pycom02g01800

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000251
Physical Location & Seq
Forward (+)
1074497 .. 1078866
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01800.4

Sequence Viewer

Length: 3099 bp
ATGCAGATGACGCTCTATAACAGTAGTAGAAAACAATCGTATTTATGCACTCTGGCCCAATTTCTATGCTTTCAAGTCTTTTGCATCATTCACCTCTTTTATCGTTATTTCCAGAAGGCCCCAAAATCTAGGGTTTCATCACACCCTGCACCTCCTTCTCTGGTTGTGATGGCGAGGACAAAGCTTATCCTGATCTGCCAATCTGGTGGGGAATTTGTTGTCAAGGATGATGGATCCATGTCATATACGGGAGGAGATGCACAGGCAGTAGATATCAATCATGAAACCCGATTTGATGATCTCAAGTTAAAATTGGCTGAAATGTTGAATTTAGAATATAAATCAGTGATCATGAAGTATTTTCTCCCAGGAAATACGCGAACTCTCATCACTTTATCCAATGATAAGGACCTGAAAAGGATGTATGAATTCCATGGGAATTCAGTAACTGCTGATGTTTTTGTCCAGGGGAAAGCAGGTTTTGATGCTGAAGCCTTCAACACACCAAAAAGGGCATGTGGGATAAAAGTGGCTGAATCCGTGACCCCTGTTGCCGCCTTCACGACTTCAGCTGCCACTTTACATGCTAGTCCTCTATCAAAACAACCTGGATGTATTATGCCTGTCGAAGAAAGGACCCAAATTTCAGGTGAAGTGGCGCATATGCCTACCATGTCCCCTGTGTTTACATCCACCGATAATGCAGATGCTACCAGTTCCATTCCAACTGGTTCCATATCTACTACTGCAGATGCAAGTCGGCACAGCTTGGACGTATTTGATATGAACTGTACTCCTGCTGATACTGTTAAGAAGCGAAGGCGCACTGCTGCCTGGAAAATTGGTGCCAATGGTCCTACCATTGGTTCTGTCACTGACCATGTTGGGGAGAAAAGAAAACATACGTCCAAGAAGAAGAATATTCCTAGCCGGAACATTGCTACAGAAACTGATGATGTGGATGAGAGGCAAGATATCCTTCACAGTAAAGATAGTAGTACTGGCAATGACCCTATCCAGGCTAGTCTAGTGGAATCAAATGATGCTCCACCTGAACTTTTACTCAAAATATGGAAAGATGCTATCACTGGGATTGGACAGGAATTCAACAATGCTAAAGAGTTTCGTGATGCACTGCAAAAATATGCCGTTGCCCATCGTTTCATGTATAAGTTAAAAAAGAATGATACTAACCGTGCAAGTGGCAGATGTATAGTCGAAGATTGTTCCTGGAAAATTTTTGCATCTTGGGACACATCTGTGAAAAAGTTTAGGATAAAGAGTATGACTGAAACACATACTTGTGAATCAGAGTTCTTGAAATCTTATCATCCAAAACGAAGTTGGTTGGTTAGCATCGTAAAAGATAGATTACTTGAGCGCCCACATCTCAAGACGAAGGAACTTGCCAACATCATTCGTCAAGATTTTGGGATTGCTGTGAACTATACTCATGTTTGGCGTGCAGTTGAGGATGCCAAGGAGCGACTTCTAGGTTCATATAAAGAGGCATATGACCAGTTACCGAGATTTTGTGAGAAGATGACAGAGGCAAATCCTGGCAGTAATATTGAGCTTTTCACTGGTGATGAGAGTAGATTTCAGCGCCTTTTTGTGTGTTTTCATGCTTCAATACATGGTTTTCAGAATGGTTGTCGCCCTATTCTATTTCTCGATGCTGCATCTCTAAAATCAAGATACCATGAGACTTTTTTGGCAGCTACTGCTTTGGATGGAGATGACGGTCTTTTCCCGGTTGCATTTGCTATCGTAGACACTGAGAATGATGATAACTGGCGGTGGTTTTTGGAGCAGTTAAGATCTGTACTTTCAACTACTCAATCCTTAACTTTTGTCTCGGATAGAGAGAAGGGACTAAAGAAATCAGTGCTCGAAGTATTTGAGAATGCCCACCATGGATATTCTATGCACCACCTTCTGCAAAGCTTCATGAGAAACTTGAATGGTCCATACCATGGAGATGGGAAGGGTTCCTTGCCAATCAATTTTATGGCTGCCGCCCATGCAATCCGACTTGATGGGTTTAAAACAAGTATTGATCAAATTAGACGGGTTTCTGCTCGAGCTTATGCCTGGGTCCAGCAAATCGAACCAGAATGTTGGACAAATGCATTATTTAAAGGTGAGCCCTATAACCATTTCACATCAGATGTTGCAGAGACATACATCAAGTGGATAGAGGAAGTGCAGGAGTTACCCATTGTGCCAAAGATTGAAGCGCTATGTTCTAAGTTCATGGAGTTGATAAATACTCGTCGAACATATTCAAGTAAGTGGCCCACAAAACTTACTCCATCCAAGGAGGAAAAACTGCAACGAGAAGCCAGTTGCGCATATGGTCTTAAAGTCTTGTTTTCATCCGATACTCTCTTTGAGGTTCACAAGGATTCCATCAACGTTGTGGATATTAGTAAACGGTACTGTAGTTGTCTGGATTGGAATGCAACTGGTCTACCATGCTGCCATGCTATTGCTGTCTTCAACTGCACTGGTAGGGATGTGTATGATTATTGTTCGAGATACTATAAATCTGACAACTATCGTTTGACGTATTCTGAGTCCATAAACTCTGCATTGGCCCCTTTTGAGTCTTCGGATGGTGAGATTACTGATGCAGCACATGTGCTTCCTCCATCAGTCTCTAAGCAACAAGAGAAGAAAAGCCAGGCCAAAACAAAGAGTTCGTCGGCAAGGACAGTTTTTTGCTCTAGGTGCAAGGATTCAGGGCATAATAAAAAAACCTGCAAGGAACCCATGGATGATCCTTTGTCAAGTATGGACCTCATAGATGCTCCTATATCAAGTATGGACCCCGTAGATGCTCCTTCATCAAGCATCGTCCCTGTAGATGCCCTTTCATCAAGCGTCATCACCGTCGATGCCCCTCCATCAAGTATTGACCCCGTCGATGCCCCTCCATCAAGTATTGACCCCGTCGATGCCCCTCCATCAAGTATCGTCCCCACAGATGCTCCTTCATCAAGTATCGTCCCCATAGATGCCGCTCCATCAAGTATCGACCACGTAGATGCTCATTCATCAAGTATCGTTCCCATAGATCCTCCAAGTATCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

1033

Amino Acids

114.93

Weight (kDa)

6.47

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2353
Acc36I ACCTGC 2 cut(s) 467, 2771
AccB1I GGYRCC 1 cut(s) 845
AccB7I CCANNNNNTGG 1 cut(s) 1976
AccBSI CCGCTC 1 cut(s) 3026
AccI GTMKAC 2 cut(s) 1773, 2473
AccII CGCG 1 cut(s) 379
AciI CCGC 4 cut(s) 555, 1798, 2019, 3024
AclI AACGTT 1 cut(s) 2418
AclWI GGATC 4 cut(s) 228, 241, 2777, 3074
AcsI RAATTY 7 cut(s) 212, 328, 428, 439, 642, 1103, 1236
AcuI CTGAAG 2 cut(s) 510, 552
AfaI GTAC 4 cut(s) 793, 1000, 1827, 2441
AfeI AGCGCT 1 cut(s) 2241
AfiI CCNNNNNNNGG 4 cut(s) 863, 886, 1018, 1976
AflIII ACRYGT 1 cut(s) 2641
AjnI CCWGG 9 cut(s) 367, 465, 607, 833, 1017, 1229, 1558, 2093, 2685
AleI CACNNNNGTG 1 cut(s) 1259
AluBI AGCT 7 cut(s) 184, 572, 768, 1576, 1721, 1947, 2087
AluI AGCT 7 cut(s) 184, 572, 768, 1576, 1721, 1947, 2087
Alw21I GWGCWC 1 cut(s) 1893
Alw26I GTCTC 4 cut(s) 1700, 1861, 2174, 2665
AlwI GGATC 4 cut(s) 228, 241, 2777, 3074
AlwNI CAGNNNCTG 3 cut(s) 449, 950, 1724
Ama87I CYCGRG 1 cut(s) 2082
Aor51HI AGCGCT 1 cut(s) 2241
AoxI GGCC 5 cut(s) 54, 117, 2297, 2598, 2688
ApeKI GCWGC 7 cut(s) 572, 830, 1679, 1718, 2015, 2481, 2636
ApoI RAATTY 7 cut(s) 212, 328, 428, 439, 642, 1103, 1236
ArsI GACNNNNNNTTYG 2 cut(s) 2690, 2722
Asp700I GAANNNNTTC 1 cut(s) 2284
AspLEI GCGC 6 cut(s) 661, 825, 1383, 1608, 2242, 2354
AsuC2I CCSGG 1 cut(s) 1754
AsuHPI GGTGA 6 cut(s) 83, 662, 1598, 2156, 2633, 2884
AvaI CYCGRG 1 cut(s) 2082
AvaII GGWCC 7 cut(s) 409, 636, 854, 1967, 2098, 2800, 2830
BaeI ACNNNNGTAYC 2 cut(s) 2431, 2464
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 2151
BbsI GAAGAC 2 cut(s) 2491, 2604
Bbv12I GWGCWC 1 cut(s) 1893
BbvI GCAGC 7 cut(s) 559, 817, 1666, 1730, 2002, 2468, 2648
BceAI ACGGC 1 cut(s) 1133
BciT130I CCWGG 9 cut(s) 369, 467, 609, 835, 1019, 1231, 1560, 2095, 2687
BclI TGATCA 2 cut(s) 348, 2059
BcnI CCSGG 1 cut(s) 1754
BcoDI GTCTC 4 cut(s) 1700, 1861, 2174, 2665
BfaI CTAG 7 cut(s) 129, 588, 927, 1023, 1028, 1493, 2730
BfmI CTRYAG 4 cut(s) 747, 942, 2443, 2865
BfoI RGCGCY 3 cut(s) 1384, 1609, 2243
BfuAI ACCTGC 2 cut(s) 467, 2771
BglII AGATCT 1 cut(s) 1820
BmcAI AGTACT 1 cut(s) 1000
Bme18I GGWCC 7 cut(s) 409, 636, 854, 1967, 2098, 2800, 2830
BmeT110I CYCGRG 1 cut(s) 2082
BmrI ACTGGG 1 cut(s) 1098
BmuI ACTGGG 1 cut(s) 1098
BpiI GAAGAC 2 cut(s) 2491, 2604
BpuEI CTTGAG 3 cut(s) 287, 1376, 1397
BpuMI CCSGG 1 cut(s) 1754
BsaAI YACGTR 1 cut(s) 3046
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 9 cut(s) 367, 433, 466, 1479, 1915, 1975, 2094, 2319, 2775
BsaXI ACNNNNNCTCC 2 cut(s) 2977, 3007
Bsc4I CCNNNNNNNGG 4 cut(s) 863, 886, 1018, 1976
Bse3DI GCAATG 2 cut(s) 936, 1012
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 9 cut(s) 369, 467, 609, 835, 1019, 1231, 1560, 2095, 2687
BseDI CCNNGG 9 cut(s) 367, 433, 466, 1479, 1915, 1975, 2094, 2319, 2775
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 4 cut(s) 863, 886, 1018, 1976
BseMI GCAATG 2 cut(s) 936, 1012
BseMII CTCAG 2 cut(s) 1770, 2568
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 7 cut(s) 559, 817, 1666, 1730, 2002, 2468, 2648
BsgI GTGCAG 4 cut(s) 132, 1485, 2228, 2491
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 5 cut(s) 56, 119, 2299, 2600, 2690
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 1 cut(s) 1893
BsiHKCI CYCGRG 1 cut(s) 2082
BsiSI CCGG 2 cut(s) 931, 1754
BslFI GGGAC 6 cut(s) 661, 1265, 1887, 2846, 2966, 2996
BslI CCNNNNNNNGG 4 cut(s) 863, 886, 1018, 1976
BsmAI GTCTC 4 cut(s) 1700, 1861, 2174, 2665
BsmFI GGGAC 6 cut(s) 661, 1265, 1887, 2846, 2966, 2996
BsmI GAATGC 2 cut(s) 1912, 2467
BsnI GGCC 5 cut(s) 56, 119, 2299, 2600, 2690
BsoBI CYCGRG 1 cut(s) 2082
Bsp1286I GDGCHC 2 cut(s) 1893, 2151
Bsp143I GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
Bsp19I CCATGG 4 cut(s) 433, 1915, 1975, 2775
BspACI CCGC 4 cut(s) 555, 1798, 2019, 3024
BspANI GGCC 5 cut(s) 56, 119, 2299, 2600, 2690
BspCNI CTCAG 2 cut(s) 1771, 2569
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 3 cut(s) 280, 351, 1950
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 2 cut(s) 467, 2771
BspPI GGATC 4 cut(s) 228, 241, 2777, 3074
BspT107I GGYRCC 1 cut(s) 845
BsrBI CCGCTC 1 cut(s) 3026
BsrDI GCAATG 2 cut(s) 936, 1012
BssECI CCNNGG 9 cut(s) 367, 433, 466, 1479, 1915, 1975, 2094, 2319, 2775
BssMI GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
BssT1I CCWWGG 6 cut(s) 433, 1479, 1915, 1975, 2319, 2775
Bst2UI CCWGG 9 cut(s) 369, 467, 609, 835, 1019, 1231, 1560, 2095, 2687
BstAPI GCANNNNNTGC 1 cut(s) 1724
BstBAI YACGTR 1 cut(s) 3046
BstC8I GCNNGC 1 cut(s) 1464
BstDEI CTNAG 4 cut(s) 1779, 2250, 2577, 2664
BstDSI CCRYGG 4 cut(s) 433, 1915, 1975, 2775
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 3 cut(s) 1384, 1609, 2243
BstHHI GCGC 6 cut(s) 661, 825, 1383, 1608, 2242, 2354
BstKTI GATC 8 cut(s) 195, 236, 301, 351, 1823, 2062, 2785, 3082
BstMAI GTCTC 4 cut(s) 1700, 1861, 2174, 2665
BstMBI GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
BstMWI GCNNNNNNNGC 5 cut(s) 10, 1724, 2024, 2351, 2733
BstNI CCWGG 9 cut(s) 369, 467, 609, 835, 1019, 1231, 1560, 2095, 2687
BstNSI RCATGY 3 cut(s) 519, 587, 2645
BstSFI CTRYAG 4 cut(s) 747, 942, 2443, 2865
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 7 cut(s) 559, 817, 1666, 1730, 2002, 2468, 2648
BstV2I GAAGAC 2 cut(s) 2491, 2604
BstX2I RGATCY 3 cut(s) 233, 1820, 3079
BstXI CCANNNNNNTGG 3 cut(s) 206, 1982, 2121
BstYI RGATCY 3 cut(s) 233, 1820, 3079
BsuRI GGCC 5 cut(s) 56, 119, 2299, 2600, 2690
BtgI CCRYGG 4 cut(s) 433, 1915, 1975, 2775
BtsI GCAGTG 2 cut(s) 825, 1133
BtsIMutI CAGTG 9 cut(s) 351, 825, 873, 1086, 1133, 1581, 1776, 1893, 2508
BveI ACCTGC 2 cut(s) 467, 2771
Cac8I GCNNGC 1 cut(s) 1464
CaiI CAGNNNCTG 3 cut(s) 449, 950, 1724
CciI TCATGA 3 cut(s) 280, 351, 1950
CfoI GCGC 6 cut(s) 661, 825, 1383, 1608, 2242, 2354
CseI GACGC 2 cut(s) 19, 2875
Csp6I GTAC 4 cut(s) 792, 999, 1826, 2440
CviQI GTAC 4 cut(s) 792, 999, 1826, 2440
DdeI CTNAG 4 cut(s) 1779, 2250, 2577, 2664
DpnI GATC 8 cut(s) 194, 235, 300, 350, 1822, 2061, 2784, 3081
DpnII GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
DraI TTTAAA 2 cut(s) 2047, 2140
Eco130I CCWWGG 6 cut(s) 433, 1479, 1915, 1975, 2319, 2775
Eco24I GRGCYC 1 cut(s) 2151
Eco32I GATATC 2 cut(s) 274, 976
Eco47I GGWCC 7 cut(s) 409, 636, 854, 1967, 2098, 2800, 2830
Eco47III AGCGCT 1 cut(s) 2241
Eco57I CTGAAG 2 cut(s) 510, 552
Eco88I CYCGRG 1 cut(s) 2082
EcoO109I RGGNCCY 3 cut(s) 118, 409, 636
EcoRI GAATTC 3 cut(s) 428, 439, 1103
EcoRII CCWGG 9 cut(s) 367, 465, 607, 833, 1017, 1229, 1558, 2093, 2685
EcoRV GATATC 2 cut(s) 274, 976
EcoT14I CCWWGG 6 cut(s) 433, 1479, 1915, 1975, 2319, 2775
EcoT22I ATGCAT 1 cut(s) 2134
EcoT38I GRGCYC 1 cut(s) 2151
ErhI CCWWGG 6 cut(s) 433, 1479, 1915, 1975, 2319, 2775
FalI AAGNNNNNCTT 5 cut(s) 963, 995, 1979, 2011, 3079
FaqI GGGAC 6 cut(s) 661, 1265, 1887, 2846, 2966, 2996
FauNDI CATATG 3 cut(s) 663, 1513, 2356
FbaI TGATCA 2 cut(s) 348, 2059
FblI GTMKAC 2 cut(s) 1773, 2473
FriOI GRGCYC 1 cut(s) 2151
FspBI CTAG 7 cut(s) 129, 588, 927, 1023, 1028, 1493, 2730
FspI TGCGCA 1 cut(s) 2353
GlaI GCGC 6 cut(s) 660, 824, 1382, 1607, 2241, 2353
HaeII RGCGCY 3 cut(s) 1384, 1609, 2243
HaeIII GGCC 5 cut(s) 56, 119, 2299, 2600, 2690
HapII CCGG 2 cut(s) 931, 1754
HgaI GACGC 2 cut(s) 19, 2875
HhaI GCGC 6 cut(s) 661, 825, 1383, 1608, 2242, 2354
Hin6I GCGC 6 cut(s) 659, 823, 1381, 1606, 2240, 2352
HinP1I GCGC 6 cut(s) 659, 823, 1381, 1606, 2240, 2352
HindIII AAGCTT 2 cut(s) 182, 1945
HinfI GANTC 7 cut(s) 536, 1034, 1307, 2408, 2579, 2609, 2741
HpaII CCGG 2 cut(s) 931, 1754
HphI GGTGA 6 cut(s) 83, 662, 1598, 2156, 2633, 2884
Hpy166II GTNNAC 6 cut(s) 687, 1444, 1774, 2401, 2435, 2474
Hpy188I TCNGA 9 cut(s) 1312, 1647, 1861, 2033, 2170, 2383, 2554, 2578, 2617
Hpy8I GTNNAC 6 cut(s) 687, 1444, 1774, 2401, 2435, 2474
Hpy99I CGWCG 5 cut(s) 2280, 2710, 2900, 2930, 2960
HpyCH4IV ACGT 5 cut(s) 774, 905, 2418, 2570, 3045
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 1724, 2024, 2351, 2733
HpyF3I CTNAG 4 cut(s) 1779, 2250, 2577, 2664
HpySE526I ACGT 5 cut(s) 774, 905, 2418, 2570, 3045
HspAI GCGC 6 cut(s) 659, 823, 1381, 1606, 2240, 2352
Ksp22I TGATCA 2 cut(s) 348, 2059
Kzo9I GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
LmnI GCTCC 7 cut(s) 1051, 1483, 1810, 2818, 2848, 2998, 3031
Lsp1109I GCAGC 7 cut(s) 559, 817, 1666, 1730, 2002, 2468, 2648
MaeI CTAG 7 cut(s) 129, 588, 927, 1023, 1028, 1493, 2730
MaeII ACGT 5 cut(s) 774, 905, 2418, 2570, 3045
MaeIII GTNAC 5 cut(s) 445, 541, 871, 1521, 2214
MalI GATC 8 cut(s) 194, 235, 300, 350, 1822, 2061, 2784, 3081
MbiI CCGCTC 1 cut(s) 3026
MboI GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
MboII GAAGA 8 cut(s) 641, 925, 928, 1232, 1552, 2491, 2604, 2689
MflI RGATCY 3 cut(s) 233, 1820, 3079
MhlI GDGCHC 2 cut(s) 1893, 2151
MlyI GAGTC 2 cut(s) 2588, 2618
MmeI TCCRAC 3 cut(s) 749, 2056, 2102
Mph1103I ATGCAT 1 cut(s) 2134
MroXI GAANNNNTTC 1 cut(s) 2284
MseI TTAA 8 cut(s) 308, 810, 1175, 1817, 1847, 2046, 2139, 2364
MslI CAYNNNNRTG 4 cut(s) 1259, 1302, 1980, 3048
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 931, 1754
Mva1269I GAATGC 2 cut(s) 1912, 2467
MvaI CCWGG 9 cut(s) 369, 467, 609, 835, 1019, 1231, 1560, 2095, 2687
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 5 cut(s) 10, 1724, 2024, 2351, 2733
NciI CCSGG 1 cut(s) 1754
NcoI CCATGG 4 cut(s) 433, 1915, 1975, 2775
NdeI CATATG 3 cut(s) 663, 1513, 2356
NdeII GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
NmuCI GTSAC 2 cut(s) 541, 871
NsbI TGCGCA 1 cut(s) 2353
NsiI ATGCAT 1 cut(s) 2134
NspI RCATGY 3 cut(s) 519, 587, 2645
OliI CACNNNNGTG 1 cut(s) 1259
PaeR7I CTCGAG 1 cut(s) 2082
PagI TCATGA 3 cut(s) 280, 351, 1950
PciI ACATGT 1 cut(s) 2641
PctI GAATGC 2 cut(s) 1912, 2467
PdmI GAANNNNTTC 1 cut(s) 2284
PfeI GAWTC 5 cut(s) 536, 1034, 1307, 2408, 2741
PflFI GACNNNGTC 2 cut(s) 2924, 2954
PflMI CCANNNNNTGG 1 cut(s) 1976
PfoI TCCNGGA 1 cut(s) 1229
PleI GAGTC 2 cut(s) 2587, 2617
PpsI GAGTC 2 cut(s) 2587, 2617
Ppu21I YACGTR 1 cut(s) 3046
PpuMI RGGWCCY 2 cut(s) 409, 636
PscI ACATGT 1 cut(s) 2641
Psp1406I AACGTT 1 cut(s) 2418
Psp5II RGGWCCY 2 cut(s) 409, 636
Psp6I CCWGG 9 cut(s) 367, 465, 607, 833, 1017, 1229, 1558, 2093, 2685
PspGI CCWGG 9 cut(s) 367, 465, 607, 833, 1017, 1229, 1558, 2093, 2685
PspPPI RGGWCCY 2 cut(s) 409, 636
PspXI VCTCGAGB 1 cut(s) 2082
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 3 cut(s) 449, 950, 1724
PsuI RGATCY 3 cut(s) 233, 1820, 3079
PsyI GACNNNGTC 2 cut(s) 2924, 2954
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 4 cut(s) 793, 1000, 1827, 2441
RsaNI GTAC 4 cut(s) 792, 999, 1826, 2440
RseI CAYNNNNRTG 4 cut(s) 1259, 1302, 1980, 3048
SaqAI TTAA 8 cut(s) 308, 810, 1175, 1817, 1847, 2046, 2139, 2364
Sau3AI GATC 8 cut(s) 192, 233, 298, 348, 1820, 2059, 2782, 3079
ScaI AGTACT 1 cut(s) 1000
SchI GAGTC 2 cut(s) 2588, 2618
SduI GDGCHC 2 cut(s) 1893, 2151
SfcI CTRYAG 4 cut(s) 747, 942, 2443, 2865
Sfr274I CTCGAG 1 cut(s) 2082
SinI GGWCC 7 cut(s) 409, 636, 854, 1967, 2098, 2800, 2830
SlaI CTCGAG 1 cut(s) 2082
SmiMI CAYNNNNRTG 4 cut(s) 1259, 1302, 1980, 3048
SmlI CTYRAG 4 cut(s) 302, 1376, 1391, 2082
SmoI CTYRAG 4 cut(s) 302, 1376, 1391, 2082
SsiI CCGC 4 cut(s) 555, 1798, 2019, 3024
SspI AATATT 2 cut(s) 922, 1570
SspMI CTAG 7 cut(s) 129, 588, 927, 1023, 1028, 1493, 2730
StyI CCWWGG 6 cut(s) 433, 1479, 1915, 1975, 2319, 2775
TaiI ACGT 5 cut(s) 777, 908, 2421, 2573, 3048
TatI WGTACW 3 cut(s) 791, 998, 1825
TauI GCSGC 3 cut(s) 557, 2021, 3026
TfiI GAWTC 5 cut(s) 536, 1034, 1307, 2408, 2741
Tru1I TTAA 8 cut(s) 308, 810, 1175, 1817, 1847, 2046, 2139, 2364
Tru9I TTAA 8 cut(s) 308, 810, 1175, 1817, 1847, 2046, 2139, 2364
TscAI CASTG 9 cut(s) 351, 832, 880, 1093, 1140, 1588, 1783, 1893, 2515
TseFI GTSAC 2 cut(s) 541, 871
TseI GCWGC 7 cut(s) 572, 830, 1679, 1718, 2015, 2481, 2636
Tsp45I GTSAC 2 cut(s) 541, 871
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 9 cut(s) 351, 832, 880, 1093, 1140, 1588, 1783, 1893, 2515
Tth111I GACNNNGTC 2 cut(s) 2924, 2954
Van91I CCANNNNNTGG 1 cut(s) 1976
VpaK11BI GGWCC 7 cut(s) 409, 636, 854, 1967, 2098, 2800, 2830
XapI RAATTY 7 cut(s) 212, 328, 428, 439, 642, 1103, 1236
XceI RCATGY 3 cut(s) 519, 587, 2645
XcmI CCANNNNNNNNNTGG 2 cut(s) 1341, 2419
XhoI CTCGAG 1 cut(s) 2082
XmiI GTMKAC 2 cut(s) 1773, 2473
XmnI GAANNNNTTC 1 cut(s) 2284
XspI CTAG 7 cut(s) 129, 588, 927, 1023, 1028, 1493, 2730
ZrmI AGTACT 1 cut(s) 1000
Zsp2I ATGCAT 1 cut(s) 2134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.