Rorug02G0614500

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
73216290 .. 73220993
4704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614500.1

Sequence Viewer

Length: 618 bp
ATGGAAACGTCTGAATATATACAGGATGGCATTGATTGGACAACCAGGATTGCCTTGGTCTTTTTGAAGAGACCGGTGGGAGGGATTACTCAGTCCCTCTTAGATGAAAGAGTCCACTTTCTCCAAATGGTAGCGATTTTACCTTCGCCAGCGAAGCTTAGCGTAGCATCAGACGCGAGTAGGTTGCTGGGGTGGGAGGGAATAGAAGATTGTGGTGGACTTCAGGGGGAGGGTTTCCGGAGAGGTGGTAGAGGTGTGGATGTAGGAATCAAACTTCAAATATGGACCGGCCTTGCTCGCCTCTACGACAAAGGGGTCTCAACAACACTAGCATGGGCATGCAGACTTACTGGAAGGATATGCACTGAGCATCAAGGGAAGAGCATTAGAAAGGGCAGAGATACTGGAGCTCCAAGGGGAAGGACACTACAATCAGAGACCAAGTTTCAGTGCTATGAACCTGCAACCATGAAATACTTTGGATATTACCATGCATTGACACCTGATGAGGTCAAGGAGCGGGTAGCACTAGCAAGGAAGGCACAAAAAACATCGGCAAAGATCAAGCAAAGACGCATGTCTCAAGTATATAATAGAACACCCATACCTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

205

Amino Acids

23.0

Weight (kDa)

9.75

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 469
AccBSI CCGCTC 1 cut(s) 520
AccII CGCG 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 67, 278
AjnI CCWGG 1 cut(s) 44
AluBI AGCT 2 cut(s) 157, 410
AluI AGCT 2 cut(s) 157, 410
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 4 cut(s) 64, 322, 431, 585
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 1 cut(s) 289
AsiGI ACCGGT 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 285
AvaII GGWCC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 1 cut(s) 412
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 46
BcoDI GTCTC 4 cut(s) 64, 322, 431, 585
BfaI CTAG 2 cut(s) 329, 530
BfuAI ACCTGC 1 cut(s) 469
BlpI GCTNAGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 176, 379
BoxI GACNNNNGTC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 567
BsaI GGTCTC 3 cut(s) 64, 322, 431
BsaJI CCNNGG 2 cut(s) 54, 413
BsaWI WCCGGW 2 cut(s) 73, 237
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 394, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 2 cut(s) 73, 287
Bse1I ACTGG 2 cut(s) 355, 409
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 54, 413
BseGI GGATG 2 cut(s) 31, 265
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 104, 357
BseNI ACTGG 2 cut(s) 355, 409
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 291
BshTI ACCGGT 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 74, 238, 288
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 4 cut(s) 64, 322, 431, 585
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 291
Bso31I GGTCTC 3 cut(s) 64, 322, 431
Bsp1286I GDGCHC 1 cut(s) 412
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 561
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 1 cut(s) 520
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 2 cut(s) 103, 358
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 374
BspTNI GGTCTC 3 cut(s) 64, 322, 431
BsrBI CCGCTC 1 cut(s) 520
BsrFI RCCGGY 2 cut(s) 73, 287
BsrI ACTGG 2 cut(s) 355, 409
BssAI RCCGGY 2 cut(s) 73, 287
BssECI CCNNGG 2 cut(s) 54, 413
BssMI GATC 1 cut(s) 561
BssT1I CCWWGG 2 cut(s) 54, 413
Bst2UI CCWGG 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 62, 374
BstC8I GCNNGC 3 cut(s) 150, 298, 340
BstDEI CTNAG 4 cut(s) 90, 100, 158, 366
BstF5I GGATG 2 cut(s) 31, 265
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 1 cut(s) 564
BstMAI GTCTC 4 cut(s) 64, 322, 431, 585
BstMBI GATC 1 cut(s) 561
BstMWI GCNNNNNNNGC 4 cut(s) 154, 173, 297, 539
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 2 cut(s) 342, 580
BstPAI GACNNNNGTC 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 44
BstUI CGCG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 2 cut(s) 31, 265
BtsIMutI CAGTG 2 cut(s) 363, 455
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 3 cut(s) 150, 298, 340
Cfr10I RCCGGY 2 cut(s) 73, 287
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 2 cut(s) 182, 582
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 5 cut(s) 333, 339, 469, 491, 577
CviJI RGCY 3 cut(s) 157, 291, 410
CviKI_1 RGCY 3 cut(s) 157, 291, 410
DdeI CTNAG 4 cut(s) 90, 100, 158, 366
DpnI GATC 1 cut(s) 563
DpnII GATC 1 cut(s) 561
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 62, 374
EarI CTCTTC 2 cut(s) 62, 374
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 54, 413
Eco24I GRGCYC 1 cut(s) 412
Eco31I GGTCTC 3 cut(s) 64, 322, 431
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 54, 413
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 2 cut(s) 54, 413
FaeI CATG 5 cut(s) 336, 342, 472, 494, 580
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 332, 338, 468, 490, 576
FauI CCCGC 1 cut(s) 513
FokI GGATG 2 cut(s) 38, 272
FriOI GRGCYC 1 cut(s) 412
FspBI CTAG 2 cut(s) 329, 530
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 74, 238, 288
HgaI GACGC 2 cut(s) 182, 582
Hin1II CATG 5 cut(s) 336, 342, 472, 494, 580
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 111, 267
HpaII CCGG 3 cut(s) 74, 238, 288
Hpy166II GTNNAC 2 cut(s) 115, 218
Hpy188I TCNGA 3 cut(s) 13, 172, 436
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 2 cut(s) 115, 218
HpyAV CCTTC 4 cut(s) 153, 348, 414, 532
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 342, 363, 464, 494
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 173, 297, 539
HpyF3I CTNAG 4 cut(s) 90, 100, 158, 366
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 5 cut(s) 336, 342, 472, 494, 580
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 561
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 3 cut(s) 407, 415, 517
LweI GCATC 2 cut(s) 176, 379
MaeI CTAG 2 cut(s) 329, 530
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 563
MbiI CCGCTC 1 cut(s) 520
MboI GATC 1 cut(s) 561
MboII GAAGA 3 cut(s) 79, 218, 391
MhlI GDGCHC 1 cut(s) 412
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 8 cut(s) 74, 107, 190, 223, 236, 245, 311, 502
Mph1103I ATGCAT 1 cut(s) 496
MroI TCCGGA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 331, 337
MspI CCGG 3 cut(s) 74, 238, 288
MspR9I CCNGG 1 cut(s) 46
MvaI CCWGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 154, 173, 297, 539
NdeII GATC 1 cut(s) 561
NlaIII CATG 5 cut(s) 336, 342, 472, 494, 580
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 2 cut(s) 342, 580
PaeI GCATGC 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 73
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshAI GACNNNNGTC 1 cut(s) 577
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 44
PspPI GGNCC 1 cut(s) 285
RseI CAYNNNNRTG 2 cut(s) 331, 337
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 374
Sau3AI GATC 1 cut(s) 561
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 176, 379
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 331, 337
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SphI GCATGC 1 cut(s) 342
SsiI CCGC 1 cut(s) 520
SspMI CTAG 2 cut(s) 329, 530
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 54, 413
TaiI ACGT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 267
TscAI CASTG 2 cut(s) 370, 455
TspDTI ATGAA 3 cut(s) 120, 471, 485
TspRI CASTG 2 cut(s) 370, 455
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 2 cut(s) 342, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 2 cut(s) 329, 530
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.