pycom12g22380

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000251
Physical Location & Seq
Reverse (-)
23279822 .. 23281771
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22380.1

Sequence Viewer

Length: 1950 bp
ATGGCTCTTCCTACTCAGAACCATAGTATGGTCTTAGAGAACAATGAACTGGCCGTCTCAGAGGGCCAAGAACTTGATGAAAACATGGAACTGTCTATGGTTCAAAATAATGAAATGGGGATAGAATCTGCCCATGGTTTGAGTATCCAGGCATCTGATTTTGCACTCAGCCCCAGTCCTGTGATTCAGGCCCGTATGGCGCATGTAAATCCCAATTATGAATTGTCAGTGGGGCAAGAGTTCCCTGATGTCAAGAGCTGCCGGAGGGCGCTAAGGGATACTGCTATTGCTTTACACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCCAAATGTGCCACTGAGGGATGCCCATGGCGTATTCATGCTGCAAAGCTTCCTGGAGTTCCAACTTTCACAATCAGGACCATCATTGATAATCATACATGTGGAGGAATTTCTCATCTTGGCCATCAGCAAGCCTCGGTTCAATGGGTTGCAAATTCTGTGGAGCAACGGCTTAGAGAGAACCCTAATTACAAGCCAAAGGAGATACTGGAGGAGATTCACCGAGTTCATGGTATCACCTTATCATACAAGCAAGCTTGGCGAGGCAAGGAGCGTATCATGGCTGCAATGCGTGGTTCCTTTGAAGAAGGGTATCGCTTGCTTCCACAATATTGTGAACAGCTTAAACGGACAAACCCAGGGAGTATTGCATCCGTCTATGCATGCGTGAATGATAACAGCTTCCAACGCCTCTTCATATCATATCAGGCATCAATTTATGGGTTCCTGAATGCTTGTCGGCCCCTCCTTGGACTTGATAGGACATATTTGAAAAGTAAGTATCTGGGAACTTTGCTTCTTGCAACCGGTTTTGATGGTGATGGTGCTCTCTTTCCTCTGGCATTTGGGGTTGTTGATGAGGAGAATGATGATAACTGGATGTGGTTTCTTTCTGAACTTCATAATCTGCTTGAGATTAATACAGAAAATATGCCTAGGCTTACAATTTTGTCGGACAGGCAGAAGGGCATTGTAGATGGAGTTGAAGCAAACTTTCCCACTGCTTTTCATGGATTTTGCATGCGTCACTTGAGTGATAGCTTCCGCAAAGAGTTTAACAATACAATGCTTGTTAATCTTTTATGGGAGGCTGCTCAAGTTCTCACTGTTATAGAATTTGAAGCAAAAATTTTGGAGATTGAAGAGATATCACAAGATGCTGCATTTTGGATTAGGCGAATTCCACCTCGCTTGTGGGCTACTGCTTATTTTGAGGGAACAAGGTTTGGGCATTTGACAGCTAACATAGTTGAATCTCTAAATGCTTGGATATTGGAGGCGTCGGGTCTTCCAATCATTCAGATGATGGAATACGTCAGAAGGCAGCTGATGACTTGGTTCAATGAGCGTCGAGAGATCAGTATGCAGTGGACATCGATTCTTGTGCCCAGTGCAGAGAGGGATGTTTTGGAGGCTGAAGAGCGTGCACGGACTTATCAGGTCCTCCGTGCTAATGAGGCTGAATTTGAAGTTATATCCCATGAAGGGACGAACATAGTGGACATTCGAAACCGTTGCTGCCTTTGTCGGGGCTGGCAGCTTTATGGTTTGCCATGTGCACATGCCGTTGCAGCACTTAAATCGTGCAGGCAGCAAGTCAACCGATTTACGGAGAGCTGCTTCACAGTCACCACCTATCGGAAGACATACTCACAAACAATACATCCTATTCCAGACAAATCCCTCTGGAAGGAGTTATCTGAGGGAGATCCAAATGGGAGCATGGTTGCTGATGTTCTAATCAATCCACCTAAGTCCCTCCGCCCACCGGGACGACCAAGAAAGAAGCGTGTTCGAGCAGAAGACCGTGGCCGTGTGAAGCGAGTGGTGCATTGTAGTCGGTGCAATCAAACCGGCCACTTTAGGACGACTTGTGCGGCCCCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

650

Amino Acids

73.95

Weight (kDa)

6.84

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 74 - 138 1.4e-27 MuDR family transposase
MULE PF10551 270 - 365 1.8e-19 MULE transposase domain
SWIM PF04434 520 - 549 1.5e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AciI CCGC 3 cut(s) 1105, 1822, 1937
AclWI GGATC 1 cut(s) 1763
AcoI YGGCCR 4 cut(s) 51, 460, 1870, 1915
AcsI RAATTY 6 cut(s) 447, 493, 1175, 1188, 1239, 1523
AcuI CTGAAG 1 cut(s) 1497
AcyI GRCGYC 1 cut(s) 1340
AfiI CCNNNNNNNGG 8 cut(s) 28, 809, 1545, 1588, 1669, 1698, 1750, 1828
AflIII ACRYGT 1 cut(s) 437
AgeI ACCGGT 1 cut(s) 866
AjnI CCWGG 3 cut(s) 147, 391, 697
AleI CACNNNNGTG 1 cut(s) 1092
Alw21I GWGCWC 3 cut(s) 889, 1489, 1621
Alw26I GTCTC 1 cut(s) 61
Alw44I GTGCAC 2 cut(s) 1485, 1617
AlwI GGATC 1 cut(s) 1763
AoxI GGCC 8 cut(s) 51, 64, 189, 460, 800, 1870, 1915, 1938
ApaLI GTGCAC 2 cut(s) 1485, 1617
ApoI RAATTY 6 cut(s) 447, 493, 1175, 1188, 1239, 1523
AseI ATTAAT 1 cut(s) 978
AsiGI ACCGGT 1 cut(s) 866
AspA2I CCTAGG 1 cut(s) 995
AspLEI GCGC 2 cut(s) 202, 271
AspS9I GGNCC 6 cut(s) 64, 190, 417, 801, 1501, 1939
AsuC2I CCSGG 1 cut(s) 1830
AsuHPI GGTGA 4 cut(s) 551, 568, 890, 1681
AsuII TTCGAA 1 cut(s) 1567
AvaII GGWCC 2 cut(s) 417, 1501
AvrII CCTAGG 1 cut(s) 995
BaeGI GKGCMC 3 cut(s) 1449, 1489, 1621
BalI TGGCCA 1 cut(s) 462
BbsI GAAGAC 3 cut(s) 1340, 1709, 1869
Bbv12I GWGCWC 3 cut(s) 889, 1489, 1621
BccI CCATC 6 cut(s) 428, 471, 869, 875, 1031, 1360
BceAI ACGGC 4 cut(s) 38, 524, 1610, 1857
BcgI CGANNNNNNTGC 8 cut(s) 1426, 1460, 1557, 1591, 1623, 1657, 1880, 1914
BciT130I CCWGG 3 cut(s) 149, 393, 699
BciVI GTATCC 2 cut(s) 155, 271
BcnI CCSGG 1 cut(s) 1830
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 996, 1948
BfoI RGCGCY 1 cut(s) 272
BfuI GTATCC 2 cut(s) 155, 271
BglI GCCNNNNNGGC 1 cut(s) 197
BlnI CCTAGG 1 cut(s) 995
Bme1390I CCNGG 4 cut(s) 149, 393, 699, 1830
Bme18I GGWCC 2 cut(s) 417, 1501
BmgT120I GGNCC 6 cut(s) 64, 190, 417, 801, 1501, 1939
BmiI GGNNCC 4 cut(s) 637, 785, 803, 1941
BmrFI CCNGG 4 cut(s) 149, 393, 699, 1830
BmrI ACTGGG 2 cut(s) 168, 1443
BmsI GCATC 5 cut(s) 161, 350, 719, 779, 1207
BmuI ACTGGG 2 cut(s) 168, 1443
BpiI GAAGAC 3 cut(s) 1340, 1709, 1869
BpmI CTGGAG 2 cut(s) 414, 569
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 1567
BpuEI CTTGAG 3 cut(s) 992, 1111, 1140
BpuMI CCSGG 1 cut(s) 1830
Bsa29I ATCGAT 1 cut(s) 1436
BsaHI GRCGYC 1 cut(s) 1340
BsaJI CCNNGG 8 cut(s) 133, 365, 474, 697, 698, 808, 995, 1867
BsaWI WCCGGW 1 cut(s) 866
Bsc4I CCNNNNNNNGG 8 cut(s) 28, 809, 1545, 1588, 1669, 1698, 1750, 1828
Bse118I RCCGGY 2 cut(s) 866, 1913
Bse1I ACTGG 5 cut(s) 54, 174, 552, 941, 1449
Bse3DI GCAATG 1 cut(s) 633
BseBI CCWGG 3 cut(s) 149, 393, 699
BseCI ATCGAT 1 cut(s) 1436
BseDI CCNNGG 8 cut(s) 133, 365, 474, 697, 698, 808, 995, 1867
BseGI GGATG 5 cut(s) 365, 710, 945, 1468, 1723
BseLI CCNNNNNNNGG 8 cut(s) 28, 809, 1545, 1588, 1669, 1698, 1750, 1828
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 5 cut(s) 29, 72, 181, 345, 1752
BseNI ACTGG 5 cut(s) 54, 174, 552, 941, 1449
BseRI GAGGAG 2 cut(s) 566, 935
BseSI GKGCMC 3 cut(s) 1449, 1489, 1621
BsgI GTGCAG 2 cut(s) 1473, 1666
BshFI GGCC 8 cut(s) 53, 66, 191, 462, 802, 1872, 1917, 1940
BshTI ACCGGT 1 cut(s) 866
BshVI ATCGAT 1 cut(s) 1436
BsiHKAI GWGCWC 3 cut(s) 889, 1489, 1621
BsiSI CCGG 4 cut(s) 262, 867, 1829, 1914
BslFI GGGAC 3 cut(s) 1561, 1801, 1845
BslI CCNNNNNNNGG 8 cut(s) 28, 809, 1545, 1588, 1669, 1698, 1750, 1828
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 3 cut(s) 1561, 1801, 1845
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 8 cut(s) 53, 66, 191, 462, 802, 1872, 1917, 1940
Bsp119I TTCGAA 1 cut(s) 1567
Bsp1286I GDGCHC 4 cut(s) 889, 1449, 1489, 1621
Bsp143I GATC 2 cut(s) 1416, 1768
Bsp19I CCATGG 2 cut(s) 133, 365
BspACI CCGC 3 cut(s) 1105, 1822, 1937
BspANI GGCC 8 cut(s) 53, 66, 191, 462, 802, 1872, 1917, 1940
BspCNI CTCAG 5 cut(s) 28, 71, 180, 346, 1753
BspDI ATCGAT 1 cut(s) 1436
BspLI GGNNCC 4 cut(s) 637, 785, 803, 1941
BspPI GGATC 1 cut(s) 1763
BspQI GCTCTTC 2 cut(s) 12, 1473
BspT104I TTCGAA 1 cut(s) 1567
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 2 cut(s) 866, 1913
BsrI ACTGG 5 cut(s) 54, 174, 552, 941, 1449
BssAI RCCGGY 2 cut(s) 866, 1913
BssECI CCNNGG 8 cut(s) 133, 365, 474, 697, 698, 808, 995, 1867
BssMI GATC 2 cut(s) 1416, 1768
BssNI GRCGYC 1 cut(s) 1340
BssT1I CCWWGG 4 cut(s) 133, 365, 808, 995
Bst2UI CCWGG 3 cut(s) 149, 393, 699
Bst4CI ACNGT 5 cut(s) 93, 1168, 1574, 1687, 1868
Bst6I CTCTTC 4 cut(s) 12, 758, 1197, 1473
BstACI GRCGYC 1 cut(s) 1340
BstBI TTCGAA 1 cut(s) 1567
BstC8I GCNNGC 8 cut(s) 471, 594, 659, 724, 1082, 1485, 1595, 1649
BstDEI CTNAG 9 cut(s) 15, 34, 58, 167, 272, 354, 512, 1761, 1812
BstDSI CCRYGG 3 cut(s) 133, 365, 1867
BstENI CCTNNNNNAGG 1 cut(s) 1748
BstF5I GGATG 5 cut(s) 365, 710, 945, 1468, 1723
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 202, 271
BstKTI GATC 2 cut(s) 1419, 1771
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 1416, 1768
BstMWI GCNNNNNNNGC 7 cut(s) 197, 347, 598, 747, 1517, 1631, 1888
BstNI CCWGG 3 cut(s) 149, 393, 699
BstNSI RCATGY 5 cut(s) 206, 441, 726, 1084, 1625
BstSCI CCNGG 4 cut(s) 147, 391, 697, 1828
BstSLI GKGCMC 3 cut(s) 1449, 1489, 1621
BstV2I GAAGAC 3 cut(s) 1340, 1709, 1869
BstX2I RGATCY 1 cut(s) 1768
BstYI RGATCY 1 cut(s) 1768
Bsu15I ATCGAT 1 cut(s) 1436
BsuI GTATCC 2 cut(s) 155, 271
BsuRI GGCC 8 cut(s) 53, 66, 191, 462, 802, 1872, 1917, 1940
BsuTUI ATCGAT 1 cut(s) 1436
BtgI CCRYGG 3 cut(s) 133, 365, 1867
BtsCI GGATG 5 cut(s) 365, 710, 945, 1468, 1723
BtsI GCAGTG 3 cut(s) 336, 1059, 1433
BtsIMutI CAGTG 7 cut(s) 234, 336, 351, 1059, 1164, 1433, 1456
Cac8I GCNNGC 8 cut(s) 471, 594, 659, 724, 1082, 1485, 1595, 1649
CfoI GCGC 2 cut(s) 202, 271
Cfr10I RCCGGY 2 cut(s) 866, 1913
Cfr13I GGNCC 6 cut(s) 64, 190, 417, 801, 1501, 1939
ClaI ATCGAT 1 cut(s) 1436
CseI GACGC 3 cut(s) 1073, 1329, 1397
CspAI ACCGGT 1 cut(s) 866
CspCI CAANNNNNGTGG 4 cut(s) 480, 515, 1233, 1268
DdeI CTNAG 9 cut(s) 15, 34, 58, 167, 272, 354, 512, 1761, 1812
DpnI GATC 2 cut(s) 1418, 1770
DpnII GATC 2 cut(s) 1416, 1768
EaeI YGGCCR 4 cut(s) 51, 460, 1870, 1915
Eam1104I CTCTTC 4 cut(s) 12, 758, 1197, 1473
EarI CTCTTC 4 cut(s) 12, 758, 1197, 1473
EciI GGCGGA 1 cut(s) 1811
Eco130I CCWWGG 4 cut(s) 133, 365, 808, 995
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 2 cut(s) 417, 1501
Eco57I CTGAAG 1 cut(s) 1497
EcoNI CCTNNNNNAGG 1 cut(s) 1748
EcoO109I RGGNCCY 1 cut(s) 1501
EcoRI GAATTC 1 cut(s) 1239
EcoRII CCWGG 3 cut(s) 147, 391, 697
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 4 cut(s) 133, 365, 808, 995
EcoT22I ATGCAT 1 cut(s) 724
ErhI CCWWGG 4 cut(s) 133, 365, 808, 995
Esp3I CGTCTC 1 cut(s) 61
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 3 cut(s) 1561, 1801, 1845
FokI GGATG 5 cut(s) 372, 697, 952, 1475, 1710
FspBI CTAG 2 cut(s) 996, 1948
GlaI GCGC 2 cut(s) 201, 270
GsuI CTGGAG 2 cut(s) 414, 569
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 8 cut(s) 53, 66, 191, 462, 802, 1872, 1917, 1940
HapII CCGG 4 cut(s) 262, 867, 1829, 1914
HgaI GACGC 3 cut(s) 1073, 1329, 1397
HhaI GCGC 2 cut(s) 202, 271
Hin1I GRCGYC 1 cut(s) 1340
Hin6I GCGC 2 cut(s) 200, 269
HinP1I GCGC 2 cut(s) 200, 269
HincII GTYRAC 1 cut(s) 1660
HindII GTYRAC 1 cut(s) 1660
HindIII AAGCTT 2 cut(s) 386, 594
HinfI GANTC 6 cut(s) 125, 184, 328, 556, 1313, 1438
HpaII CCGG 4 cut(s) 262, 867, 1829, 1914
HphI GGTGA 4 cut(s) 551, 568, 890, 1681
Hpy166II GTNNAC 6 cut(s) 677, 1431, 1487, 1561, 1619, 1660
Hpy188III TCNNGA 6 cut(s) 253, 415, 787, 1412, 1733, 1747
Hpy8I GTNNAC 6 cut(s) 677, 1431, 1487, 1561, 1619, 1660
Hpy99I CGWCG 2 cut(s) 1345, 1413
HpyAV CCTTC 5 cut(s) 641, 1018, 1374, 1538, 1744
HpyCH4III ACNGT 5 cut(s) 93, 1168, 1574, 1687, 1868
HpyCH4IV ACGT 1 cut(s) 1374
HpyF10VI GCNNNNNNNGC 7 cut(s) 197, 347, 598, 747, 1517, 1631, 1888
HpyF3I CTNAG 9 cut(s) 15, 34, 58, 167, 272, 354, 512, 1761, 1812
HpySE526I ACGT 1 cut(s) 1374
Hsp92I GRCGYC 1 cut(s) 1340
HspAI GCGC 2 cut(s) 200, 269
Kzo9I GATC 2 cut(s) 1416, 1768
LguI GCTCTTC 2 cut(s) 12, 1473
LmnI GCTCC 3 cut(s) 502, 610, 1779
LweI GCATC 5 cut(s) 161, 350, 719, 779, 1207
MaeI CTAG 2 cut(s) 996, 1948
MaeII ACGT 1 cut(s) 1374
MaeIII GTNAC 2 cut(s) 1085, 1687
MalI GATC 2 cut(s) 1418, 1770
MboI GATC 2 cut(s) 1416, 1768
MboII GAAGA 7 cut(s) 656, 745, 1214, 1340, 1490, 1714, 1874
MflI RGATCY 1 cut(s) 1768
MhlI GDGCHC 4 cut(s) 889, 1449, 1489, 1621
MlsI TGGCCA 1 cut(s) 462
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 3 cut(s) 425, 769, 993
Mox20I TGGCCA 1 cut(s) 462
Mph1103I ATGCAT 1 cut(s) 724
MscI TGGCCA 1 cut(s) 462
MseI TTAA 6 cut(s) 315, 684, 978, 1116, 1134, 1638
MslI CAYNNNNRTG 3 cut(s) 438, 1092, 1361
Msp20I TGGCCA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 1387
MspI CCGG 4 cut(s) 262, 867, 1829, 1914
MspR9I CCNGG 4 cut(s) 149, 393, 699, 1830
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 3 cut(s) 149, 393, 699
MwoI GCNNNNNNNGC 7 cut(s) 197, 347, 598, 747, 1517, 1631, 1888
NciI CCSGG 1 cut(s) 1830
NcoI CCATGG 2 cut(s) 133, 365
NdeII GATC 2 cut(s) 1416, 1768
NlaIV GGNNCC 4 cut(s) 637, 785, 803, 1941
NmuCI GTSAC 2 cut(s) 1085, 1687
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 5 cut(s) 206, 441, 726, 1084, 1625
NspV TTCGAA 1 cut(s) 1567
OliI CACNNNNGTG 1 cut(s) 1092
PaeI GCATGC 2 cut(s) 726, 1084
PasI CCCWGGG 1 cut(s) 698
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 2 cut(s) 12, 1473
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 5 cut(s) 125, 184, 556, 1313, 1438
PflMI CCANNNNNTGG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 391
PinAI ACCGGT 1 cut(s) 866
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PpuMI RGGWCCY 1 cut(s) 1501
PscI ACATGT 1 cut(s) 437
PshBI ATTAAT 1 cut(s) 978
Psp5II RGGWCCY 1 cut(s) 1501
Psp6I CCWGG 3 cut(s) 147, 391, 697
PspGI CCWGG 3 cut(s) 147, 391, 697
PspN4I GGNNCC 4 cut(s) 637, 785, 803, 1941
PspPI GGNCC 6 cut(s) 64, 190, 417, 801, 1501, 1939
PspPPI RGGWCCY 1 cut(s) 1501
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PsuI RGATCY 1 cut(s) 1768
PvuII CAGCTG 1 cut(s) 1387
RseI CAYNNNNRTG 3 cut(s) 438, 1092, 1361
SapI GCTCTTC 2 cut(s) 12, 1473
SaqAI TTAA 6 cut(s) 315, 684, 978, 1116, 1134, 1638
Sau3AI GATC 2 cut(s) 1416, 1768
Sau96I GGNCC 6 cut(s) 64, 190, 417, 801, 1501, 1939
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 4 cut(s) 149, 393, 699, 1830
SduI GDGCHC 4 cut(s) 889, 1449, 1489, 1621
SfaNI GCATC 5 cut(s) 161, 350, 719, 779, 1207
SfuI TTCGAA 1 cut(s) 1567
SinI GGWCC 2 cut(s) 417, 1501
SmiMI CAYNNNNRTG 3 cut(s) 438, 1092, 1361
SmlI CTYRAG 3 cut(s) 971, 1090, 1155
SmoI CTYRAG 3 cut(s) 971, 1090, 1155
SphI GCATGC 2 cut(s) 726, 1084
SsiI CCGC 3 cut(s) 1105, 1822, 1937
SspI AATATT 1 cut(s) 671
SspMI CTAG 2 cut(s) 996, 1948
StyD4I CCNGG 4 cut(s) 147, 391, 697, 1828
StyI CCWWGG 4 cut(s) 133, 365, 808, 995
TaaI ACNGT 5 cut(s) 93, 1168, 1574, 1687, 1868
TaiI ACGT 1 cut(s) 1377
TaqI TCGA 4 cut(s) 1411, 1436, 1567, 1855
TauI GCSGC 1 cut(s) 1940
TfiI GAWTC 5 cut(s) 125, 184, 556, 1313, 1438
Tru1I TTAA 6 cut(s) 315, 684, 978, 1116, 1134, 1638
Tru9I TTAA 6 cut(s) 315, 684, 978, 1116, 1134, 1638
TscAI CASTG 7 cut(s) 234, 343, 358, 1066, 1171, 1433, 1456
TseFI GTSAC 2 cut(s) 1085, 1687
Tsp45I GTSAC 2 cut(s) 1085, 1687
TspGWI ACGGA 5 cut(s) 703, 703, 1496, 1504, 1685
TspRI CASTG 7 cut(s) 234, 343, 358, 1066, 1171, 1433, 1456
Van91I CCANNNNNTGG 1 cut(s) 28
VneI GTGCAC 2 cut(s) 1485, 1617
VpaK11BI GGWCC 2 cut(s) 417, 1501
VspI ATTAAT 1 cut(s) 978
XagI CCTNNNNNAGG 1 cut(s) 1748
XapI RAATTY 6 cut(s) 447, 493, 1175, 1188, 1239, 1523
XceI RCATGY 5 cut(s) 206, 441, 726, 1084, 1625
XcmI CCANNNNNNNNNTGG 1 cut(s) 1251
XmaJI CCTAGG 1 cut(s) 995
XspI CTAG 2 cut(s) 996, 1948
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.