Rmu_sc0012638.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012638.1
OG0000475
Physical Location & Seq
Reverse (-)
7250 .. 7939
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012638.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atggcccagatgttctccaacaacttgatacaactgggacttctttatctgatacctctccatctcctagagctttgcagtgcttttttgattgtcgatttggcctcaaagttaggaggaaaagggaagttcggggaggtatctggtggtggcagtgttaccagaatggtgcgcttcagaggaactcttgtcacatccatctgggtacttttcttatcaacttgtactgtagttggatcagtatggttagtctcagtatactatgttctattgagaaactttgggtactacaatacatattgtagagtgctatacaaggcagcttgtatggcactgctagcaaattacttagagtggggtgctatatggaacatgagcattgtaatttcaatactggagaacagacatggggctaatgcactcatgttctcagcccatctgagcagaggtagagaacggcggcaaggacttgttttgatgcttattttcggtctttggggactcggtttaaggctggcatgcctcttctttaaatgctatgaaggaaaaggcggaattgttgctcagatgggccttttctgtaccggcaatgtggtacagtgggttgcgtacatgatttattcctacaattgcaaaatcctgatctcagagaagagagttgatgtggaaattggactagttgagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.65

Weight (kDa)

9.31

Isoelectric Point (pI)

25.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000475)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23830 AT1G23840 AT1G23850
fragaria_vesca FvH4_3g33230 FvH4_4g34710 FvH4_4g34711 FvH4_4g34720 FvH4_4g34730 FvH4_4g34740 FvH4_4g34760 FvH4_4g34761 FvH4_6g20500 FvH4_6g20520
malus_domestica MD13G1090000.v1.1 MD16G1090300.v1.1 MD16G1090400.v1.1 MD16G1090500.v1.1 MD16G1090600.v1.1
prunus_persica Prupe.1G255400_v2.0.a1 Prupe.1G255600_v2.0.a1 Prupe.1G255700_v2.0.a1 Prupe.1G255800_v2.0.a1
pyrus_communis pycom16g07740 pycom16g07760
rosa_chinensis RchiOBHm_Chr3g0476381 RchiOBHm_Chr4g0444081 RchiOBHm_Chr4g0444091 RchiOBHm_Chr4g0444101
rosa_laevigata RLG00000005856 RLG00000005857 RLG00000005858 RLG00000005859 RLG00000005860 RLG00000023773 RLG00000023775
rosa_multiflora Rmu_co8429785.1_g000001 Rmu_sc0000114.1_g000007 Rmu_sc0002177.1_g000009 Rmu_sc0012638.1_g000002 Rmu_sc0012638.1_g000003
rosa_roxburghii Rroxscaffold_5G00384630 Rroxscaffold_5G00384650 Rroxscaffold_5G00384660 Rroxscaffold_5G00384670 Rroxscaffold_5G00384680 Rroxscaffold_5G00384690 Rroxscaffold_6G00405320 Rroxscaffold_6G00405350
rosa_rugosa Rorug03G0153900 Rorug03G0154000 Rorug04G0349500 Rorug04G0349500 Rorug04G0349500
rosa_samantha Rh3AG205100 Rh3BG236700 Rh3CG231200 Rh3DG231000 Rh4AG410200 Rh4AG410300 Rh4AG410400 Rh4AG410500 Rh4AG410600 Rh4BG421300 Rh4BG421400 Rh4BG421500 Rh4BG421600 Rh4BG421700 Rh4BG421800 Rh4BG421900 Rh4BG422000 Rh4CG435700 Rh4CG435800 Rh4CG435900 Rh4CG436000 Rh4CG436100 Rh4CG436200 Rh4CG436300 Rh4CG436400 Rh4DG416600 Rh4DG416800 Rh4DG416900 Rh4DG417000 Rh4DG417100 Rh4DG417200 Rh4DG417300
rosa_wichuraiana Rw3G018640 Rw4G035240 Rw4G035250 Rw4G035260 Rw4G035270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 460, 552
AclWI GGATC 1 cut(s) 244
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 6 cut(s) 207, 226, 287, 583, 597, 611
AgsI TTSAA 1 cut(s) 390
AhlI ACTAGT 1 cut(s) 676
AluBI AGCT 2 cut(s) 73, 323
AluI AGCT 2 cut(s) 73, 323
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 244
AoxI GGCC 3 cut(s) 3, 102, 571
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 4, 571
AsuNHI GCTAGC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 332
BccI CCATC 4 cut(s) 69, 206, 444, 562
BceAI ACGGC 1 cut(s) 473
BcoDI GTCTC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 676
BfaI CTAG 3 cut(s) 68, 338, 677
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 2 cut(s) 321, 461
BlsI GCNGC 2 cut(s) 322, 462
BmgT120I GGNCC 2 cut(s) 4, 571
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 468
BmtI GCTAGC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 39, 399
Bse3DI GCAATG 1 cut(s) 595
BseGI GGATG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 5 cut(s) 267, 431, 444, 578, 660
BseNI ACTGG 2 cut(s) 39, 399
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 3 cut(s) 5, 104, 573
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 2 cut(s) 51, 513
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 51, 513
BsnI GGCC 3 cut(s) 5, 104, 573
Bsp143I GATC 2 cut(s) 236, 642
BspACI CCGC 2 cut(s) 460, 552
BspANI GGCC 3 cut(s) 5, 104, 573
BspCNI CTCAG 5 cut(s) 266, 432, 443, 577, 659
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 2 cut(s) 39, 399
BssAI RCCGGY 1 cut(s) 584
BssMI GATC 2 cut(s) 236, 642
BssNAI GTATAC 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 229, 600
Bst6I CTCTTC 2 cut(s) 530, 647
BstC8I GCNNGC 3 cut(s) 339, 516, 520
BstDEI CTNAG 6 cut(s) 253, 349, 430, 440, 564, 646
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 239, 645
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 2 cut(s) 236, 642
BstMWI GCNNNNNNNGC 2 cut(s) 329, 338
BstNSI RCATGY 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 259
BsuRI GGCC 3 cut(s) 5, 104, 573
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 3 cut(s) 85, 160, 332
BtsIMutI CAGTG 4 cut(s) 85, 160, 332, 605
Cac8I GCNNGC 3 cut(s) 339, 516, 520
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 2 cut(s) 4, 571
Csp6I GTAC 6 cut(s) 206, 225, 286, 582, 596, 610
CviAII CATG 5 cut(s) 373, 407, 424, 519, 613
CviJI RGCY 8 cut(s) 5, 73, 104, 323, 413, 434, 514, 573
CviKI_1 RGCY 8 cut(s) 5, 73, 104, 323, 413, 434, 514, 573
CviQI GTAC 6 cut(s) 206, 225, 286, 582, 596, 610
DdeI CTNAG 6 cut(s) 253, 349, 430, 440, 564, 646
DpnI GATC 2 cut(s) 238, 644
DpnII GATC 2 cut(s) 236, 642
DraI TTTAAA 1 cut(s) 532
Eam1104I CTCTTC 2 cut(s) 530, 647
EarI CTCTTC 2 cut(s) 530, 647
EciI GGCGGA 1 cut(s) 567
Eco57I CTGAAG 1 cut(s) 160
FaeI CATG 5 cut(s) 376, 410, 427, 522, 616
FaqI GGGAC 2 cut(s) 51, 513
FatI CATG 5 cut(s) 372, 406, 423, 518, 612
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 321, 461
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 321, 461
FspBI CTAG 3 cut(s) 68, 338, 677
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 321, 461
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 5, 104, 573
HapII CCGG 1 cut(s) 585
HhaI GCGC 1 cut(s) 174
Hin1II CATG 5 cut(s) 376, 410, 427, 522, 616
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 501
HpaII CCGG 1 cut(s) 585
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 5 cut(s) 51, 179, 441, 567, 649
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 229, 600
HpyCH4V TGCA 3 cut(s) 78, 419, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 338
HpyF3I CTNAG 6 cut(s) 253, 349, 430, 440, 564, 646
Hsp92II CATG 5 cut(s) 376, 410, 427, 522, 616
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 236, 642
LpnPI CCDG 9 cut(s) 20, 20, 129, 175, 187, 380, 500, 598, 653
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 68, 338, 677
MaeIII GTNAC 2 cut(s) 157, 190
MalI GATC 2 cut(s) 238, 644
MboI GATC 2 cut(s) 236, 642
MboII GAAGA 2 cut(s) 517, 664
MfeI CAATTG 1 cut(s) 628
MluCI AATT 5 cut(s) 343, 384, 555, 628, 669
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 2 cut(s) 42, 214
MnlI CCTC 7 cut(s) 66, 110, 115, 130, 173, 440, 533
MseI TTAA 2 cut(s) 509, 531
MspI CCGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 628
MwoI GCNNNNNNNGC 2 cut(s) 329, 338
NdeII GATC 2 cut(s) 236, 642
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 5 cut(s) 376, 410, 427, 522, 616
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 522
PaeI GCATGC 1 cut(s) 522
PkrI GCNGC 2 cut(s) 322, 462
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 4, 571
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
RsaI GTAC 6 cut(s) 207, 226, 287, 583, 597, 611
RsaNI GTAC 6 cut(s) 206, 225, 286, 582, 596, 610
SaqAI TTAA 2 cut(s) 509, 531
SatI GCNGC 2 cut(s) 321, 461
Sau3AI GATC 2 cut(s) 236, 642
Sau96I GGNCC 2 cut(s) 4, 571
SchI GAGTC 1 cut(s) 495
SetI ASST 5 cut(s) 58, 75, 141, 325, 451
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 228
SpeI ACTAGT 1 cut(s) 676
SphI GCATGC 1 cut(s) 522
Sse9I AATT 5 cut(s) 343, 384, 555, 628, 669
SsiI CCGC 2 cut(s) 460, 552
SspMI CTAG 3 cut(s) 68, 338, 677
TaaI ACNGT 2 cut(s) 229, 600
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 479
TasI AATT 5 cut(s) 343, 384, 555, 628, 669
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 509, 531
Tru9I TTAA 2 cut(s) 509, 531
TscAI CASTG 4 cut(s) 85, 160, 339, 605
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 555
TspRI CASTG 4 cut(s) 85, 160, 339, 605
XceI RCATGY 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 3 cut(s) 68, 338, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.