Rmu_sc0003399.1_g000010

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003399.1
OG0000251
Physical Location & Seq
Forward (+)
59991 .. 64530
4540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003399.1_g000010.1.cds

Sequence Viewer

Length: 711 bp
atgcgaaaatttcaagatctccacggacaaagaacccgacccgtatgctcccgacgaagacgacgactcctccaccctccttctactcctcaaacgcctcccaaggacttcggcagcggcgcctccctcaactacttcgacgacaacgacggcgatttctgctctgtgatagtcaagagcgaccgcaatcggaccacgaggaggtcgcgtaaattccaagtctcaaatttggaggccaagagtcttgaaaccgtctacaccgctccggcctgcaataaattcagagaagcaaagccgttgagcaagttgtgcttggagaactccgatgagatagagtccctagcgtctggcttcaaggccatggctgcaaagaaagttatagcaatatgtcaatccggaggggacttcgtgacggataaggatgggagtttatcgtacagtggcggagacgcgtatgcagttgacattgatcagcaaactctgctgagtgatttcaagtctgaaatagcggagatgtttagctgtagtgctgatacaatgtcgctcaagtatttccttccgggcaataagaagacgctcattacaatctctaaagataaggacctgcagcggatggtcaatttcctgggggattcggtcagtgtggatgtctttgtcatctcggaggaaactgctgctcgaaatacatccaacatgcctgctagtaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

236

Amino Acids

26.21

Weight (kDa)

8.85

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 612
AccB1I GGYRCC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 255
AccII CGCG 2 cut(s) 208, 452
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 6 cut(s) 117, 184, 261, 444, 509, 610
AcsI RAATTY 4 cut(s) 8, 212, 226, 278
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 450
AgsI TTSAA 4 cut(s) 14, 248, 355, 496
AjnI CCWGG 1 cut(s) 624
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 226, 441
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 3 cut(s) 234, 267, 357
ApeKI GCWGC 4 cut(s) 114, 365, 607, 674
ApoI RAATTY 4 cut(s) 8, 212, 226, 278
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 192, 601
AsuC2I CCSGG 1 cut(s) 561
AvaII GGWCC 2 cut(s) 192, 601
BanI GGYRCC 1 cut(s) 119
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 64, 578
BbvI GCAGC 4 cut(s) 126, 352, 619, 661
BccI CCATC 2 cut(s) 416, 607
BceAI ACGGC 2 cut(s) 166, 280
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 626
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 226, 441
BfaI CTAG 2 cut(s) 341, 702
BfmI CTRYAG 2 cut(s) 523, 605
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 612
BglII AGATCT 1 cut(s) 16
BisI GCNGC 5 cut(s) 115, 118, 366, 608, 675
BlsI GCNGC 5 cut(s) 116, 119, 367, 609, 676
Bme1390I CCNGG 2 cut(s) 561, 626
Bme18I GGWCC 2 cut(s) 192, 601
BmgT120I GGNCC 2 cut(s) 192, 601
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 561, 626
BpiI GAAGAC 2 cut(s) 64, 578
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 22, 102, 360, 625
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 6 cut(s) 51, 54, 81, 84, 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 1 cut(s) 626
BseDI CCNNGG 4 cut(s) 22, 102, 360, 625
BseGI GGATG 4 cut(s) 427, 618, 652, 686
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 3 cut(s) 59, 78, 214
BseXI GCAGC 4 cut(s) 126, 352, 619, 661
Bsh1236I CGCG 2 cut(s) 208, 452
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 236, 269, 359
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 184
BsiSI CCGG 3 cut(s) 266, 396, 560
BslFI GGGAC 2 cut(s) 322, 416
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 226, 441
BsmBI CGTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 322, 416
BsnI GGCC 3 cut(s) 236, 269, 359
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 2 cut(s) 16, 469
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 6 cut(s) 117, 184, 261, 444, 509, 610
BspANI GGCC 3 cut(s) 236, 269, 359
BspCNI CTCAG 1 cut(s) 477
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 2 cut(s) 208, 452
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 22, 102, 360, 625
BssMI GATC 2 cut(s) 16, 469
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 102, 360
Bst2BI CACGAG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 2 cut(s) 253, 440
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 309, 481
BstC8I GCNNGC 2 cut(s) 271, 699
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 2 cut(s) 22, 360
BstF5I GGATG 4 cut(s) 427, 618, 652, 686
BstFNI CGCG 2 cut(s) 208, 452
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 19, 472
BstMAI GTCTC 2 cut(s) 226, 441
BstMBI GATC 2 cut(s) 16, 469
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 4 cut(s) 159, 309, 365, 481
BstNI CCWGG 1 cut(s) 626
BstNSI RCATGY 1 cut(s) 697
BstSCI CCNGG 2 cut(s) 559, 624
BstSFI CTRYAG 2 cut(s) 523, 605
BstUI CGCG 2 cut(s) 208, 452
BstV1I GCAGC 4 cut(s) 126, 352, 619, 661
BstV2I GAAGAC 2 cut(s) 64, 578
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 3 cut(s) 236, 269, 359
BtgI CCRYGG 2 cut(s) 22, 360
BtsCI GGATG 4 cut(s) 427, 618, 652, 686
BtsIMutI CAGTG 2 cut(s) 445, 646
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 271, 699
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 192, 601
CseI GACGC 3 cut(s) 333, 458, 583
Csp6I GTAC 1 cut(s) 436
CviAII CATG 2 cut(s) 361, 694
CviJI RGCY 7 cut(s) 236, 269, 295, 351, 359, 365, 522
CviKI_1 RGCY 7 cut(s) 236, 269, 295, 351, 359, 365, 522
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 485
DinI GGCGCC 1 cut(s) 121
DpnI GATC 2 cut(s) 18, 471
DpnII GATC 2 cut(s) 16, 469
EciI GGCGGA 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 102, 360
Eco47I GGWCC 2 cut(s) 192, 601
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 624
EcoT14I CCWWGG 2 cut(s) 102, 360
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 102, 360
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 2 cut(s) 364, 697
FaiI YATR 6 cut(s) 46, 362, 380, 388, 456, 695
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 2 cut(s) 322, 416
FatI CATG 2 cut(s) 360, 693
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 115, 118, 366, 608, 675
FokI GGATG 4 cut(s) 434, 625, 659, 673
Fsp4HI GCNGC 5 cut(s) 115, 118, 366, 608, 675
FspBI CTAG 2 cut(s) 341, 702
GlaI GCGC 1 cut(s) 121
GluI GCNGC 5 cut(s) 115, 118, 366, 608, 675
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 3 cut(s) 236, 269, 359
HapII CCGG 3 cut(s) 266, 396, 560
HgaI GACGC 3 cut(s) 333, 458, 583
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 364, 697
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 4 cut(s) 66, 241, 335, 632
HpaII CCGG 3 cut(s) 266, 396, 560
Hpy166II GTNNAC 2 cut(s) 256, 463
Hpy188I TCNGA 5 cut(s) 192, 284, 325, 502, 664
Hpy188III TCNNGA 6 cut(s) 14, 51, 175, 245, 396, 409
Hpy8I GTNNAC 2 cut(s) 256, 463
Hpy99I CGWCG 4 cut(s) 57, 66, 143, 152
HpyAV CCTTC 2 cut(s) 90, 566
HpyCH4III ACNGT 2 cut(s) 253, 440
HpyCH4V TGCA 4 cut(s) 273, 368, 458, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 309, 365, 481
HpyF3I CTNAG 1 cut(s) 485
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 364, 697
HspAI GCGC 1 cut(s) 120
KasI GGCGCC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 2 cut(s) 16, 469
LmnI GCTCC 2 cut(s) 53, 268
LpnPI CCDG 8 cut(s) 279, 283, 333, 409, 573, 611, 617, 638
Lsp1109I GCAGC 4 cut(s) 126, 352, 619, 661
MaeI CTAG 2 cut(s) 341, 702
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 18, 471
MbiI CCGCTC 1 cut(s) 263
MboI GATC 2 cut(s) 16, 469
MboII GAAGA 2 cut(s) 69, 583
MflI RGATCY 1 cut(s) 16
MluCI AATT 5 cut(s) 8, 212, 226, 278, 619
MluI ACGCGT 1 cut(s) 450
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 3 cut(s) 60, 250, 344
MroI TCCGGA 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 117, 610
MspI CCGG 3 cut(s) 266, 396, 560
MspR9I CCNGG 2 cut(s) 561, 626
MvaI CCWGG 1 cut(s) 626
MvnI CGCG 2 cut(s) 208, 452
MwoI GCNNNNNNNGC 4 cut(s) 159, 309, 365, 481
NarI GGCGCC 1 cut(s) 120
NciI CCSGG 1 cut(s) 561
NcoI CCATGG 1 cut(s) 360
NdeII GATC 2 cut(s) 16, 469
NlaIII CATG 2 cut(s) 364, 697
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 697
PcsI WCGNNNNNNNCGW 2 cut(s) 61, 144
PfeI GAWTC 1 cut(s) 632
PkrI GCNGC 5 cut(s) 116, 119, 367, 609, 676
PleI GAGTC 3 cut(s) 60, 249, 343
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 3 cut(s) 60, 249, 343
PpuMI RGGWCCY 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 624
PspGI CCWGG 1 cut(s) 624
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 192, 601
PspPPI RGGWCCY 1 cut(s) 601
PstI CTGCAG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SatI GCNGC 5 cut(s) 115, 118, 366, 608, 675
Sau3AI GATC 2 cut(s) 16, 469
Sau96I GGNCC 2 cut(s) 192, 601
SchI GAGTC 3 cut(s) 60, 250, 344
ScrFI CCNGG 2 cut(s) 561, 626
SetI ASST 4 cut(s) 206, 524, 606, 710
SfcI CTRYAG 2 cut(s) 523, 605
SfoI GGCGCC 1 cut(s) 121
SinI GGWCC 2 cut(s) 192, 601
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 5 cut(s) 8, 212, 226, 278, 619
SsiI CCGC 6 cut(s) 117, 184, 261, 444, 509, 610
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 2 cut(s) 341, 702
StyD4I CCNGG 2 cut(s) 559, 624
StyI CCWWGG 2 cut(s) 102, 360
TaaI ACNGT 2 cut(s) 253, 440
TaqI TCGA 2 cut(s) 138, 679
TaqII GACCGA 1 cut(s) 625
TasI AATT 5 cut(s) 8, 212, 226, 278, 619
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 632
TscAI CASTG 2 cut(s) 445, 646
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 114, 365, 607, 674
Tsp45I GTSAC 1 cut(s) 409
TspGWI ACGGA 2 cut(s) 39, 428
TspRI CASTG 2 cut(s) 445, 646
VpaK11BI GGWCC 2 cut(s) 192, 601
XapI RAATTY 4 cut(s) 8, 212, 226, 278
XceI RCATGY 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 341, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.