FvH4_1g02210

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000251
Physical Location & Seq
Reverse (-)
1180289 .. 1185086
4798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02210.t1

Sequence Viewer

Length: 2811 bp
ATGGTGAGGGCAAAACTTATCTTAATCTGCCAGTGGGGTGGCGAATTTGTCAAGAAGGATGATGGAACCATGTGCTATACTGGAGGGGATGCGCATGCTGTAGATATCAATCATGAAACCTTATTTGATGATCTCAAGTTGAAGTTAGCTGAAATATGCAATTTAGAGTATAAATCTTTGTCCATCAAGTATTTTCTACCAGGAAATAGGCGAACTCTCATCACGTTATCCAGTGATAGGGACCTGAAAAGGATGTATGAGTTCCATGGTAATGCAGTAACTGGTGATGTTTTTGTCATAGGAAAAGCTGGCTTCGATGGTGATGAAGCCTTAAACACACTAAAAAGGGCATGTGGGTTAAAAGTGGCAGACTCTGTGATTCCTATTGCTGCCTCCAGTACTTCAGCTGTTGTTTTTCACGCTGATGCTAATCGTCCTGTTGCAGCTAATTCACCAATTGCACCAAGTAATGTTAATACCACAGTTGTTCCTGCTGCTTCAAATATTACTCCAGATGTCCCTTCCCTTCGTCCTATTCCACAACAAGCAGGATCTGTTGTATCTGACAAAGAACGGACTCAAAGCCCAAGTGGATTGACTCATACTGCTCACATTTCCCCTGCCTTTACTGATCATGCAGATGCTACTACCTCAATTCCAACCGGTTCCATTTCTCTTGCTGCTGATGCAAGCATCTACAGCTTGGACATATATGGTGTGGACTCTACCCCTGCTGGTGTTATTAGTTCCACTCCAAATGGTTCCATTTCTGTTGCTGCTGATGCAAGTGTCCACAGCTTGGACATAATTGATATGGACTGCACCCCTGCTGATTCCGTTAAGAAACGAAGGCGCACTGCTGCATGGAAAATTGGTCCAGATGGCCCTACCATTGTTTCTATCAATGAGGATATTGGGGATGAAAGAAATTCTGTGTCCAGGAAGAAGAATACTCTCAACTTTAAAACTGCTCCAGAAACTGATAATGAGGATCAGGAAGAGGAGATTGTGCCGTGTAATAGCATTGACCATAATCAGGACATTCTACGCCCGTCAAATGATGTTCTGTCTGAAGAGTTGGTCACATTGTGGAAAGATGGTATCACTGGAGTTGGACATGAGTTCCCAAGTGTTAATGAATTTCGCGATGTACTGCAAAAATATGCCATTGCTCATCGTTTTATGTATAAGTTCAAGAAAAACGACACTAACCGTGCAAGTTGCATATGTATAGCTGAAGCCTGTTCTTGGAGAATTCAAGCATCCTGGGACTCATCTTTGGAAAAGTTTGTGGTAAAGAAGATGGAGAAAAGGCATACATGTGAAAGGGAGACATGGAAGTTTTATCATCCGAAAAAAAATTGGTTAGTTAGTATCATTAAAGACAGATTAACTGATAATCCACATCTGAAGCCGAAAGAAATTGTCAGTAGCATTCTTCAGGATTTTGGAATTACGGTGAACTCTACTCAAGTACGGCGTGGAATTGAAGATGCAAGGGAACAACTTATGGGTTCTTATAAAGAAGCTTATAACCAGTTACCTTGGTTTTGTGAGAAAATGGCAGAGGCAAATCCTGGTAGTAATATTAGGCTTTTCACTGGTGAGGATAAGAGATTTCAGCGTCTCTTTGAATGCTTTCATGCATCAAGACATGGTTTTCAGAATGGTTGCCGACCTATTCTTTTTCTTGATTCTATGCCTTTAAGATCAAAATTCCATGAGACATTTATTGCAGCTACTGCTTTGGATGGGGATGATGGTGCATTCCCGGTTGCATTTGCAATAGTAGACGCTGAGAATGATGATAACTGGCGTTGGTTTCTGGAGCAATTAAGATCATCTGTTTCGACCACACAGTCCTTAACTATTGTCTCTGATAGAGAGAAAGGGCTGAAGAAATTAGTGACTGAGGTATTTGAGAATGCTCAGCATGGCTACTCTATGCACCACCTTCTAAGAAGCTTCAAGAAAAACTTAAGGCCGCCATTTCATAAAGATGGGAAGGGTTCTTTGCTAACTTGTTTCATGGCTGCCGCCCAGTCACTTCGACTTGATGGTTTTAAGTATTTTATGGATCAAATTAAACAGGTTTCATCACAAGGTTATGACTGGGTCGTCCAGATTGAACAAGAATGTTGGACAAATGTATTTTTCAGAGGTGAGCACTACAATCATATTACTGTCGACATTGCAGAGACATACGCCAACTGGATAGAGGAAATGCGAGCATTGCCCATTATACGGAAGATAGAAGTGTTAAGCTCTAAGCTGATGGAATTGTTAAACACTCGTCGAACTGATTCAAGCACTTGGTCTACACAGCTTACTCCATCCAAGGAGGAAAAACTGCAAGAAAAGATTCTACAAGCAAGTCGCCTTAAAGTATTATTTTCAACTGATACTCTTTTTGAGGTTCACAATGATTCCATCAATGTTGTGGATCTCAACAAAAGGGAGTGTAGTTGTCTGGATTGGAAATCAACTGGGCTACCTTGCTGCCACGCTATTGCTGTTTTCAACTGCAAAGGTAGGAATGCGTATGATTTTTGTTCAAGATACTATAAAGTTGACAACTATCATACAACTTATTCGGAATCCATAACCCCTGTGGCGGTGCCTTTTAAGCCTTTGGATGGCGATAAAATTGAATCGGAAGCTGAGAATGTACTTCCTCCTTCCATCTCCAGACCACAAAGCCATGATAAGGAAAACCAGAAGAAAACAAAAGGTGTGGCCAAAAGGGAAGTGTTTTGCTCAAACTGCAAGGAAACGGGACATAATAAAACTACATGCAAGGCAGGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

937

Amino Acids

104.96

Weight (kDa)

6.42

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 25 - 89 1.5e-07 PB1 domain
DBD_Tnp_Mut PF03108 368 - 428 1e-16 MuDR family transposase
MULE PF10551 562 - 653 8e-14 MULE transposase domain
SWIM PF04434 814 - 843 1.7e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1521, 1533
AasI GACNNNNNNGTC 2 cut(s) 1858, 2117
Acc16I TGCGCA 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 2617
AccB7I CCANNNNNTGG 1 cut(s) 799
AccI GTMKAC 3 cut(s) 1791, 2187, 2318
AccII CGCG 1 cut(s) 1146
AciI CCGC 3 cut(s) 1985, 2037, 2615
AclWI GGATC 4 cut(s) 559, 999, 2085, 2451
AcoI YGGCCR 1 cut(s) 2736
AcsI RAATTY 5 cut(s) 44, 928, 1139, 1254, 1715
AcuI CTGAAG 6 cut(s) 387, 1092, 1257, 1424, 1430, 1916
AdeI CACNNNGTG 1 cut(s) 1089
AfaI GTAC 4 cut(s) 400, 1152, 1476, 2670
AfiI CCNNNNNNNGG 8 cut(s) 237, 799, 1036, 1248, 2244, 2614, 2636, 2707
AflII CTTAAG 1 cut(s) 1978
AflIII ACRYGT 1 cut(s) 1319
AgeI ACCGGT 1 cut(s) 662
AjnI CCWGG 4 cut(s) 199, 938, 1265, 1576
Alw21I GWGCWC 1 cut(s) 2169
Alw26I GTCTC 5 cut(s) 1325, 1631, 1718, 1879, 2192
AlwI GGATC 4 cut(s) 559, 999, 2085, 2451
AlwNI CAGNNNCTG 5 cut(s) 281, 374, 554, 980, 1742
AoxI GGCC 3 cut(s) 883, 1982, 2736
ApeKI GCWGC 9 cut(s) 389, 443, 494, 680, 776, 860, 1736, 2033, 2499
ApoI RAATTY 5 cut(s) 44, 928, 1139, 1254, 1715
AsiGI ACCGGT 1 cut(s) 662
Asp700I GAANNNNTTC 3 cut(s) 1638, 2302, 2361
AspLEI GCGC 2 cut(s) 94, 855
AspS9I GGNCC 3 cut(s) 241, 875, 884
AsuC2I CCSGG 1 cut(s) 1772
AsuHPI GGTGA 7 cut(s) 16, 296, 332, 444, 1471, 1616, 2174
AvaII GGWCC 2 cut(s) 241, 875
BalI TGGCCA 1 cut(s) 2738
BanI GGYRCC 1 cut(s) 2617
Bbv12I GWGCWC 1 cut(s) 2169
BbvI GCAGC 9 cut(s) 376, 455, 481, 667, 763, 847, 1748, 2020, 2486
BceAI ACGGC 2 cut(s) 997, 1493
BciT130I CCWGG 4 cut(s) 201, 940, 1267, 1578
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 1772
BcoDI GTCTC 5 cut(s) 1325, 1631, 1718, 1879, 2192
BfmI CTRYAG 2 cut(s) 99, 697
BfrI CTTAAG 1 cut(s) 1978
BlpI GCTNAGC 1 cut(s) 1929
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 5 cut(s) 201, 940, 1267, 1578, 1772
Bme18I GGWCC 2 cut(s) 241, 875
BmgT120I GGNCC 3 cut(s) 241, 875, 884
BmiI GGNNCC 5 cut(s) 67, 242, 667, 763, 2619
BmrFI CCNGG 5 cut(s) 201, 940, 1267, 1578, 1772
BmrI ACTGGG 3 cut(s) 2035, 2122, 2496
BmsI GCATC 9 cut(s) 79, 415, 631, 676, 702, 772, 1271, 1483, 1655
BpmI CTGGAG 7 cut(s) 102, 379, 495, 957, 1128, 1847, 2671
Bpu1102I GCTNAGC 1 cut(s) 1929
BpuEI CTTGAG 2 cut(s) 119, 1455
BpuMI CCSGG 1 cut(s) 1772
BsaBI GATNNNNATC 2 cut(s) 108, 429
BsaJI CCNNGG 4 cut(s) 265, 1266, 1544, 2337
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 8 cut(s) 237, 799, 1036, 1248, 2244, 2614, 2636, 2707
Bse118I RCCGGY 1 cut(s) 662
Bse3DI GCAATG 3 cut(s) 1167, 2190, 2231
Bse8I GATNNNNATC 2 cut(s) 108, 429
BseBI CCWGG 4 cut(s) 201, 940, 1267, 1578
BseDI CCNNGG 4 cut(s) 265, 1266, 1544, 2337
BseJI GATNNNNATC 2 cut(s) 108, 429
BseLI CCNNNNNNNGG 8 cut(s) 237, 799, 1036, 1248, 2244, 2614, 2636, 2707
BseMI GCAATG 3 cut(s) 1167, 2190, 2231
BseMII CTCAG 4 cut(s) 1788, 1902, 1943, 2652
BseRI GAGGAG 1 cut(s) 1016
BseXI GCAGC 9 cut(s) 376, 455, 481, 667, 763, 847, 1748, 2020, 2486
BsgI GTGCAG 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 1146
BshFI GGCC 3 cut(s) 885, 1984, 2738
BshNI GGYRCC 1 cut(s) 2617
BshTI ACCGGT 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 2169
BsiSI CCGG 2 cut(s) 663, 1772
BslFI GGGAC 4 cut(s) 254, 503, 1283, 2790
BslI CCNNNNNNNGG 8 cut(s) 237, 799, 1036, 1248, 2244, 2614, 2636, 2707
BsmAI GTCTC 5 cut(s) 1325, 1631, 1718, 1879, 2192
BsmBI CGTCTC 1 cut(s) 1631
BsmFI GGGAC 4 cut(s) 254, 503, 1283, 2790
BsmI GAATGC 5 cut(s) 1434, 1640, 1766, 1930, 2542
BsnI GGCC 3 cut(s) 885, 1984, 2738
Bsp1286I GDGCHC 1 cut(s) 2169
Bsp143I GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
Bsp1720I GCTNAGC 1 cut(s) 1929
Bsp19I CCATGG 1 cut(s) 265
Bsp68I TCGCGA 1 cut(s) 1146
BspACI CCGC 3 cut(s) 1985, 2037, 2615
BspANI GGCC 3 cut(s) 885, 1984, 2738
BspCNI CTCAG 4 cut(s) 1789, 1903, 1942, 2653
BspFNI CGCG 1 cut(s) 1146
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 67, 242, 667, 763, 2619
BspPI GGATC 4 cut(s) 559, 999, 2085, 2451
BspT107I GGYRCC 1 cut(s) 2617
BspTI CTTAAG 1 cut(s) 1978
BsrDI GCAATG 3 cut(s) 1167, 2190, 2231
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 4 cut(s) 265, 1266, 1544, 2337
BssMI GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
BssT1I CCWWGG 3 cut(s) 265, 1544, 2337
Bst2UI CCWGG 4 cut(s) 201, 940, 1267, 1578
Bst4CI ACNGT 5 cut(s) 484, 1214, 1459, 1860, 2185
Bst6I CTCTTC 2 cut(s) 993, 1068
BstAFI CTTAAG 1 cut(s) 1978
BstAPI GCANNNNNTGC 1 cut(s) 1742
BstC8I GCNNGC 5 cut(s) 96, 310, 691, 2229, 2803
BstDEI CTNAG 7 cut(s) 1797, 1911, 1929, 1958, 2268, 2661, 2808
BstDSI CCRYGG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 1146
BstHHI GCGC 2 cut(s) 94, 855
BstKTI GATC 8 cut(s) 133, 554, 634, 994, 1712, 1841, 2080, 2446
BstMAI GTCTC 5 cut(s) 1325, 1631, 1718, 1879, 2192
BstMBI GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
BstMWI GCNNNNNNNGC 8 cut(s) 686, 699, 782, 1742, 2233, 2626, 2763, 2802
BstNI CCWGG 4 cut(s) 201, 940, 1267, 1578
BstNSI RCATGY 4 cut(s) 98, 354, 1323, 2796
BstSCI CCNGG 5 cut(s) 199, 938, 1265, 1576, 1770
BstSFI CTRYAG 2 cut(s) 99, 697
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 9 cut(s) 376, 455, 481, 667, 763, 847, 1748, 2020, 2486
BstX2I RGATCY 2 cut(s) 551, 2443
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 2 cut(s) 551, 2443
BsuRI GGCC 3 cut(s) 885, 1984, 2738
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 1161
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 5 cut(s) 38, 238, 855, 1104, 1599
BtuMI TCGCGA 1 cut(s) 1146
Cac8I GCNNGC 5 cut(s) 96, 310, 691, 2229, 2803
CaiI CAGNNNCTG 5 cut(s) 281, 374, 554, 980, 1742
CciI TCATGA 1 cut(s) 112
CfoI GCGC 2 cut(s) 94, 855
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 3 cut(s) 241, 875, 884
CseI GACGC 2 cut(s) 1613, 1802
Csp6I GTAC 4 cut(s) 399, 1151, 1475, 2669
CspAI ACCGGT 1 cut(s) 662
CspCI CAANNNNNGTGG 2 cut(s) 2715, 2750
CviQI GTAC 4 cut(s) 399, 1151, 1475, 2669
DdeI CTNAG 7 cut(s) 1797, 1911, 1929, 1958, 2268, 2661, 2808
DpnI GATC 8 cut(s) 132, 553, 633, 993, 1711, 1840, 2079, 2445
DpnII GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
DraI TTTAAA 1 cut(s) 964
DraIII CACNNNGTG 1 cut(s) 1089
DrdI GACNNNNNNGTC 2 cut(s) 1858, 2117
DseDI GACNNNNNNGTC 2 cut(s) 1858, 2117
EaeI YGGCCR 1 cut(s) 2736
Eam1104I CTCTTC 2 cut(s) 993, 1068
EarI CTCTTC 2 cut(s) 993, 1068
Eco130I CCWWGG 3 cut(s) 265, 1544, 2337
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 241, 875
Eco57I CTGAAG 6 cut(s) 387, 1092, 1257, 1424, 1430, 1916
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 4 cut(s) 199, 938, 1265, 1576
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 265, 1544, 2337
EcoT22I ATGCAT 1 cut(s) 1648
ErhI CCWWGG 3 cut(s) 265, 1544, 2337
Esp3I CGTCTC 1 cut(s) 1631
FalI AAGNNNNNCTT 2 cut(s) 1961, 1993
FaqI GGGAC 4 cut(s) 254, 503, 1283, 2790
FauNDI CATATG 1 cut(s) 1226
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 3 cut(s) 1791, 2187, 2318
FspAI RTGCGCAY 1 cut(s) 93
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 854
GsuI CTGGAG 7 cut(s) 102, 379, 495, 957, 1128, 1847, 2671
HaeIII GGCC 3 cut(s) 885, 1984, 2738
HapII CCGG 2 cut(s) 663, 1772
HgaI GACGC 2 cut(s) 1613, 1802
HhaI GCGC 2 cut(s) 94, 855
Hin6I GCGC 2 cut(s) 92, 853
HinP1I GCGC 2 cut(s) 92, 853
HincII GTYRAC 2 cut(s) 2188, 2572
HindII GTYRAC 2 cut(s) 2188, 2572
HindIII AAGCTT 2 cut(s) 1527, 1963
HpaII CCGG 2 cut(s) 663, 1772
HphI GGTGA 7 cut(s) 16, 296, 332, 444, 1471, 1616, 2174
Hpy166II GTNNAC 8 cut(s) 721, 793, 1462, 1792, 2188, 2319, 2419, 2572
Hpy188I TCNGA 9 cut(s) 565, 1072, 1353, 1410, 1665, 1879, 2159, 2596, 2656
Hpy8I GTNNAC 8 cut(s) 721, 793, 1462, 1792, 2188, 2319, 2419, 2572
Hpy99I CGWCG 1 cut(s) 2298
HpyAV CCTTC 7 cut(s) 49, 531, 536, 843, 1964, 1999, 2688
HpyCH4III ACNGT 5 cut(s) 484, 1214, 1459, 1860, 2185
HpyCH4IV ACGT 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 8 cut(s) 686, 699, 782, 1742, 2233, 2626, 2763, 2802
HpyF3I CTNAG 7 cut(s) 1797, 1911, 1929, 1958, 2268, 2661, 2808
HpySE526I ACGT 1 cut(s) 224
HspAI GCGC 2 cut(s) 92, 853
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
LmnI GCTCC 2 cut(s) 976, 1828
Lsp1109I GCAGC 9 cut(s) 376, 455, 481, 667, 763, 847, 1748, 2020, 2486
LweI GCATC 9 cut(s) 79, 415, 631, 676, 702, 772, 1271, 1483, 1655
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 5 cut(s) 277, 1081, 1539, 1906, 2043
MalI GATC 8 cut(s) 132, 553, 633, 993, 1711, 1840, 2079, 2445
MboI GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 2 cut(s) 551, 2443
MhlI GDGCHC 1 cut(s) 2169
MlsI TGGCCA 1 cut(s) 2738
MluNI TGGCCA 1 cut(s) 2738
MlyI GAGTC 5 cut(s) 365, 571, 592, 716, 1265
MmeI TCCRAC 3 cut(s) 683, 1093, 2120
Mox20I TGGCCA 1 cut(s) 2738
Mph1103I ATGCAT 1 cut(s) 1648
MroXI GAANNNNTTC 3 cut(s) 1638, 2302, 2361
MscI TGGCCA 1 cut(s) 2738
MslI CAYNNNNRTG 5 cut(s) 270, 423, 639, 1320, 1998
Msp20I TGGCCA 1 cut(s) 2738
MspA1I CMGCKG 1 cut(s) 407
MspCI CTTAAG 1 cut(s) 1978
MspI CCGG 2 cut(s) 663, 1772
MspR9I CCNGG 5 cut(s) 201, 940, 1267, 1578, 1772
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 5 cut(s) 1434, 1640, 1766, 1930, 2542
MvaI CCWGG 4 cut(s) 201, 940, 1267, 1578
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 8 cut(s) 686, 699, 782, 1742, 2233, 2626, 2763, 2802
NciI CCSGG 1 cut(s) 1772
NcoI CCATGG 1 cut(s) 265
NdeI CATATG 1 cut(s) 1226
NdeII GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
NlaIV GGNNCC 5 cut(s) 67, 242, 667, 763, 2619
NmuCI GTSAC 3 cut(s) 1081, 1906, 2043
NruI TCGCGA 1 cut(s) 1146
NsbI TGCGCA 1 cut(s) 93
NsiI ATGCAT 1 cut(s) 1648
NspI RCATGY 4 cut(s) 98, 354, 1323, 2796
PaeI GCATGC 1 cut(s) 98
PagI TCATGA 1 cut(s) 112
PciI ACATGT 1 cut(s) 1319
PctI GAATGC 5 cut(s) 1434, 1640, 1766, 1930, 2542
PdmI GAANNNNTTC 3 cut(s) 1638, 2302, 2361
PfeI GAWTC 8 cut(s) 379, 833, 1694, 2303, 2362, 2426, 2597, 2651
PflFI GACNNNGTC 1 cut(s) 2114
PflMI CCANNNNNTGG 1 cut(s) 799
PfoI TCCNGGA 1 cut(s) 938
PinAI ACCGGT 1 cut(s) 662
PleI GAGTC 5 cut(s) 365, 571, 592, 716, 1265
PpsI GAGTC 5 cut(s) 365, 571, 592, 716, 1265
PpuMI RGGWCCY 1 cut(s) 241
PscI ACATGT 1 cut(s) 1319
PsiI TTATAA 2 cut(s) 1521, 1533
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 4 cut(s) 199, 938, 1265, 1576
PspGI CCWGG 4 cut(s) 199, 938, 1265, 1576
PspN4I GGNNCC 5 cut(s) 67, 242, 667, 763, 2619
PspPI GGNCC 3 cut(s) 241, 875, 884
PspPPI RGGWCCY 1 cut(s) 241
PstNI CAGNNNCTG 5 cut(s) 281, 374, 554, 980, 1742
PsuI RGATCY 2 cut(s) 551, 2443
PsyI GACNNNGTC 1 cut(s) 2114
PvuII CAGCTG 1 cut(s) 407
RruI TCGCGA 1 cut(s) 1146
RsaI GTAC 4 cut(s) 400, 1152, 1476, 2670
RsaNI GTAC 4 cut(s) 399, 1151, 1475, 2669
RseI CAYNNNNRTG 5 cut(s) 270, 423, 639, 1320, 1998
SalI GTCGAC 1 cut(s) 2186
Sau3AI GATC 8 cut(s) 130, 551, 631, 991, 1709, 1838, 2077, 2443
Sau96I GGNCC 3 cut(s) 241, 875, 884
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 5 cut(s) 365, 571, 592, 716, 1265
ScrFI CCNGG 5 cut(s) 201, 940, 1267, 1578, 1772
SduI GDGCHC 1 cut(s) 2169
SfaNI GCATC 9 cut(s) 79, 415, 631, 676, 702, 772, 1271, 1483, 1655
SfcI CTRYAG 2 cut(s) 99, 697
SinI GGWCC 2 cut(s) 241, 875
SmiMI CAYNNNNRTG 5 cut(s) 270, 423, 639, 1320, 1998
SmlI CTYRAG 3 cut(s) 134, 1470, 1978
SmoI CTYRAG 3 cut(s) 134, 1470, 1978
SphI GCATGC 1 cut(s) 98
SsiI CCGC 3 cut(s) 1985, 2037, 2615
SspI AATATT 2 cut(s) 505, 1588
StyD4I CCNGG 5 cut(s) 199, 938, 1265, 1576, 1770
StyI CCWWGG 3 cut(s) 265, 1544, 2337
TaaI ACNGT 5 cut(s) 484, 1214, 1459, 1860, 2185
TaiI ACGT 1 cut(s) 227
TaqI TCGA 5 cut(s) 315, 1850, 2050, 2187, 2296
TatI WGTACW 3 cut(s) 398, 1150, 2668
TauI GCSGC 2 cut(s) 1987, 2039
TfiI GAWTC 8 cut(s) 379, 833, 1694, 2303, 2362, 2426, 2597, 2651
TscAI CASTG 5 cut(s) 38, 238, 862, 1111, 1606
TseFI GTSAC 3 cut(s) 1081, 1906, 2043
TseI GCWGC 9 cut(s) 389, 443, 494, 680, 776, 860, 1736, 2033, 2499
Tsp45I GTSAC 3 cut(s) 1081, 1906, 2043
TspDTI ATGAA 8 cut(s) 129, 339, 936, 1152, 1631, 1982, 2017, 2085
TspGWI ACGGA 3 cut(s) 589, 826, 2260
TspRI CASTG 5 cut(s) 38, 238, 862, 1111, 1606
Tth111I GACNNNGTC 1 cut(s) 2114
Van91I CCANNNNNTGG 1 cut(s) 799
Vha464I CTTAAG 1 cut(s) 1978
VpaK11BI GGWCC 2 cut(s) 241, 875
XapI RAATTY 5 cut(s) 44, 928, 1139, 1254, 1715
XceI RCATGY 4 cut(s) 98, 354, 1323, 2796
XcmI CCANNNNNNNNNTGG 2 cut(s) 2437, 2608
XmiI GTMKAC 3 cut(s) 1791, 2187, 2318
XmnI GAANNNNTTC 3 cut(s) 1638, 2302, 2361
ZrmI AGTACT 1 cut(s) 400
Zsp2I ATGCAT 1 cut(s) 1648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.