCATAACCTTCAATTTGATCACCTCCTTTCCTCTTTTCTGCATGATGAAGTTCATACCAAGATCACCTTATGACTTTTGGCAGCCTAGTTTCATCATGGAGGCATCATTGGAGCTAAGGCGGCTCATTACTCACCCTGGCACTCTGAAATCTTCTATACCTTCGATTCAAGATTGGACAATACGAGTACTCGATGCGTGGCTTTTTGACATGATCAAGTTCCTCGTTGCACTCACATCTATCTACTCTGCTTCAATATTCTATACTACTAGTGTTGGCAAGTCAATGAGTCTCCGATATCTTGTTCAGAGTTCCGTCACCAAAATTTGGTGGCCTGAGCCTATAATTACATATTTTTCTCTGTCCCTAATTTCCTCTATCTTTTTAGAAGGTTTTAGACATTGGCTAAGGGCAAGGCCTACAAATCTGTACCTGATCATCCTACAATTTTTCGTTCCATTTGTGGCCGTTGCCAAATGGTTGGAGTTCAAAGCCTTGACGAATGTAGCTGTTGTTGTTTCCGTTTTAGAAGACAATATCAGAGGGCCTTTTGAAGCCTACTCAACCTCGTCGGAGCTAAGCAGAGGAAATAGACTAAGAGGGTTGGTTTTGATAATTCTCCATTCTAGTGTGCTCTCAGGCTTGAAGAACTTTATACAAAAAACTGTCTCTAATGGCTGGACTTCCCTTGTTATTAAACTGAGGGTCCAAGATGGCAACCTGATCTTAAAAGACAAAAAGTCAATGTTTATAAACAATAGCTTCTGTCTTCTGATGCGAAAAATTAGCAAAAATCACGGTGCAATGAGCAAGACAGTGAATGCGCTTATAACCATTACTGGAAACATCAAGTTCTTCATTTTCATTGTTCTTGTCACCTCACTTCCTCTCTTCTGTTTCTTGGTTTACTGCGAATCTTTTCTCCTGAAATTCCTGGTTGAAATGTCAGATGTTCTTCGACTACCTCATCAGTACATCCACTCTGAATGGCTCATACCAATTGGTATCATCAACAAATTGAACCAAGACTTTCCTGATGGGTTGATTCAACTAGTCCTTCTCTATCTGGTGCCTCTCCATCTCCTAGAGCTCGGTACTGTGCTAGTGACTGTCGATTTGGCATCACGGATATACAAAGAAGAGAAACATTTGAGTCTCAAGGAATGGTGCATAAACCCTTCAACAAAACAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

49.42

Weight (kDa)

9.46

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 851, 929
AccB1I GGYRCC 2 cut(s) 47, 1168
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 2 cut(s) 423, 1028
AfaI GTAC 4 cut(s) 288, 530, 1073, 1195
AfiI CCNNNNNNNGG 1 cut(s) 426
AhdI GACNNNNNGTC 1 cut(s) 838
AhlI ACTAGT 2 cut(s) 368, 1150
AjnI CCWGG 2 cut(s) 235, 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 214, 608, 676, 861, 1189
AluI AGCT 5 cut(s) 214, 608, 676, 861, 1189
Alw21I GWGCWC 2 cut(s) 735, 1191
Alw26I GTCTC 3 cut(s) 395, 772, 1259
AlwI GGATC 1 cut(s) 73
AoxI GGCC 4 cut(s) 431, 515, 564, 644
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 423, 1028
ArsI GACNNNNNNTTYG 2 cut(s) 1198, 1230
Asp700I GAANNNNTTC 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 2 cut(s) 644, 805
AsuHPI GGTGA 5 cut(s) 112, 156, 224, 409, 967
AvaII GGWCC 1 cut(s) 805
BanI GGYRCC 2 cut(s) 47, 1168
BanII GRGCYC 1 cut(s) 1191
BbsI GAAGAC 2 cut(s) 636, 860
Bbv12I GWGCWC 2 cut(s) 735, 1191
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 806, 1130, 1185
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 237, 1034
BclI TGATCA 3 cut(s) 117, 312, 534
BcoDI GTCTC 3 cut(s) 395, 772, 1259
BcuI ACTAGT 2 cut(s) 368, 1150
BfaI CTAG 6 cut(s) 186, 369, 726, 1151, 1184, 1202
BisI GCNGC 2 cut(s) 182, 221
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 2 cut(s) 183, 222
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 237, 1034
Bme18I GGWCC 1 cut(s) 805
BmeRI GACNNNNNGTC 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 644, 805
BmiI GGNNCC 3 cut(s) 49, 806, 1170
BmrFI CCNGG 2 cut(s) 237, 1034
BmsI GCATC 4 cut(s) 212, 283, 864, 1229
BpiI GAAGAC 2 cut(s) 636, 860
Bpu10I CCTNAGC 3 cut(s) 215, 435, 506
Bpu1102I GCTNAGC 1 cut(s) 677
BpuEI CTTGAG 2 cut(s) 41, 1241
BsaJI CCNNGG 2 cut(s) 35, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 909
BseBI CCWGG 2 cut(s) 237, 1034
BseDI CCNNGG 2 cut(s) 35, 235
BseGI GGATG 2 cut(s) 537, 1074
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 3 cut(s) 426, 750, 791
BseNI ACTGG 1 cut(s) 943
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 4 cut(s) 433, 517, 566, 646
BshNI GGYRCC 2 cut(s) 47, 1168
BsiHKAI GWGCWC 2 cut(s) 735, 1191
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 3 cut(s) 395, 772, 1259
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 925
BsnI GGCC 4 cut(s) 433, 517, 566, 646
Bsp1286I GDGCHC 2 cut(s) 735, 1191
Bsp143I GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
Bsp1720I GCTNAGC 1 cut(s) 677
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 220
BspANI GGCC 4 cut(s) 433, 517, 566, 646
BspCNI CTCAG 3 cut(s) 427, 749, 792
BspLI GGNNCC 3 cut(s) 49, 806, 1170
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 47, 1168
BsrDI GCAATG 1 cut(s) 909
BsrI ACTGG 1 cut(s) 943
BssECI CCNNGG 2 cut(s) 35, 235
BssMI GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 237, 1034
Bst4CI ACNGT 5 cut(s) 766, 899, 916, 1198, 1210
Bst6I CTCTTC 2 cut(s) 995, 1233
BstDEI CTNAG 7 cut(s) 215, 435, 506, 677, 695, 736, 800
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 537, 1074
BstHHI GCGC 1 cut(s) 925
BstKTI GATC 7 cut(s) 30, 68, 120, 164, 315, 537, 825
BstMAI GTCTC 3 cut(s) 395, 772, 1259
BstMBI GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
BstMWI GCNNNNNNNGC 2 cut(s) 31, 220
BstNI CCWGG 2 cut(s) 237, 1034
BstSCI CCNGG 2 cut(s) 235, 1032
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 636, 860
BstXI CCANNNNNNTGG 1 cut(s) 580
BsuRI GGCC 4 cut(s) 433, 517, 566, 646
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 537, 1074
BtsIMutI CAGTG 1 cut(s) 921
CfoI GCGC 1 cut(s) 925
Cfr13I GGNCC 2 cut(s) 644, 805
Csp6I GTAC 4 cut(s) 287, 529, 1072, 1194
CviAII CATG 5 cut(s) 36, 73, 142, 196, 310
CviQI GTAC 4 cut(s) 287, 529, 1072, 1194
DdeI CTNAG 7 cut(s) 215, 435, 506, 677, 695, 736, 800
DpnI GATC 7 cut(s) 29, 67, 119, 163, 314, 536, 824
DpnII GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
DriI GACNNNNNGTC 1 cut(s) 838
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 995, 1233
Eam1105I GACNNNNNGTC 1 cut(s) 838
EarI CTCTTC 2 cut(s) 995, 1233
Ecl136II GAGCTC 1 cut(s) 1189
Eco130I CCWWGG 1 cut(s) 35
Eco147I AGGCCT 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 1191
Eco32I GATATC 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 1189
EcoICRI GAGCTC 1 cut(s) 1189
EcoO109I RGGNCCY 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 235, 1032
EcoRV GATATC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 1191
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 5 cut(s) 39, 76, 145, 199, 313
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 1 cut(s) 448
FatI CATG 5 cut(s) 35, 72, 141, 195, 309
FbaI TGATCA 3 cut(s) 117, 312, 534
Fnu4HI GCNGC 2 cut(s) 182, 221
FokI GGATG 2 cut(s) 524, 1061
FriOI GRGCYC 1 cut(s) 1191
Fsp4HI GCNGC 2 cut(s) 182, 221
FspBI CTAG 6 cut(s) 186, 369, 726, 1151, 1184, 1202
GlaI GCGC 1 cut(s) 924
GluI GCNGC 2 cut(s) 182, 221
HaeIII GGCC 4 cut(s) 433, 517, 566, 646
HhaI GCGC 1 cut(s) 925
Hin1II CATG 5 cut(s) 39, 76, 145, 199, 313
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HinfI GANTC 6 cut(s) 7, 265, 388, 1013, 1144, 1252
HphI GGTGA 5 cut(s) 112, 156, 224, 409, 967
Hpy166II GTNNAC 1 cut(s) 1006
Hpy188I TCNGA 9 cut(s) 12, 246, 395, 408, 641, 673, 873, 1048, 1084
Hpy188III TCNNGA 3 cut(s) 269, 1024, 1133
Hpy8I GTNNAC 1 cut(s) 1006
Hpy99I CGWCG 1 cut(s) 673
HpyAV CCTTC 5 cut(s) 118, 270, 482, 1166, 1287
HpyCH4III ACNGT 5 cut(s) 766, 899, 916, 1198, 1210
HpyCH4V TGCA 4 cut(s) 141, 329, 902, 1269
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 220
HpyF3I CTNAG 7 cut(s) 215, 435, 506, 677, 695, 736, 800
Hsp92II CATG 5 cut(s) 39, 76, 145, 199, 313
HspAI GCGC 1 cut(s) 923
Ksp22I TGATCA 3 cut(s) 117, 312, 534
Kzo9I GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
LmnI GCTCC 2 cut(s) 211, 673
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 4 cut(s) 212, 283, 864, 1229
MaeI CTAG 6 cut(s) 186, 369, 726, 1151, 1184, 1202
MaeIII GTNAC 3 cut(s) 415, 973, 1204
MalI GATC 7 cut(s) 29, 67, 119, 163, 314, 536, 824
MboI GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
MboII GAAGA 9 cut(s) 16, 243, 641, 757, 860, 946, 982, 1046, 1250
MfeI CAATTG 1 cut(s) 1098
MhlI GDGCHC 2 cut(s) 735, 1191
MlyI GAGTC 2 cut(s) 397, 1261
MmeI TCCRAC 2 cut(s) 561, 651
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 2 cut(s) 795, 827
MslI CAYNNNNRTG 1 cut(s) 726
MspR9I CCNGG 2 cut(s) 237, 1034
MunI CAATTG 1 cut(s) 1098
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 2 cut(s) 237, 1034
MwoI GCNNNNNNNGC 2 cut(s) 31, 220
NcoI CCATGG 1 cut(s) 35
NdeII GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
NlaIII CATG 5 cut(s) 39, 76, 145, 199, 313
NlaIV GGNNCC 3 cut(s) 49, 806, 1170
NmuCI GTSAC 3 cut(s) 415, 973, 1204
PceI AGGCCT 1 cut(s) 517
PctI GAATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 4 cut(s) 7, 265, 1013, 1144
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 2 cut(s) 183, 222
PleI GAGTC 2 cut(s) 396, 1260
PpsI GAGTC 2 cut(s) 396, 1260
PsiI TTATAA 2 cut(s) 851, 929
Psp124BI GAGCTC 1 cut(s) 1191
Psp6I CCWGG 2 cut(s) 235, 1032
PspGI CCWGG 2 cut(s) 235, 1032
PspN4I GGNNCC 3 cut(s) 49, 806, 1170
PspPI GGNCC 2 cut(s) 644, 805
RsaI GTAC 4 cut(s) 288, 530, 1073, 1195
RsaNI GTAC 4 cut(s) 287, 529, 1072, 1194
RseI CAYNNNNRTG 1 cut(s) 726
SacI GAGCTC 1 cut(s) 1191
SaqAI TTAA 2 cut(s) 795, 827
SatI GCNGC 2 cut(s) 182, 221
Sau3AI GATC 7 cut(s) 27, 65, 117, 161, 312, 534, 822
Sau96I GGNCC 2 cut(s) 644, 805
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 2 cut(s) 397, 1261
ScrFI CCNGG 2 cut(s) 237, 1034
SduI GDGCHC 2 cut(s) 735, 1191
SfaNI GCATC 4 cut(s) 212, 283, 864, 1229
SinI GGWCC 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 20, 1256
SmoI CTYRAG 2 cut(s) 20, 1256
SpeI ACTAGT 2 cut(s) 368, 1150
SseBI AGGCCT 1 cut(s) 517
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 357
SspMI CTAG 6 cut(s) 186, 369, 726, 1151, 1184, 1202
SstI GAGCTC 1 cut(s) 1191
StuI AGGCCT 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 235, 1032
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 5 cut(s) 766, 899, 916, 1198, 1210
TaqI TCGA 4 cut(s) 263, 291, 1057, 1212
TatI WGTACW 2 cut(s) 286, 1071
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 4 cut(s) 7, 265, 1013, 1144
Tru1I TTAA 2 cut(s) 795, 827
Tru9I TTAA 2 cut(s) 795, 827
TscAI CASTG 1 cut(s) 921
TseFI GTSAC 3 cut(s) 415, 973, 1204
TseI GCWGC 1 cut(s) 181
Tsp45I GTSAC 3 cut(s) 415, 973, 1204
TspDTI ATGAA 8 cut(s) 17, 89, 91, 142, 161, 181, 946, 952
TspGWI ACGGA 3 cut(s) 403, 610, 1240
TspRI CASTG 1 cut(s) 921
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 2 cut(s) 423, 1028
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 6 cut(s) 186, 369, 726, 1151, 1184, 1202
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.