Rorug02G0614600

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
73222942 .. 73225091
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614600.1

Sequence Viewer

Length: 651 bp
ATGGATTGGGAATACGATACAGTGGGGCTGAATGCATTGCGTGATGTTGACAATCATGATACCCCTATCGCTGATAGGCTTATATTGGAGTCCTTTGAAACTGAGATGTTCAAGTTTGTTCCCGCAACTAGATCAGCAATAGAGAATTTGCACAAAATGAGACTTGATGGTTTGGAAGAGGCTACTATCAAACAGAACCCAACATGTAGTATATGTAAGGATGAATTTGCCAAAGGCAGGGTTGATCAACTGATTATCCCATTACCTTGCGCACACCATTATCATGTACATTGCGTTGTTCAATGGCTGGAGCTGAGTCACATGTGCCCTTTGCGTCGATACCCCCTGCCAACTTTGGAAGAGGGTGGCGAGCCTTCAAATTTTTTACCCAGTTTGGAAGAGGGTGAGCCATCAAATTCTTTGCCGAGTGTTGAAGAGGGTGAGGCGGAAGTTAAGGGTCGTGTGAGTGCAAAAGAGGATTGCGTTGATGAAGTTGAGGAGCAAAGTAGAGGCGAGAGTACTATGCCGGAGCGGTGTAGGTACTTGGCCGAAGAAGCTCCTGACCCTCCTCTGAGGTGGCTTTGGTTTCTGGGTTTGCTGTCAGATTTTGCTGTTAATGTAACTAATGAGGCCCTCAGCATGTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

216

Amino Acids

24.47

Weight (kDa)

4.57

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 68 - 111 1.9e-09 Ring finger domain
zf-RING_11 PF17123 69 - 99 6.8e-06 RING-like zinc finger
AtTam38 PF25114 162 - 199 1.1e-10 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 532
AciI CCGC 3 cut(s) 123, 446, 532
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 4 cut(s) 145, 224, 379, 415
AfaI GTAC 3 cut(s) 288, 520, 542
AfiI CCNNNNNNNGG 1 cut(s) 237
AflIII ACRYGT 2 cut(s) 203, 321
AgsI TTSAA 5 cut(s) 98, 112, 302, 378, 434
AluBI AGCT 2 cut(s) 313, 557
AluI AGCT 2 cut(s) 313, 557
Alw26I GTCTC 1 cut(s) 154
AoxI GGCC 2 cut(s) 546, 630
ApoI RAATTY 4 cut(s) 145, 224, 379, 415
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 631
AsuHPI GGTGA 2 cut(s) 416, 452
BaeGI GKGCMC 1 cut(s) 329
BbvCI CCTCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 161, 418
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 129
BmcAI AGTACT 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 631
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 635
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 2 cut(s) 35, 289
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMI GCAATG 2 cut(s) 35, 289
BseMII CTCAG 4 cut(s) 93, 305, 563, 649
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 2 cut(s) 512, 558
BseSI GKGCMC 1 cut(s) 329
BshFI GGCC 2 cut(s) 548, 632
BsiSI CCGG 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 2 cut(s) 548, 632
Bsp1286I GDGCHC 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 131, 244
BspACI CCGC 3 cut(s) 123, 446, 532
BspANI GGCC 2 cut(s) 548, 632
BspCNI CTCAG 4 cut(s) 94, 306, 564, 648
BspHI TCATGA 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 2 cut(s) 35, 289
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 1 cut(s) 390
BssMI GATC 2 cut(s) 131, 244
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 4 cut(s) 171, 354, 393, 429
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 371
BstDEI CTNAG 4 cut(s) 102, 314, 572, 635
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 2 cut(s) 134, 247
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 131, 244
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNSI RCATGY 3 cut(s) 207, 325, 643
BstSLI GKGCMC 1 cut(s) 329
BsuRI GGCC 2 cut(s) 548, 632
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 371
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 323
Csp6I GTAC 3 cut(s) 287, 519, 541
CviAII CATG 5 cut(s) 56, 204, 284, 322, 640
CviQI GTAC 3 cut(s) 287, 519, 541
DdeI CTNAG 4 cut(s) 102, 314, 572, 635
DpnI GATC 2 cut(s) 133, 246
DpnII GATC 2 cut(s) 131, 244
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 4 cut(s) 171, 354, 393, 429
EarI CTCTTC 4 cut(s) 171, 354, 393, 429
EciI GGCGGA 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 37
FaeI CATG 5 cut(s) 59, 207, 287, 325, 643
FaiI YATR 9 cut(s) 57, 83, 205, 212, 214, 285, 323, 524, 641
FatI CATG 5 cut(s) 55, 203, 283, 321, 639
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 244
FokI GGATG 1 cut(s) 233
FspBI CTAG 1 cut(s) 129
FspI TGCGCA 1 cut(s) 271
GlaI GCGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 548, 632
HapII CCGG 1 cut(s) 527
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 272
Hin1II CATG 5 cut(s) 59, 207, 287, 325, 643
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 89, 316
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 416, 452
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 573, 604
Hpy188III TCNNGA 2 cut(s) 56, 560
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 35, 151, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 4 cut(s) 102, 314, 572, 635
Hsp92II CATG 5 cut(s) 59, 207, 287, 325, 643
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 131, 244
LmnI GCTCC 4 cut(s) 310, 499, 529, 562
LpnPI CCDG 7 cut(s) 223, 293, 359, 403, 540, 573, 575
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 317, 619
MalI GATC 2 cut(s) 133, 246
MbiI CCGCTC 1 cut(s) 532
MboI GATC 2 cut(s) 131, 244
MboII GAAGA 5 cut(s) 188, 371, 410, 446, 563
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 4 cut(s) 145, 224, 379, 415
MlyI GAGTC 2 cut(s) 98, 325
Mph1103I ATGCAT 1 cut(s) 37
MseI TTAA 3 cut(s) 453, 615, 649
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 554
NdeII GATC 2 cut(s) 131, 244
NlaIII CATG 5 cut(s) 59, 207, 287, 325, 643
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 317
NsbI TGCGCA 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 3 cut(s) 207, 325, 643
PagI TCATGA 1 cut(s) 55
PciI ACATGT 2 cut(s) 203, 321
PctI GAATGC 1 cut(s) 37
PleI GAGTC 2 cut(s) 97, 324
PpsI GAGTC 2 cut(s) 97, 324
PscI ACATGT 2 cut(s) 203, 321
PspPI GGNCC 1 cut(s) 631
RsaI GTAC 3 cut(s) 288, 520, 542
RsaNI GTAC 3 cut(s) 287, 519, 541
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 3 cut(s) 453, 615, 649
Sau3AI GATC 2 cut(s) 131, 244
Sau96I GGNCC 1 cut(s) 631
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 2 cut(s) 98, 325
SduI GDGCHC 1 cut(s) 329
SetI ASST 5 cut(s) 268, 315, 542, 559, 578
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 4 cut(s) 145, 224, 379, 415
SsiI CCGC 3 cut(s) 123, 446, 532
SspMI CTAG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 337, 644
TasI AATT 4 cut(s) 145, 224, 379, 415
TatI WGTACW 2 cut(s) 286, 518
Tru1I TTAA 3 cut(s) 453, 615, 649
Tru9I TTAA 3 cut(s) 453, 615, 649
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 237, 504
TspRI CASTG 1 cut(s) 27
XapI RAATTY 4 cut(s) 145, 224, 379, 415
XceI RCATGY 3 cut(s) 207, 325, 643
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 520
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.