pycom12g18690

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000251
Physical Location & Seq
Forward (+)
20810051 .. 20810728
678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18690.2

Sequence Viewer

Length: 582 bp
ATGGAGTTTGATGAGTTTAAATTGGAGGTGACAGAAATGTTTGGTTGCAACAATAACATGGTCTTCAAGTACTTCCTCCCTGGCAACAAGAAGACCCTGATTACTGTTTCCAATGACAAGGATCTCCATCGCGGATCGATCAAGTTCCATGGTGATTTTGCAACCATTGATGTTTATATCATGGAGGAAGTAGCTCCTCCTGATGTCTCGAACATGCTTGCCAGTCAAGCAGAACAACTCTGTCAGAAACTGTGGTTCCAGTTGATGCATCCCTCGATGTTGTGGACTTTGTGGGTGATACCACCCAGCATGAAATCCCACTCAATGCCTCGCTTGATGTTATTGATGATGCCAGCCCTATTGATGCACATATTGATATACCCTCTGAAATATCACCCGTTTTCCCTCTTGTTGGCCCCAATGATGAGAAGCATGCTAAAGGTGCACAGCAGTGGCAGAATGCAATTACTGGTGTGGGCCAAAGATTCAGCAGTGTTCATGAATTTCGTGAATTGTTGCGCAAATATGCCATTGCGCGTCAGTTCGCCTTTAGGTATAAGAAGAATGATAGTCATCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

194

Amino Acids

22.32

Weight (kDa)

8.93

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 520
AccII CGCG 2 cut(s) 132, 537
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 129, 142
AcsI RAATTY 1 cut(s) 502
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 211
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 2 cut(s) 129, 142
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 2 cut(s) 414, 477
ApaLI GTGCAC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 2 cut(s) 521, 537
AspS9I GGNCC 2 cut(s) 415, 477
AsuHPI GGTGA 4 cut(s) 40, 164, 307, 386
BaeGI GKGCMC 1 cut(s) 447
BbsI GAAGAC 2 cut(s) 55, 98
Bbv12I GWGCWC 1 cut(s) 447
BccI CCATC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 415, 477
BmiI GGNNCC 2 cut(s) 257, 417
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 4 cut(s) 255, 277, 339, 354
BpiI GAAGAC 2 cut(s) 55, 98
Bsa29I ATCGAT 1 cut(s) 137
BsaBI GATNNNNATC 2 cut(s) 126, 572
BsaJI CCNNGG 2 cut(s) 79, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 3 cut(s) 222, 259, 474
Bse3DI GCAATG 1 cut(s) 530
Bse8I GATNNNNATC 2 cut(s) 126, 572
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 79, 148
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 2 cut(s) 126, 572
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 530
BseNI ACTGG 3 cut(s) 222, 259, 474
BseRI GAGGAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 447
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 132, 537
BshFI GGCC 2 cut(s) 416, 479
BshVI ATCGAT 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 447
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 2 cut(s) 416, 479
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 121, 134, 138
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 132
BspANI GGCC 2 cut(s) 416, 479
BspDI ATCGAT 1 cut(s) 137
BspFNI CGCG 2 cut(s) 132, 537
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 257, 417
BspPI GGATC 2 cut(s) 129, 142
BsrDI GCAATG 1 cut(s) 530
BsrI ACTGG 3 cut(s) 222, 259, 474
BssECI CCNNGG 2 cut(s) 79, 148
BssMI GATC 3 cut(s) 121, 134, 138
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 106, 252
BstC8I GCNNGC 3 cut(s) 219, 354, 434
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 132, 537
BstHHI GCGC 2 cut(s) 521, 537
BstKTI GATC 3 cut(s) 124, 137, 141
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 3 cut(s) 121, 134, 138
BstMWI GCNNNNNNNGC 2 cut(s) 227, 442
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 217, 436
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 2 cut(s) 132, 537
BstV2I GAAGAC 2 cut(s) 55, 98
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 2 cut(s) 416, 479
BsuTUI ATCGAT 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 2 cut(s) 457, 498
BtsIMutI CAGTG 2 cut(s) 457, 498
Cac8I GCNNGC 3 cut(s) 219, 354, 434
CaiI CAGNNNCTG 1 cut(s) 250
CciI TCATGA 1 cut(s) 498
CfoI GCGC 2 cut(s) 521, 537
Cfr13I GGNCC 2 cut(s) 415, 477
ClaI ATCGAT 1 cut(s) 137
CseI GACGC 1 cut(s) 526
Csp6I GTAC 1 cut(s) 70
CviAII CATG 7 cut(s) 58, 149, 181, 214, 310, 433, 499
CviJI RGCY 4 cut(s) 194, 356, 416, 479
CviKI_1 RGCY 4 cut(s) 194, 356, 416, 479
CviQI GTAC 1 cut(s) 70
DpnI GATC 3 cut(s) 123, 136, 140
DpnII GATC 3 cut(s) 121, 134, 138
DraI TTTAAA 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 7 cut(s) 61, 152, 184, 217, 313, 436, 502
FatI CATG 7 cut(s) 57, 148, 180, 213, 309, 432, 498
FokI GGATG 1 cut(s) 255
FspI TGCGCA 1 cut(s) 520
GlaI GCGC 2 cut(s) 520, 536
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 416, 479
HgaI GACGC 1 cut(s) 526
HhaI GCGC 2 cut(s) 521, 537
Hin1II CATG 7 cut(s) 61, 152, 184, 217, 313, 436, 502
Hin6I GCGC 2 cut(s) 519, 535
HinP1I GCGC 2 cut(s) 519, 535
HinfI GANTC 1 cut(s) 485
HphI GGTGA 4 cut(s) 40, 164, 307, 386
Hpy166II GTNNAC 2 cut(s) 285, 445
Hpy188I TCNGA 2 cut(s) 246, 387
Hpy188III TCNNGA 4 cut(s) 200, 208, 499, 508
Hpy8I GTNNAC 2 cut(s) 285, 445
HpyCH4III ACNGT 2 cut(s) 106, 252
HpyCH4V TGCA 6 cut(s) 48, 161, 268, 367, 445, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 442
Hsp92II CATG 7 cut(s) 61, 152, 184, 217, 313, 436, 502
HspAI GCGC 2 cut(s) 519, 535
Kzo9I GATC 3 cut(s) 121, 134, 138
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 66, 93, 110, 213, 235, 272, 319, 366, 455
LweI GCATC 4 cut(s) 255, 277, 339, 354
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 123, 136, 140
MboI GATC 3 cut(s) 121, 134, 138
MboII GAAGA 3 cut(s) 55, 103, 573
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 20, 464, 502, 511
MnlI CCTC 8 cut(s) 19, 86, 178, 207, 283, 339, 393, 416
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 465
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 2 cut(s) 132, 537
MwoI GCNNNNNNNGC 2 cut(s) 227, 442
NcoI CCATGG 1 cut(s) 148
NdeII GATC 3 cut(s) 121, 134, 138
NlaIII CATG 7 cut(s) 61, 152, 184, 217, 313, 436, 502
NlaIV GGNNCC 2 cut(s) 257, 417
NmuCI GTSAC 1 cut(s) 28
NsbI TGCGCA 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 2 cut(s) 217, 436
OliI CACNNNNGTG 1 cut(s) 450
PaeI GCATGC 1 cut(s) 436
PagI TCATGA 1 cut(s) 498
PctI GAATGC 1 cut(s) 465
PfeI GAWTC 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 257, 417
PspPI GGNCC 2 cut(s) 415, 477
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 3 cut(s) 121, 134, 138
Sau96I GGNCC 2 cut(s) 415, 477
ScaI AGTACT 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 447
SetI ASST 4 cut(s) 30, 196, 444, 556
SfaNI GCATC 4 cut(s) 255, 277, 339, 354
SmiMI CAYNNNNRTG 1 cut(s) 450
SphI GCATGC 1 cut(s) 436
Sse9I AATT 4 cut(s) 20, 464, 502, 511
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 106, 252
TaqI TCGA 3 cut(s) 137, 209, 275
TasI AATT 4 cut(s) 20, 464, 502, 511
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 457, 498
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 326, 487, 515
TspRI CASTG 2 cut(s) 457, 498
VneI GTGCAC 1 cut(s) 443
XapI RAATTY 1 cut(s) 502
XceI RCATGY 2 cut(s) 217, 436
ZrmI AGTACT 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.