Rw3G001000

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000251
Physical Location & Seq
Reverse (-)
805606 .. 810116
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G001000.1

Sequence Viewer

Length: 1893 bp
ATGTCGTGCAGTGTTTACAACACACCCGTGGAGACAAGTTTTAATGTGCGTCAGGATGAGGGGTTAGAATCCTGTGATACTTCTGCTCTTTCTGCCGATATATTCATGGAAGATCATTCTCTAGTTCCTGTACCCGATGATTCTCTAAGCTTGACAGACTATGCATTAGCTATTGGGCAAGAATTTCCTGATGTTGAAACCTGCCGAAGAGCATTGAAGGATGTTGCCATTGCAATGCATTTTGATCTTCGTATCGTCAAATCAGATCGAAGCCGGTTTATAGCCAAGTGCTCCAAAGAAGGCTGTCCATGGCGTGTCCATGTAGCAAAATGTCCTGGAGTTCCCACCTTTACAATAAGAACCCTGCATGGTGAGCATACCTGTGAAGGAGTCCGCCACCTTCATCATCAGCAAGCATCAGTAGGTTGGGTTGCTAGGTCTGTGGAAGCTCGAGTTCGGGATAATCCACGATATAAACCAAAAGAGATCTTGCAAGATATCCGTGATCAGCATGGGGTTGCTGTTTCTTACATGCAGGCGTGGCGTGGCAAGGAGCGTAGCATGGCAGCGCTTCATGGAACTCTTGAAGAAGGATATCGCCTTCTTCCTGCCTACTGTGAGCAAATAAGGAAAAACAATCCAGGAAGCATTGCTTCAGTTTTTGCCACTGGACAAGAAAATTGTTTCCAGCGGCTCTTTGTTTCCTACCGTGCATCAATTTATGGGTTTATACATGCGTGTAGACCACTTTTAGAACTTGACAAAGCACATCTTAAAGGCAAATACCTGGGTACATTACTCTGTGCTGCATCTGTTGATGCTGATGATGCATTATTTCCACTGGCAATAGCTATTGTTGATGTTGAAAGTGACGAGAATTGGATGTGGTTTATGTCAGAATTACGAAAGCTTCTTGGAGTAAACACTGACAACATGCCTAGACTTACAATACTCTCTGAAAGACAAAAGGGCATTGTGGAAGCCGTGGAAACTCATTTCCCAAGTGCCTTTCATGGTTTTTGTCTGCGTTATGTAAGTGAAAATTTTCGTGATACATTTAAGAACACAAAGTTGGTGAATATCTTCTGGAATGCTGTTTATGCTCTCACTGCAGTTGAATTTGAGAGCAAGATTGCAGAGATGATGGAGATCTCACAAGACGTGATTCCATGGTTTCAACACTTCCCTCCTCAACTTTGGGCTGTAGCATACTTTGAAGGTGTGCGATTTGGCCATTTTACCCTCGGGGTGACAGAGCTGCTGTATAATTGGGCCCTTGAATGCCATGAGCTCCCTATTGTGCAAATGATGGAGCATATTCGTCATCAGTTGGCATCGTGGTTTAATGATCGTAGGGATATGGGCATGAGGTTGACATCGATTCTAGTACCTTCTGCTGAGAAGCGAATTTTAGAGGCAATTGCTGATGCTCGCTGCTATCAAGTGCTTCGTGCAAATGAAGTTGAATTTGAAATTGTATCAACTGAACGGACAAATATCGTGGATATAAGAACTCGAGTGTGCTCATGTCGTCGTTGGCATATATATGGTTTACCTTGTGCGCATGCTGCTGCTGCACTTATTTCTTGTGGACACAATGTCCCTTTATTTGCTGAGCCTTGCTTCACAGTAGCAAGTTACAGAGAGACCTATTCACAAATGATTCATCCTATTCCAGATAAGAGCTTATGGAATGAGCCCAGTGAAGGAACAGAGGGTGGGAGCGCCAAGGTTGATATCACGATTCGTCCACCCAAGACTAGGCGTCCCCCTGGCAGACCGAAAAAGAAGGTCCTTCGTGTAGAGAACTTCAAGCGCCCAAAGAGAGTTGTTCAATGTGGTCGGTGCCATATGTTAGGACATTCTCAAAAGAAATGCACCTTGCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

630

Amino Acids

71.77

Weight (kDa)

7.79

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 55 - 119 1.5e-23 MuDR family transposase
MULE PF10551 251 - 348 1.2e-14 MULE transposase domain
SWIM PF04434 501 - 531 2.1e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1563
Acc36I ACCTGC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 1845
AccI GTMKAC 1 cut(s) 742
AciI CCGC 2 cut(s) 394, 691
AcoI YGGCCR 1 cut(s) 1231
AcsI RAATTY 5 cut(s) 182, 1042, 1118, 1407, 1466
AcuI CTGAAG 1 cut(s) 639
AcyI GRCGYC 1 cut(s) 1765
AfaI GTAC 3 cut(s) 132, 793, 1389
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 1706, 1761
AhdI GACNNNNNGTC 2 cut(s) 1598, 1764
AjiI CACGTC 1 cut(s) 1162
AjnI CCWGG 4 cut(s) 334, 640, 786, 1771
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 8 cut(s) 150, 170, 449, 851, 910, 1258, 1291, 1686
AluI AGCT 8 cut(s) 150, 170, 449, 851, 910, 1258, 1291, 1686
Alw21I GWGCWC 3 cut(s) 293, 1293, 1526
Alw26I GTCTC 2 cut(s) 26, 1640
Ama87I CYCGRG 3 cut(s) 450, 1244, 1515
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 2 cut(s) 1231, 1272
ApaI GGGCCC 1 cut(s) 1276
ApeKI GCWGC 7 cut(s) 566, 806, 1258, 1434, 1568, 1571, 1574
ApoI RAATTY 5 cut(s) 182, 1042, 1118, 1407, 1466
Asp700I GAANNNNTTC 2 cut(s) 1044, 1082
AspLEI GCGC 4 cut(s) 571, 1564, 1727, 1818
AspS9I GGNCC 3 cut(s) 1272, 1273, 1792
AsuHPI GGTGA 3 cut(s) 383, 1087, 1261
AvaI CYCGRG 3 cut(s) 450, 1244, 1515
AvaII GGWCC 1 cut(s) 1792
BaeGI GKGCMC 1 cut(s) 1276
BalI TGGCCA 1 cut(s) 1233
BanI GGYRCC 1 cut(s) 1845
BanII GRGCYC 3 cut(s) 1276, 1293, 1701
Bbv12I GWGCWC 3 cut(s) 293, 1293, 1526
BbvI GCAGC 7 cut(s) 578, 793, 1245, 1421, 1555, 1558, 1561
BccI CCATC 2 cut(s) 1138, 1303
BceAI ACGGC 1 cut(s) 968
BciT130I CCWGG 4 cut(s) 336, 642, 788, 1773
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 26, 1640
BfaI CTAG 5 cut(s) 122, 435, 939, 1385, 1761
BfmI CTRYAG 2 cut(s) 1110, 1203
BfoI RGCGCY 3 cut(s) 572, 1728, 1819
BfuAI ACCTGC 1 cut(s) 209
BglII AGATCT 2 cut(s) 486, 1149
BisI GCNGC 8 cut(s) 567, 692, 807, 1259, 1435, 1569, 1572, 1575
BlpI GCTNAGC 1 cut(s) 1614
BlsI GCNGC 8 cut(s) 568, 693, 808, 1260, 1436, 1570, 1573, 1576
Bme1390I CCNGG 4 cut(s) 336, 642, 788, 1773
Bme18I GGWCC 1 cut(s) 1792
BmeRI GACNNNNNGTC 2 cut(s) 1598, 1764
BmeT110I CYCGRG 3 cut(s) 450, 1244, 1515
BmgBI CACGTC 1 cut(s) 1162
BmgT120I GGNCC 3 cut(s) 1272, 1273, 1792
BmiI GGNNCC 2 cut(s) 1274, 1847
BmrFI CCNGG 4 cut(s) 336, 642, 788, 1773
BmrI ACTGGG 1 cut(s) 1695
BmsI GCATC 7 cut(s) 425, 722, 808, 817, 818, 1343, 1417
BmuI ACTGGG 1 cut(s) 1695
BpmI CTGGAG 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 1614
Bsa29I ATCGAT 1 cut(s) 1379
BsaBI GATNNNNATC 1 cut(s) 1148
BsaHI GRCGYC 1 cut(s) 1765
BsaI GGTCTC 1 cut(s) 1640
BsaJI CCNNGG 8 cut(s) 27, 308, 787, 984, 1169, 1243, 1728, 1771
Bsc4I CCNNNNNNNGG 2 cut(s) 1706, 1761
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 3 cut(s) 673, 846, 1701
Bse3DI GCAATG 3 cut(s) 228, 240, 648
Bse8I GATNNNNATC 1 cut(s) 1148
BseBI CCWGG 4 cut(s) 336, 642, 788, 1773
BseCI ATCGAT 1 cut(s) 1379
BseDI CCNNGG 8 cut(s) 27, 308, 787, 984, 1169, 1243, 1728, 1771
BseGI GGATG 4 cut(s) 61, 226, 888, 1666
BseJI GATNNNNATC 1 cut(s) 1148
BseLI CCNNNNNNNGG 2 cut(s) 1706, 1761
BseMI GCAATG 3 cut(s) 228, 240, 648
BseMII CTCAG 2 cut(s) 1389, 1605
BseNI ACTGG 3 cut(s) 673, 846, 1701
BseRI GAGGAG 1 cut(s) 1179
BseSI GKGCMC 1 cut(s) 1276
BseXI GCAGC 7 cut(s) 578, 793, 1245, 1421, 1555, 1558, 1561
BsgI GTGCAG 2 cut(s) 28, 1560
BshFI GGCC 2 cut(s) 1233, 1274
BshNI GGYRCC 1 cut(s) 1845
BshVI ATCGAT 1 cut(s) 1379
BsiHKAI GWGCWC 3 cut(s) 293, 1293, 1526
BsiHKCI CYCGRG 3 cut(s) 450, 1244, 1515
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 2 cut(s) 1586, 1752
BslI CCNNNNNNNGG 2 cut(s) 1706, 1761
BsmAI GTCTC 2 cut(s) 26, 1640
BsmFI GGGAC 2 cut(s) 1586, 1752
BsmI GAATGC 2 cut(s) 1096, 1286
BsnI GGCC 2 cut(s) 1233, 1274
Bso31I GGTCTC 1 cut(s) 1640
BsoBI CYCGRG 3 cut(s) 450, 1244, 1515
Bsp120I GGGCCC 1 cut(s) 1272
Bsp1286I GDGCHC 5 cut(s) 293, 1276, 1293, 1526, 1701
Bsp143I GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
Bsp1720I GCTNAGC 1 cut(s) 1614
Bsp19I CCATGG 2 cut(s) 308, 1169
BspACI CCGC 2 cut(s) 394, 691
BspANI GGCC 2 cut(s) 1233, 1274
BspCNI CTCAG 2 cut(s) 1390, 1606
BspDI ATCGAT 1 cut(s) 1379
BspLI GGNNCC 2 cut(s) 1274, 1847
BspMAI CTGCAG 1 cut(s) 1114
BspMI ACCTGC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 1845
BspTNI GGTCTC 1 cut(s) 1640
BsrDI GCAATG 3 cut(s) 228, 240, 648
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 3 cut(s) 673, 846, 1701
BssAI RCCGGY 1 cut(s) 273
BssECI CCNNGG 8 cut(s) 27, 308, 787, 984, 1169, 1243, 1728, 1771
BssMI GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
BssNI GRCGYC 1 cut(s) 1765
BssT1I CCWWGG 3 cut(s) 308, 1169, 1728
Bst2UI CCWGG 4 cut(s) 336, 642, 788, 1773
Bst4CI ACNGT 3 cut(s) 617, 710, 1630
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 1765
BstC8I GCNNGC 4 cut(s) 414, 537, 1432, 1566
BstDEI CTNAG 3 cut(s) 146, 1398, 1614
BstDSI CCRYGG 4 cut(s) 27, 308, 984, 1169
BstF5I GGATG 4 cut(s) 61, 226, 888, 1666
BstH2I RGCGCY 3 cut(s) 572, 1728, 1819
BstHHI GCGC 4 cut(s) 571, 1564, 1727, 1818
BstKTI GATC 7 cut(s) 115, 247, 268, 489, 508, 1152, 1351
BstMAI GTCTC 2 cut(s) 26, 1640
BstMBI GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
BstMWI GCNNNNNNNGC 8 cut(s) 92, 373, 541, 827, 1100, 1109, 1568, 1574
BstNI CCWGG 4 cut(s) 336, 642, 788, 1773
BstNSI RCATGY 4 cut(s) 535, 737, 937, 1568
BstSCI CCNGG 4 cut(s) 334, 640, 786, 1771
BstSFI CTRYAG 2 cut(s) 1110, 1203
BstSLI GKGCMC 1 cut(s) 1276
BstV1I GCAGC 7 cut(s) 578, 793, 1245, 1421, 1555, 1558, 1561
BstX2I RGATCY 2 cut(s) 486, 1149
BstYI RGATCY 2 cut(s) 486, 1149
Bsu15I ATCGAT 1 cut(s) 1379
BsuRI GGCC 2 cut(s) 1233, 1274
BsuTUI ATCGAT 1 cut(s) 1379
BtgI CCRYGG 4 cut(s) 27, 308, 984, 1169
BtrI CACGTC 1 cut(s) 1162
BtsCI GGATG 4 cut(s) 61, 226, 888, 1666
BtsI GCAGTG 2 cut(s) 16, 1107
BtsIMutI CAGTG 6 cut(s) 16, 666, 839, 924, 1107, 1708
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 4 cut(s) 414, 537, 1432, 1566
CfoI GCGC 4 cut(s) 571, 1564, 1727, 1818
Cfr10I RCCGGY 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 1272, 1273, 1792
ClaI ATCGAT 1 cut(s) 1379
CseI GACGC 2 cut(s) 38, 1754
Csp6I GTAC 3 cut(s) 131, 792, 1388
CspCI CAANNNNNGTGG 2 cut(s) 1482, 1517
CviQI GTAC 3 cut(s) 131, 792, 1388
DdeI CTNAG 3 cut(s) 146, 1398, 1614
DpnI GATC 7 cut(s) 114, 246, 267, 488, 507, 1151, 1350
DpnII GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
DriI GACNNNNNGTC 2 cut(s) 1598, 1764
EaeI YGGCCR 1 cut(s) 1231
Eam1104I CTCTTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 2 cut(s) 1598, 1764
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 1291
Eco130I CCWWGG 3 cut(s) 308, 1169, 1728
Eco24I GRGCYC 3 cut(s) 1276, 1293, 1701
Eco31I GGTCTC 1 cut(s) 1640
Eco32I GATATC 3 cut(s) 499, 596, 1738
Eco47I GGWCC 1 cut(s) 1792
Eco47III AGCGCT 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 1291
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 3 cut(s) 450, 1244, 1515
EcoICRI GAGCTC 1 cut(s) 1291
EcoO109I RGGNCCY 2 cut(s) 1273, 1792
EcoRII CCWGG 4 cut(s) 334, 640, 786, 1771
EcoRV GATATC 3 cut(s) 499, 596, 1738
EcoT14I CCWWGG 3 cut(s) 308, 1169, 1728
EcoT22I ATGCAT 3 cut(s) 166, 240, 832
EcoT38I GRGCYC 3 cut(s) 1276, 1293, 1701
ErhI CCWWGG 3 cut(s) 308, 1169, 1728
FalI AAGNNNNNCTT 4 cut(s) 637, 669, 756, 788
FaqI GGGAC 2 cut(s) 1586, 1752
FauNDI CATATG 1 cut(s) 1851
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 8 cut(s) 567, 692, 807, 1259, 1435, 1569, 1572, 1575
FokI GGATG 4 cut(s) 68, 233, 895, 1653
FriOI GRGCYC 3 cut(s) 1276, 1293, 1701
Fsp4HI GCNGC 8 cut(s) 567, 692, 807, 1259, 1435, 1569, 1572, 1575
FspAI RTGCGCAY 1 cut(s) 1563
FspBI CTAG 5 cut(s) 122, 435, 939, 1385, 1761
FspI TGCGCA 1 cut(s) 1563
GlaI GCGC 4 cut(s) 570, 1563, 1726, 1817
GluI GCNGC 8 cut(s) 567, 692, 807, 1259, 1435, 1569, 1572, 1575
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 3 cut(s) 572, 1728, 1819
HaeIII GGCC 2 cut(s) 1233, 1274
HapII CCGG 1 cut(s) 274
HgaI GACGC 2 cut(s) 38, 1754
HhaI GCGC 4 cut(s) 571, 1564, 1727, 1818
Hin1I GRCGYC 1 cut(s) 1765
Hin6I GCGC 4 cut(s) 569, 1562, 1725, 1816
HinP1I GCGC 4 cut(s) 569, 1562, 1725, 1816
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HindIII AAGCTT 2 cut(s) 148, 908
HinfI GANTC 7 cut(s) 68, 140, 390, 1165, 1381, 1663, 1744
HpaII CCGG 1 cut(s) 274
HphI GGTGA 3 cut(s) 383, 1087, 1261
Hpy166II GTNNAC 7 cut(s) 16, 743, 922, 1374, 1553, 1592, 1751
Hpy188I TCNGA 3 cut(s) 265, 898, 958
Hpy188III TCNNGA 8 cut(s) 53, 188, 458, 584, 1049, 1087, 1676, 1741
Hpy8I GTNNAC 7 cut(s) 16, 743, 922, 1374, 1553, 1592, 1751
Hpy99I CGWCG 1 cut(s) 1536
HpyCH4III ACNGT 3 cut(s) 617, 710, 1630
HpyCH4IV ACGT 1 cut(s) 1161
HpyF10VI GCNNNNNNNGC 8 cut(s) 92, 373, 541, 827, 1100, 1109, 1568, 1574
HpyF3I CTNAG 3 cut(s) 146, 1398, 1614
HpySE526I ACGT 1 cut(s) 1161
Hsp92I GRCGYC 1 cut(s) 1765
HspAI GCGC 4 cut(s) 569, 1562, 1725, 1816
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
LguI GCTCTTC 1 cut(s) 202
LmnI GCTCC 5 cut(s) 296, 553, 1296, 1312, 1722
Lsp1109I GCAGC 7 cut(s) 578, 793, 1245, 1421, 1555, 1558, 1561
LweI GCATC 7 cut(s) 425, 722, 808, 817, 818, 1343, 1417
MaeI CTAG 5 cut(s) 122, 435, 939, 1385, 1761
MaeII ACGT 1 cut(s) 1161
MaeIII GTNAC 3 cut(s) 869, 1249, 1637
MalI GATC 7 cut(s) 114, 246, 267, 488, 507, 1151, 1350
MboI GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
MboII GAAGA 6 cut(s) 122, 219, 239, 596, 599, 1075
MfeI CAATTG 1 cut(s) 1419
MflI RGATCY 2 cut(s) 486, 1149
MhlI GDGCHC 5 cut(s) 293, 1276, 1293, 1526, 1701
MlsI TGGCCA 1 cut(s) 1233
MluNI TGGCCA 1 cut(s) 1233
MlyI GAGTC 1 cut(s) 399
MnlI CCTC 7 cut(s) 52, 1197, 1200, 1253, 1362, 1408, 1708
Mox20I TGGCCA 1 cut(s) 1233
Mph1103I ATGCAT 3 cut(s) 166, 240, 832
MroXI GAANNNNTTC 2 cut(s) 1044, 1082
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 4 cut(s) 42, 774, 1059, 1344
MslI CAYNNNNRTG 4 cut(s) 26, 233, 381, 1545
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 4 cut(s) 336, 642, 788, 1773
MunI CAATTG 1 cut(s) 1419
Mva1269I GAATGC 2 cut(s) 1096, 1286
MvaI CCWGG 4 cut(s) 336, 642, 788, 1773
MwoI GCNNNNNNNGC 8 cut(s) 92, 373, 541, 827, 1100, 1109, 1568, 1574
NcoI CCATGG 2 cut(s) 308, 1169
NdeI CATATG 1 cut(s) 1851
NdeII GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
NlaIV GGNNCC 2 cut(s) 1274, 1847
NmuCI GTSAC 2 cut(s) 869, 1249
NsbI TGCGCA 1 cut(s) 1563
NsiI ATGCAT 3 cut(s) 166, 240, 832
NspI RCATGY 4 cut(s) 535, 737, 937, 1568
OliI CACNNNNGTG 1 cut(s) 26
PaeI GCATGC 1 cut(s) 1568
PaeR7I CTCGAG 2 cut(s) 450, 1515
PciSI GCTCTTC 1 cut(s) 202
PctI GAATGC 2 cut(s) 1096, 1286
PdmI GAANNNNTTC 2 cut(s) 1044, 1082
PfeI GAWTC 6 cut(s) 68, 140, 1165, 1381, 1663, 1744
PfoI TCCNGGA 2 cut(s) 334, 640
PkrI GCNGC 8 cut(s) 568, 693, 808, 1260, 1436, 1570, 1573, 1576
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 1792
Psp124BI GAGCTC 1 cut(s) 1293
Psp5II RGGWCCY 1 cut(s) 1792
Psp6I CCWGG 4 cut(s) 334, 640, 786, 1771
PspGI CCWGG 4 cut(s) 334, 640, 786, 1771
PspN4I GGNNCC 2 cut(s) 1274, 1847
PspOMI GGGCCC 1 cut(s) 1272
PspPI GGNCC 3 cut(s) 1272, 1273, 1792
PspPPI RGGWCCY 1 cut(s) 1792
PspXI VCTCGAGB 2 cut(s) 450, 1515
PstI CTGCAG 1 cut(s) 1114
PsuI RGATCY 2 cut(s) 486, 1149
RsaI GTAC 3 cut(s) 132, 793, 1389
RsaNI GTAC 3 cut(s) 131, 792, 1388
RseI CAYNNNNRTG 4 cut(s) 26, 233, 381, 1545
SacI GAGCTC 1 cut(s) 1293
SapI GCTCTTC 1 cut(s) 202
SaqAI TTAA 4 cut(s) 42, 774, 1059, 1344
SatI GCNGC 8 cut(s) 567, 692, 807, 1259, 1435, 1569, 1572, 1575
Sau3AI GATC 7 cut(s) 112, 244, 265, 486, 505, 1149, 1348
Sau96I GGNCC 3 cut(s) 1272, 1273, 1792
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 4 cut(s) 336, 642, 788, 1773
SduI GDGCHC 5 cut(s) 293, 1276, 1293, 1526, 1701
SfaNI GCATC 7 cut(s) 425, 722, 808, 817, 818, 1343, 1417
SfcI CTRYAG 2 cut(s) 1110, 1203
Sfr274I CTCGAG 2 cut(s) 450, 1515
SinI GGWCC 1 cut(s) 1792
SlaI CTCGAG 2 cut(s) 450, 1515
SmiMI CAYNNNNRTG 4 cut(s) 26, 233, 381, 1545
SmlI CTYRAG 2 cut(s) 450, 1515
SmoI CTYRAG 2 cut(s) 450, 1515
SphI GCATGC 1 cut(s) 1568
SsiI CCGC 2 cut(s) 394, 691
SspMI CTAG 5 cut(s) 122, 435, 939, 1385, 1761
SstI GAGCTC 1 cut(s) 1293
StyD4I CCNGG 4 cut(s) 334, 640, 786, 1771
StyI CCWWGG 3 cut(s) 308, 1169, 1728
TaaI ACNGT 3 cut(s) 617, 710, 1630
TaiI ACGT 1 cut(s) 1164
TaqI TCGA 4 cut(s) 268, 451, 1379, 1516
TaqII GACCGA 1 cut(s) 1795
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 6 cut(s) 68, 140, 1165, 1381, 1663, 1744
Tru1I TTAA 4 cut(s) 42, 774, 1059, 1344
Tru9I TTAA 4 cut(s) 42, 774, 1059, 1344
TscAI CASTG 6 cut(s) 16, 673, 846, 931, 1114, 1708
TseFI GTSAC 2 cut(s) 869, 1249
TseI GCWGC 7 cut(s) 566, 806, 1258, 1434, 1568, 1571, 1574
Tsp45I GTSAC 2 cut(s) 869, 1249
TspDTI ATGAA 6 cut(s) 94, 392, 563, 1001, 1473, 1655
TspGWI ACGGA 2 cut(s) 491, 1504
TspRI CASTG 6 cut(s) 16, 673, 846, 931, 1114, 1708
VpaK11BI GGWCC 1 cut(s) 1792
XapI RAATTY 5 cut(s) 182, 1042, 1118, 1407, 1466
XceI RCATGY 4 cut(s) 535, 737, 937, 1568
XhoI CTCGAG 2 cut(s) 450, 1515
XmiI GTMKAC 1 cut(s) 742
XmnI GAANNNNTTC 2 cut(s) 1044, 1082
XspI CTAG 5 cut(s) 122, 435, 939, 1385, 1761
Zsp2I ATGCAT 3 cut(s) 166, 240, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.