Rorug02G0614200

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
73191065 .. 73193203
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614200.1

Sequence Viewer

Length: 1074 bp
ATGGACTATAGCAGACCTGAGTCATCTGAAACTCTGAGGAACAAGTGTGCTGCATGCTTCAGGCAGTTCAACAAGATCGAGCACCTGGTGGAGCACATGAGAACCTCATACCACTCTTCTCATGAACCGTCGTGCGGAATCTGTAAGAAGCACTGCAGGTCCTTTGAATCTCTCAGGGAACATGTCATAGGGCCATTGCCAAAACAAGAATGCAAGAACATATTTAGCAGCAGAGGATGCAAATTCTGCTTATCTGTCTTTGATAGCCCTTATACTCTCAGGCTTCACCAGGACAGATGCCAGCTCTCCGGCGTCACTGGATTAATTGGTCGGTTTGGTAACTTGGGCATTCGTGACAATCTGGATCATGGTAACTACACAAGAGGCAGTAGTGGTCAAACTGTTGCCCTTGCTTGCAAGATGGTTGGTGGGGGAAGTGATGGCTCCCTAGATCTCTGCGGTAGGGTTTGTCTCACTGATGAATATGATAACATCATCTTCCACACTTATGTCAAGCCACCAATGCCAGTCACAAACTATAGGTATGAAACAACTGGGATTCGTCCTGAATACTTGAGGGACGCAATGCCACAGAGGCAAGTGCAAAAGAAGCTACAAGACTTTTTGTGCAATGGGGAACCAATGTGGAAGATTCGACCTAGAGCCGGAAAAGCTAGAATTCTTGTGGGTCATGGTTTGGATCATGATCTCGACTCTCTGCAAATTGAATACCCAGCACTCATGATCAGGGATACTGCAAAATATCCTCCACTGATGAAAACAAGCAAGCTCAGCAACTCACTCAAGTATCTAACACAAGCATATCTCGGGTATGACATTCAAAGTGGGATTCAAGACCCTTATGAGGATTGTGTTGCAACAATGAAGCTTTACATGCGAATGAGATCCCAAGTTCACAAGATAGAGCCCTATCCACTTGCTACTGATCCGCAAAACCGAAATAATTTTGCATCGTGGCGGCAAAACGAGCTTGAAAGGATGAGCCCTGAACAAATGTTGGACATTTCCAGGTCTGATTTCTACTGCTGGTGCTTGGACCGCCGGGATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

357

Amino Acids

41.13

Weight (kDa)

8.61

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AciI CCGC 5 cut(s) 135, 459, 950, 979, 1060
AclWI GGATC 4 cut(s) 372, 708, 900, 941
AcsI RAATTY 2 cut(s) 242, 678
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 134, 665, 865
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 6 cut(s) 70, 167, 728, 842, 854, 995
AjnI CCWGG 3 cut(s) 84, 288, 1028
AluBI AGCT 6 cut(s) 304, 613, 674, 790, 889, 991
AluI AGCT 6 cut(s) 304, 613, 674, 790, 889, 991
Alw21I GWGCWC 2 cut(s) 84, 96
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 4 cut(s) 372, 708, 900, 941
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 50, 228
ApoI RAATTY 2 cut(s) 242, 678
AseI ATTAAT 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 159, 191, 1057
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 2 cut(s) 159, 1057
BaeI ACNNNNGTAYC 2 cut(s) 791, 824
BanII GRGCYC 2 cut(s) 930, 1007
Bbv12I GWGCWC 2 cut(s) 84, 96
BbvI GCAGC 2 cut(s) 37, 240
BccI CCATC 2 cut(s) 415, 434
BciT130I CCWGG 3 cut(s) 86, 290, 1030
BciVI GTATCC 2 cut(s) 745, 1060
BclI TGATCA 1 cut(s) 744
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 3 cut(s) 449, 660, 675
BfmI CTRYAG 3 cut(s) 7, 154, 538
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 2 cut(s) 745, 1060
BglI GCCNNNNNGGC 1 cut(s) 595
BglII AGATCT 1 cut(s) 451
BisI GCNGC 3 cut(s) 51, 229, 980
BlpI GCTNAGC 1 cut(s) 791
BlsI GCNGC 3 cut(s) 52, 230, 981
Bme1390I CCNGG 4 cut(s) 86, 290, 1030, 1064
Bme18I GGWCC 2 cut(s) 159, 1057
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 3 cut(s) 159, 191, 1057
BmiI GGNNCC 2 cut(s) 445, 639
BmrFI CCNGG 4 cut(s) 86, 290, 1030, 1064
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 227, 287, 980
BmuI ACTGGG 1 cut(s) 564
BoxI GACNNNNGTC 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 791
BpuEI CTTGAG 2 cut(s) 595, 788
BpuMI CCSGG 1 cut(s) 1064
BsaBI GATNNNNATC 1 cut(s) 705
BsaHI GRCGYC 1 cut(s) 312
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 665, 865
Bse1I ACTGG 3 cut(s) 322, 527, 559
Bse3DI GCAATG 3 cut(s) 194, 591, 637
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 3 cut(s) 86, 290, 1030
BseGI GGATG 2 cut(s) 242, 1005
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 3 cut(s) 134, 665, 865
BseMI GCAATG 3 cut(s) 194, 591, 637
BseMII CTCAG 5 cut(s) 9, 26, 187, 292, 805
BseNI ACTGG 3 cut(s) 322, 527, 559
BseXI GCAGC 2 cut(s) 37, 240
BseYI CCCAGC 1 cut(s) 733
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 84, 96
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 3 cut(s) 309, 666, 1063
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 3 cut(s) 134, 665, 865
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 593
BsmI GAATGC 2 cut(s) 215, 348
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 827
Bsp1286I GDGCHC 4 cut(s) 84, 96, 930, 1007
Bsp143I GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
Bsp1720I GCTNAGC 1 cut(s) 791
BspACI CCGC 5 cut(s) 135, 459, 950, 979, 1060
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 5 cut(s) 10, 27, 186, 291, 804
BspHI TCATGA 3 cut(s) 121, 703, 741
BspLI GGNNCC 2 cut(s) 445, 639
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 4 cut(s) 372, 708, 900, 941
BsrDI GCAATG 3 cut(s) 194, 591, 637
BsrI ACTGG 3 cut(s) 322, 527, 559
BssMI GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 3 cut(s) 86, 290, 1030
Bst4CI ACNGT 2 cut(s) 129, 403
Bst6I CTCTTC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 312
BstAPI GCANNNNNTGC 2 cut(s) 237, 246
BstC8I GCNNGC 4 cut(s) 55, 302, 415, 788
BstDEI CTNAG 5 cut(s) 18, 35, 173, 278, 791
BstF5I GGATG 2 cut(s) 242, 1005
BstKTI GATC 8 cut(s) 78, 367, 454, 703, 709, 747, 908, 949
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
BstNI CCWGG 3 cut(s) 86, 290, 1030
BstNSI RCATGY 3 cut(s) 57, 185, 898
BstPAI GACNNNNGTC 1 cut(s) 19
BstSCI CCNGG 4 cut(s) 84, 288, 1028, 1062
BstSFI CTRYAG 3 cut(s) 7, 154, 538
BstV1I GCAGC 2 cut(s) 37, 240
BstX2I RGATCY 2 cut(s) 451, 905
BstYI RGATCY 2 cut(s) 451, 905
BsuI GTATCC 2 cut(s) 745, 1060
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 2 cut(s) 242, 1005
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 4 cut(s) 151, 315, 474, 770
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 55, 302, 415, 788
CciI TCATGA 3 cut(s) 121, 703, 741
Cfr13I GGNCC 3 cut(s) 159, 191, 1057
CseI GACGC 2 cut(s) 301, 590
CsiI ACCWGGT 1 cut(s) 84
CviAII CATG 9 cut(s) 54, 97, 122, 182, 368, 692, 704, 742, 895
DdeI CTNAG 5 cut(s) 18, 35, 173, 278, 791
DpnI GATC 8 cut(s) 77, 366, 453, 702, 708, 746, 907, 948
DpnII GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
DraIII CACNNNGTG 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 930, 1007
Eco47I GGWCC 2 cut(s) 159, 1057
Eco57I CTGAAG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 827
EcoO109I RGGNCCY 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 3 cut(s) 84, 288, 1028
EcoT38I GRGCYC 2 cut(s) 930, 1007
FaeI CATG 9 cut(s) 57, 100, 125, 185, 371, 695, 707, 745, 898
FaqI GGGAC 1 cut(s) 593
FatI CATG 9 cut(s) 53, 96, 121, 181, 367, 691, 703, 741, 894
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 51, 229, 980
FokI GGATG 2 cut(s) 249, 1012
FriOI GRGCYC 2 cut(s) 930, 1007
Fsp4HI GCNGC 3 cut(s) 51, 229, 980
FspBI CTAG 3 cut(s) 449, 660, 675
GluI GCNGC 3 cut(s) 51, 229, 980
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 309, 666, 1063
HgaI GACGC 2 cut(s) 301, 590
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 9 cut(s) 57, 100, 125, 185, 371, 695, 707, 745, 898
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 7 cut(s) 20, 138, 167, 559, 652, 713, 850
HpaII CCGG 3 cut(s) 309, 666, 1063
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 916
Hpy188I TCNGA 3 cut(s) 28, 36, 1036
Hpy188III TCNNGA 8 cut(s) 122, 353, 362, 566, 704, 710, 742, 854
Hpy8I GTNNAC 1 cut(s) 916
Hpy99I CGWCG 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 129, 403
HpyF3I CTNAG 5 cut(s) 18, 35, 173, 278, 791
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 9 cut(s) 57, 100, 125, 185, 371, 695, 707, 745, 898
Ksp22I TGATCA 1 cut(s) 744
Kzo9I GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
LmnI GCTCC 2 cut(s) 91, 449
Lsp1109I GCAGC 2 cut(s) 37, 240
LweI GCATC 3 cut(s) 227, 287, 980
MabI ACCWGGT 1 cut(s) 84
MaeI CTAG 3 cut(s) 449, 660, 675
MaeIII GTNAC 5 cut(s) 313, 338, 353, 371, 529
MalI GATC 8 cut(s) 77, 366, 453, 702, 708, 746, 907, 948
MboI GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
MboII GAAGA 3 cut(s) 108, 490, 661
MflI RGATCY 2 cut(s) 451, 905
MhlI GDGCHC 4 cut(s) 84, 96, 930, 1007
MluCI AATT 5 cut(s) 242, 324, 678, 723, 964
MlyI GAGTC 2 cut(s) 29, 707
MmeI TCCRAC 1 cut(s) 999
MnlI CCTC 8 cut(s) 30, 115, 227, 377, 570, 588, 777, 859
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 507, 899
MspI CCGG 3 cut(s) 309, 666, 1063
MspR9I CCNGG 4 cut(s) 86, 290, 1030, 1064
Mva1269I GAATGC 2 cut(s) 215, 348
MvaI CCWGG 3 cut(s) 86, 290, 1030
NciI CCSGG 1 cut(s) 1064
NdeII GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
NlaIII CATG 9 cut(s) 57, 100, 125, 185, 371, 695, 707, 745, 898
NlaIV GGNNCC 2 cut(s) 445, 639
NmuCI GTSAC 3 cut(s) 313, 353, 529
NspI RCATGY 3 cut(s) 57, 185, 898
PaeI GCATGC 1 cut(s) 57
PagI TCATGA 3 cut(s) 121, 703, 741
PciI ACATGT 1 cut(s) 181
PctI GAATGC 2 cut(s) 215, 348
PfeI GAWTC 5 cut(s) 138, 167, 559, 652, 850
PkrI GCNGC 3 cut(s) 52, 230, 981
PleI GAGTC 2 cut(s) 28, 707
PpsI GAGTC 2 cut(s) 28, 707
PpuMI RGGWCCY 1 cut(s) 159
PscI ACATGT 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 3 cut(s) 84, 288, 1028
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 3 cut(s) 84, 288, 1028
PspN4I GGNNCC 2 cut(s) 445, 639
PspPI GGNCC 3 cut(s) 159, 191, 1057
PspPPI RGGWCCY 1 cut(s) 159
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 451, 905
RseI CAYNNNNRTG 2 cut(s) 507, 899
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 3 cut(s) 51, 229, 980
Sau3AI GATC 8 cut(s) 75, 364, 451, 700, 706, 744, 905, 946
Sau96I GGNCC 3 cut(s) 159, 191, 1057
SchI GAGTC 2 cut(s) 29, 707
ScrFI CCNGG 4 cut(s) 86, 290, 1030, 1064
SduI GDGCHC 4 cut(s) 84, 96, 930, 1007
SexAI ACCWGGT 1 cut(s) 84
SfaNI GCATC 3 cut(s) 227, 287, 980
SfcI CTRYAG 3 cut(s) 7, 154, 538
SinI GGWCC 2 cut(s) 159, 1057
SmiMI CAYNNNNRTG 2 cut(s) 507, 899
SmlI CTYRAG 2 cut(s) 574, 803
SmoI CTYRAG 2 cut(s) 574, 803
SphI GCATGC 1 cut(s) 57
Sse9I AATT 5 cut(s) 242, 324, 678, 723, 964
SsiI CCGC 5 cut(s) 135, 459, 950, 979, 1060
SspMI CTAG 3 cut(s) 449, 660, 675
StyD4I CCNGG 4 cut(s) 84, 288, 1028, 1062
TaaI ACNGT 2 cut(s) 129, 403
TaqI TCGA 3 cut(s) 78, 655, 711
TasI AATT 5 cut(s) 242, 324, 678, 723, 964
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 5 cut(s) 138, 167, 559, 652, 850
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 4 cut(s) 158, 322, 481, 777
TseFI GTSAC 3 cut(s) 313, 353, 529
TseI GCWGC 2 cut(s) 50, 228
Tsp45I GTSAC 3 cut(s) 313, 353, 529
TspDTI ATGAA 5 cut(s) 138, 495, 561, 791, 899
TspRI CASTG 4 cut(s) 158, 322, 481, 777
VpaK11BI GGWCC 2 cut(s) 159, 1057
VspI ATTAAT 1 cut(s) 323
XapI RAATTY 2 cut(s) 242, 678
XceI RCATGY 3 cut(s) 57, 185, 898
XspI CTAG 3 cut(s) 449, 660, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.