Rh4DG278600

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000251
Physical Location & Seq
Reverse (-)
49891523 .. 49894110
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG278600.1

Sequence Viewer

Length: 2292 bp
ATGGCTGCAAAGAAAGTTATAGCAATATGTCAATCCGGAGGGGACTTCGTGACGGATAAGGATGGGAGTTTATCGTACAGTGGCGGAGACGCGTATGCAGTTGACATTGATCAGCAAACTCTGCTGAGTGATTTCAAGTCTGAAATAGCGGAGATGTTTAGCTGTAGTGCTGATACAATGTCGCTCAAGTATTTCCTTCCGGGCAATAAGAAGACGCTCATTACAATCTCTAAAGATAAGGACCTGCAGCGGATGGTCAATTTCCTGGGGGATTCGGTCAGTGTGGATGTCTTTGTCATCTCGGAGGAAACTGCTGCTCGAAATACATCCAACATGCCTGCTAGTAGGTCAAGCCGGACAACTGTATCTGAAGCAGTAGTTCCTGTTGCTGAGCAGCTTGGCCTTGTTGATGTGCCAGTTGATACTAGCATTGCCATTGATCAAATTGATACAAAACCTCCACATGAAATTCCTTTGTGTTCTGTTTTCCCAAGTTCTTCTCATGATGATAAGCATCATAAAGCTGCACAACAGTGGGAAAACACCATCACCGGAGTGGACCAACGGTTTAATAGTTTCAGTGAATTCAGAGAAGCATTGCATAAGTATTCAATTGCGCATGGGTTTGCTTATAGATATAAGAAAAATGACAGTCATCGAGTCACAGTGAAATGCAAATCCCAAGGTTGCCCATGGAGGATATATGCATCAAGGTTGGCCACTACACAGTTAATTTGTATCAAGAAAATGAACACAGATCATACATGTGAAGGGGCTGCAGTAAAAGCTGGGTATCGGGCAACTAGAGGTTGGGTGGGAAGTATCATAAAGGAGAAATTGAAAGTTTCCCCAAACTACAAGCCAAAGGATATAGCAGATGACATCAAGCGAGAGTATGGCATTCAGTTGAACTACTCTCAGGCATGGCGAGCGAAAGAGATTGCGAGGGAGCAGCTCCAAGGTTCCTATAAAGAGGCCTATAATCAGTTGCCTTATTTTTGTGAGAAGATAAAGGAAACTAATCCAGGGAGTGTTGCTACATTTGCCACTAAGGAGGACTCGAGCTTCCATCGCTTCTTTGTATCTTTCCATGCATCAATTTCAGGTTTCCAACAAGGTTGCCGCCCTCTCCTTTTCCTTGATAGCACTCCTTTGAACTCTAAATATCAAGGAGATTTGTTGTCTGCAACAGCTGCAGATGGTGATGATGGTATCTTTCCTGTAGCATTTGCTGTCGTGGATGCTGAGACTAGTGAAAACTGGCATTGGTTCTTATTAGAACTGAAATCTGCAGTGTCAACATCTCAGTCAATTACATTTGTTGCAGATTTTCAGAATGGTTTGAAAGAGTCATTGGCTGAGGTATTTGATAAATGCTACCACTGCTTTTGTTTGAGGCATCTTGCTGAGAAACTTAACAAGGACTTGAAGGGGCAATTTTCTCATGAGGCAAGACGGTTTTTAATTAATGATTTTTATTCTGCTGCTTATGCACCTAAACTGGAGGATTTCCAGCGTAGTGCTGGGAACATAAAAAGTATTTCACCTGATGCGTACGACTGGGTTGTACAAAGTGGACCAGAGCACTGGGCTAATGCATTCTCTTTAGGAGCCAGGTACAACCACATGACTTCAAACTTTGGACAGCAATTCTATAGTTGGGTATCAGAGGCGCATGAGTTACCGATTACACAGATGATTGATGTGTTACGAGGTAAGATGATGGAAACCATATATTCTCGGAGGGTGGAGTCCAACCAATGGGTGACAAGATTAACACCATCTAAGGAGGAAAAGCTTCAACAAGAAATGGAATCTGCTCGATCACTTCAAGTGTTACTCTCACACGGTAGCACATTTGAGGTTCGTGGAGACTCTGTTGATACTGTTGACATCGACCATTGGAATTGTTCCTGTAAGGGATGGCAACTTACTGGTCTGCCTTGTTGCCATGCTATTGCTGTCTTTGAATGCATTGGTAGGAGCTCATATGATTACTGCTCCAGATACTTCACCCTCGAGAGTTACCGTTTAACATATGCAGAATCAATCAACCCTGTTCCGAACGTAGACAGACCACTAGCAATCCCAGGCGGTGAATCAAGCCAGGCAGTAGCAGGAGTTACCGTTACCCCTCCACCTACCAAACGGCCGCCAGGGCGGCCAAAGCTGAAGTCAGCCGAAACAATAGACATAATAAAACGCCAGCTCCAGTGCAGCAAGTGCAAGGGCCTTGGCCACAATAAGAAGACATGTAAAGATCCTAATGTTATTTTAGAACTTCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

763

Amino Acids

85.35

Weight (kDa)

6.87

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 21 - 90 4.5e-07 PB1 domain
DBD_Tnp_Mut PF03108 182 - 247 1.7e-25 MuDR family transposase
MULE PF10551 378 - 470 1.2e-15 MULE transposase domain
SWIM PF04434 629 - 659 6.3e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 1761
AccI GTMKAC 1 cut(s) 2070
AccII CGCG 1 cut(s) 92
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 7 cut(s) 84, 149, 250, 1123, 2094, 2153, 2161
AclWI GGATC 1 cut(s) 2255
AcoI YGGCCR 4 cut(s) 717, 2150, 2162, 2236
AcsI RAATTY 2 cut(s) 468, 584
AcuI CTGAAG 2 cut(s) 390, 2192
AfaI GTAC 4 cut(s) 77, 1556, 1569, 1619
AfiI CCNNNNNNNGG 1 cut(s) 1761
AflIII ACRYGT 3 cut(s) 90, 764, 2252
AhlI ACTAGT 1 cut(s) 1250
AjnI CCWGG 6 cut(s) 264, 1024, 1613, 2089, 2106, 2155
AjuI GAANNNNNNNTTGG 2 cut(s) 1337, 1369
AleI CACNNNNGTG 2 cut(s) 532, 554
Alw21I GWGCWC 2 cut(s) 1587, 1988
Alw26I GTCTC 3 cut(s) 81, 1241, 1866
AlwI GGATC 1 cut(s) 2255
Ama87I CYCGRG 2 cut(s) 1060, 2018
Aor13HI TCCGGA 1 cut(s) 35
AoxI GGCC 7 cut(s) 400, 717, 975, 2150, 2162, 2230, 2236
ApoI RAATTY 2 cut(s) 468, 584
ArsI GACNNNNNNTTYG 2 cut(s) 2159, 2191
AseI ATTAAT 1 cut(s) 1467
Asp700I GAANNNNTTC 1 cut(s) 1797
AspLEI GCGC 2 cut(s) 619, 1675
AspS9I GGNCC 4 cut(s) 241, 559, 1577, 2230
AsuC2I CCSGG 2 cut(s) 201, 2286
AsuHPI GGTGA 6 cut(s) 541, 1214, 1536, 1777, 2005, 2108
AvaI CYCGRG 2 cut(s) 1060, 2018
AvaII GGWCC 3 cut(s) 241, 559, 1577
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BalI TGGCCA 2 cut(s) 719, 2238
BanII GRGCYC 1 cut(s) 1988
BbsI GAAGAC 2 cut(s) 218, 2255
Bbv12I GWGCWC 2 cut(s) 1587, 1988
BbvCI CCTCAGC 1 cut(s) 1359
BbvI GCAGC 9 cut(s) 259, 301, 406, 511, 763, 964, 1180, 1471, 2229
BccI CCATC 9 cut(s) 56, 247, 554, 1077, 1193, 1202, 1717, 1789, 1917
BceAI ACGGC 1 cut(s) 2165
BciT130I CCWGG 6 cut(s) 266, 1026, 1615, 2091, 2108, 2157
BclI TGATCA 2 cut(s) 109, 439
BcnI CCSGG 2 cut(s) 201, 2286
BcoDI GTCTC 3 cut(s) 81, 1241, 1866
BcuI ACTAGT 1 cut(s) 1250
BfaI CTAG 5 cut(s) 342, 426, 804, 1251, 2081
BfmI CTRYAG 7 cut(s) 163, 245, 777, 1194, 1221, 1290, 1654
BfuAI ACCTGC 1 cut(s) 252
BglI GCCNNNNNGGC 2 cut(s) 2158, 2161
BlpI GCTNAGC 1 cut(s) 390
Bme1390I CCNGG 8 cut(s) 201, 266, 1026, 1615, 2091, 2108, 2157, 2286
Bme18I GGWCC 3 cut(s) 241, 559, 1577
BmeT110I CYCGRG 2 cut(s) 1060, 2018
BmgT120I GGNCC 4 cut(s) 241, 559, 1577, 2230
BmiI GGNNCC 2 cut(s) 964, 1612
BmrFI CCNGG 8 cut(s) 201, 266, 1026, 1615, 2091, 2108, 2157, 2286
BmrI ACTGGG 2 cut(s) 1570, 1597
BmsI GCATC 6 cut(s) 523, 716, 1103, 1231, 1408, 1540
BmuI ACTGGG 2 cut(s) 1570, 1597
BpiI GAAGAC 2 cut(s) 218, 2255
BpmI CTGGAG 3 cut(s) 1523, 1987, 2195
Bpu10I CCTNAGC 1 cut(s) 1359
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 201, 2286
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 9 cut(s) 265, 682, 692, 958, 1025, 2089, 2156, 2233, 2285
BsaWI WCCGGW 2 cut(s) 35, 551
BsaXI ACNNNNNCTCC 8 cut(s) 442, 472, 1863, 1893, 2112, 2142, 2193, 2223
Bsc4I CCNNNNNNNGG 1 cut(s) 1761
Bse1I ACTGG 7 cut(s) 416, 1265, 1506, 1565, 1592, 1939, 2212
Bse3DI GCAATG 2 cut(s) 429, 596
Bse8I GATNNNNATC 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 6 cut(s) 266, 1026, 1615, 2091, 2108, 2157
BseDI CCNNGG 9 cut(s) 265, 682, 692, 958, 1025, 2089, 2156, 2233, 2285
BseGI GGATG 6 cut(s) 67, 258, 292, 326, 1246, 1928
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 1761
BseMI GCAATG 2 cut(s) 429, 596
BseMII CTCAG 7 cut(s) 116, 381, 932, 1236, 1319, 1350, 1398
BseNI ACTGG 7 cut(s) 416, 1265, 1506, 1565, 1592, 1939, 2212
BseX3I CGGCCG 1 cut(s) 2150
BseXI GCAGC 9 cut(s) 259, 301, 406, 511, 763, 964, 1180, 1471, 2229
BseYI CCCAGC 2 cut(s) 788, 1523
BsgI GTGCAG 2 cut(s) 510, 2236
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 2153
BshFI GGCC 7 cut(s) 402, 719, 977, 2152, 2164, 2232, 2238
BsiEI CGRYCG 1 cut(s) 2153
BsiHKAI GWGCWC 2 cut(s) 1587, 1988
BsiHKCI CYCGRG 2 cut(s) 1060, 2018
BsiSI CCGG 5 cut(s) 36, 200, 355, 552, 2285
BsiWI CGTACG 1 cut(s) 1554
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 1761
BsmAI GTCTC 3 cut(s) 81, 1241, 1866
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 3 cut(s) 900, 1598, 1976
BsnI GGCC 7 cut(s) 402, 719, 977, 2152, 2164, 2232, 2238
BsoBI CYCGRG 2 cut(s) 1060, 2018
Bsp1286I GDGCHC 2 cut(s) 1587, 1988
Bsp13I TCCGGA 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 1567
Bsp143I GATC 5 cut(s) 109, 439, 757, 1823, 2260
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 692
BspACI CCGC 7 cut(s) 84, 149, 250, 1123, 2094, 2153, 2161
BspANI GGCC 7 cut(s) 402, 719, 977, 2152, 2164, 2232, 2238
BspCNI CTCAG 7 cut(s) 117, 382, 931, 1237, 1318, 1351, 1399
BspEI TCCGGA 1 cut(s) 35
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 2 cut(s) 502, 1444
BspLI GGNNCC 2 cut(s) 964, 1612
BspMAI CTGCAG 4 cut(s) 249, 781, 1198, 1294
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 2255
BsrDI GCAATG 2 cut(s) 429, 596
BsrGI TGTACA 1 cut(s) 1567
BsrI ACTGG 7 cut(s) 416, 1265, 1506, 1565, 1592, 1939, 2212
BssECI CCNNGG 9 cut(s) 265, 682, 692, 958, 1025, 2089, 2156, 2233, 2285
BssMI GATC 5 cut(s) 109, 439, 757, 1823, 2260
BssT1I CCWWGG 4 cut(s) 682, 692, 958, 2233
Bst2UI CCWGG 6 cut(s) 266, 1026, 1615, 2091, 2108, 2157
BstAPI GCANNNNNTGC 3 cut(s) 121, 1193, 2223
BstAUI TGTACA 1 cut(s) 1567
BstC8I GCNNGC 3 cut(s) 339, 930, 2207
BstDEI CTNAG 9 cut(s) 125, 390, 918, 1050, 1245, 1305, 1359, 1407, 1785
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 6 cut(s) 67, 258, 292, 326, 1246, 1928
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 2 cut(s) 619, 1675
BstKTI GATC 5 cut(s) 112, 442, 760, 1826, 2263
BstMAI GTCTC 3 cut(s) 81, 1241, 1866
BstMBI GATC 5 cut(s) 109, 439, 757, 1823, 2260
BstMCI CGRYCG 1 cut(s) 2153
BstNI CCWGG 6 cut(s) 266, 1026, 1615, 2091, 2108, 2157
BstNSI RCATGY 3 cut(s) 337, 768, 2256
BstSCI CCNGG 8 cut(s) 199, 264, 1024, 1613, 2089, 2106, 2155, 2284
BstSFI CTRYAG 7 cut(s) 163, 245, 777, 1194, 1221, 1290, 1654
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 9 cut(s) 259, 301, 406, 511, 763, 964, 1180, 1471, 2229
BstV2I GAAGAC 2 cut(s) 218, 2255
BstX2I RGATCY 1 cut(s) 2260
BstXI CCANNNNNNTGG 1 cut(s) 1587
BstYI RGATCY 1 cut(s) 2260
BstZI CGGCCG 1 cut(s) 2150
BsuRI GGCC 7 cut(s) 402, 719, 977, 2152, 2164, 2232, 2238
BtgI CCRYGG 1 cut(s) 692
BtgZI GCGATG 1 cut(s) 1055
BtsCI GGATG 6 cut(s) 67, 258, 292, 326, 1246, 1928
BtsI GCAGTG 2 cut(s) 1299, 1381
BtsIMutI CAGTG 9 cut(s) 85, 286, 539, 586, 672, 1299, 1381, 1585, 2219
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 3 cut(s) 339, 930, 2207
CciI TCATGA 2 cut(s) 502, 1444
CfoI GCGC 2 cut(s) 619, 1675
Cfr13I GGNCC 4 cut(s) 241, 559, 1577, 2230
CseI GACGC 2 cut(s) 98, 223
Csp6I GTAC 4 cut(s) 76, 1555, 1568, 1618
CspCI CAANNNNNGTGG 2 cut(s) 1370, 1405
CviQI GTAC 4 cut(s) 76, 1555, 1568, 1618
DdeI CTNAG 9 cut(s) 125, 390, 918, 1050, 1245, 1305, 1359, 1407, 1785
DpnI GATC 5 cut(s) 111, 441, 759, 1825, 2262
DpnII GATC 5 cut(s) 109, 439, 757, 1823, 2260
EaeI YGGCCR 4 cut(s) 717, 2150, 2162, 2236
EagI CGGCCG 1 cut(s) 2150
EciI GGCGGA 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 1986
EclXI CGGCCG 1 cut(s) 2150
Eco130I CCWWGG 4 cut(s) 682, 692, 958, 2233
Eco147I AGGCCT 1 cut(s) 977
Eco24I GRGCYC 1 cut(s) 1988
Eco47I GGWCC 3 cut(s) 241, 559, 1577
Eco52I CGGCCG 1 cut(s) 2150
Eco53kI GAGCTC 1 cut(s) 1986
Eco57I CTGAAG 2 cut(s) 390, 2192
Eco88I CYCGRG 2 cut(s) 1060, 2018
EcoICRI GAGCTC 1 cut(s) 1986
EcoO109I RGGNCCY 2 cut(s) 241, 2230
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 6 cut(s) 264, 1024, 1613, 2089, 2106, 2155
EcoT14I CCWWGG 4 cut(s) 682, 692, 958, 2233
EcoT22I ATGCAT 4 cut(s) 709, 1096, 1600, 1976
EcoT38I GRGCYC 1 cut(s) 1988
ErhI CCWWGG 4 cut(s) 682, 692, 958, 2233
Esp3I CGTCTC 1 cut(s) 81
FaqI GGGAC 1 cut(s) 56
FauNDI CATATG 2 cut(s) 1990, 2038
FbaI TGATCA 2 cut(s) 109, 439
FblI GTMKAC 1 cut(s) 2070
FokI GGATG 6 cut(s) 74, 265, 299, 313, 1253, 1935
FriOI GRGCYC 1 cut(s) 1988
FspBI CTAG 5 cut(s) 342, 426, 804, 1251, 2081
FspI TGCGCA 1 cut(s) 618
GlaI GCGC 2 cut(s) 618, 1674
GsaI CCCAGC 2 cut(s) 792, 1527
GsuI CTGGAG 3 cut(s) 1523, 1987, 2195
HaeIII GGCC 7 cut(s) 402, 719, 977, 2152, 2164, 2232, 2238
HapII CCGG 5 cut(s) 36, 200, 355, 552, 2285
HgaI GACGC 2 cut(s) 98, 223
HhaI GCGC 2 cut(s) 619, 1675
Hin6I GCGC 2 cut(s) 617, 1673
HinP1I GCGC 2 cut(s) 617, 1673
HincII GTYRAC 3 cut(s) 103, 1299, 1891
HindII GTYRAC 3 cut(s) 103, 1299, 1891
HindIII AAGCTT 1 cut(s) 1796
HinfI GANTC 9 cut(s) 272, 660, 1058, 1349, 1751, 1814, 1874, 2045, 2099
HpaII CCGG 5 cut(s) 36, 200, 355, 552, 2285
HphI GGTGA 6 cut(s) 541, 1214, 1536, 1777, 2005, 2108
Hpy166II GTNNAC 6 cut(s) 103, 559, 1299, 1577, 1891, 2071
Hpy188I TCNGA 8 cut(s) 142, 304, 370, 590, 1335, 1669, 1743, 2064
Hpy188III TCNNGA 7 cut(s) 36, 49, 503, 742, 1445, 2004, 2020
Hpy8I GTNNAC 6 cut(s) 103, 559, 1299, 1577, 1891, 2071
HpyAV CCTTC 3 cut(s) 206, 764, 1423
HpyCH4IV ACGT 1 cut(s) 2067
HpyF3I CTNAG 9 cut(s) 125, 390, 918, 1050, 1245, 1305, 1359, 1407, 1785
HpySE526I ACGT 1 cut(s) 2067
HspAI GCGC 2 cut(s) 617, 1673
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 109, 439
Kzo9I GATC 5 cut(s) 109, 439, 757, 1823, 2260
LmnI GCTCC 6 cut(s) 949, 960, 1610, 1983, 2006, 2214
Lsp1109I GCAGC 9 cut(s) 259, 301, 406, 511, 763, 964, 1180, 1471, 2229
LweI GCATC 6 cut(s) 523, 716, 1103, 1231, 1408, 1540
MaeI CTAG 5 cut(s) 342, 426, 804, 1251, 2081
MaeII ACGT 1 cut(s) 2067
MaeIII GTNAC 9 cut(s) 49, 661, 1680, 1707, 1765, 1836, 2024, 2122, 2128
MalI GATC 5 cut(s) 111, 441, 759, 1825, 2262
MboI GATC 5 cut(s) 109, 439, 757, 1823, 2260
MboII GAAGA 4 cut(s) 223, 489, 1018, 2260
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 2260
MhlI GDGCHC 2 cut(s) 1587, 1988
MlsI TGGCCA 2 cut(s) 719, 2238
MluI ACGCGT 1 cut(s) 90
MluNI TGGCCA 2 cut(s) 719, 2238
MlyI GAGTC 5 cut(s) 669, 1052, 1358, 1760, 1868
MmeI TCCRAC 3 cut(s) 354, 1135, 1779
Mox20I TGGCCA 2 cut(s) 719, 2238
Mph1103I ATGCAT 4 cut(s) 709, 1096, 1600, 1976
MroI TCCGGA 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 1797
MscI TGGCCA 2 cut(s) 719, 2238
MseI TTAA 7 cut(s) 570, 731, 1416, 1463, 1467, 1775, 2033
MslI CAYNNNNRTG 3 cut(s) 532, 554, 765
Msp20I TGGCCA 2 cut(s) 719, 2238
MspA1I CMGCKG 2 cut(s) 250, 1193
MspI CCGG 5 cut(s) 36, 200, 355, 552, 2285
MspR9I CCNGG 8 cut(s) 201, 266, 1026, 1615, 2091, 2108, 2157, 2286
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 3 cut(s) 900, 1598, 1976
MvaI CCWGG 6 cut(s) 266, 1026, 1615, 2091, 2108, 2157
MvnI CGCG 1 cut(s) 92
NciI CCSGG 2 cut(s) 201, 2286
NcoI CCATGG 1 cut(s) 692
NdeI CATATG 2 cut(s) 1990, 2038
NdeII GATC 5 cut(s) 109, 439, 757, 1823, 2260
NlaIV GGNNCC 2 cut(s) 964, 1612
NmuCI GTSAC 3 cut(s) 49, 661, 1765
NsbI TGCGCA 1 cut(s) 618
NsiI ATGCAT 4 cut(s) 709, 1096, 1600, 1976
NspI RCATGY 3 cut(s) 337, 768, 2256
OliI CACNNNNGTG 2 cut(s) 532, 554
PacI TTAATTAA 1 cut(s) 1467
PaeR7I CTCGAG 2 cut(s) 1060, 2018
PagI TCATGA 2 cut(s) 502, 1444
PceI AGGCCT 1 cut(s) 977
PciI ACATGT 2 cut(s) 764, 2252
PctI GAATGC 3 cut(s) 900, 1598, 1976
PdmI GAANNNNTTC 1 cut(s) 1797
PfeI GAWTC 4 cut(s) 272, 1814, 2045, 2099
Pfl23II CGTACG 1 cut(s) 1554
PflMI CCANNNNNTGG 1 cut(s) 1761
PleI GAGTC 5 cut(s) 668, 1052, 1357, 1759, 1868
PpsI GAGTC 5 cut(s) 668, 1052, 1357, 1759, 1868
PpuMI RGGWCCY 1 cut(s) 241
PscI ACATGT 2 cut(s) 764, 2252
PshBI ATTAAT 1 cut(s) 1467
Psp124BI GAGCTC 1 cut(s) 1988
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 6 cut(s) 264, 1024, 1613, 2089, 2106, 2155
PspFI CCCAGC 2 cut(s) 788, 1523
PspGI CCWGG 6 cut(s) 264, 1024, 1613, 2089, 2106, 2155
PspLI CGTACG 1 cut(s) 1554
PspN4I GGNNCC 2 cut(s) 964, 1612
PspPI GGNCC 4 cut(s) 241, 559, 1577, 2230
PspPPI RGGWCCY 1 cut(s) 241
PspXI VCTCGAGB 1 cut(s) 1060
PstI CTGCAG 4 cut(s) 249, 781, 1198, 1294
PsuI RGATCY 1 cut(s) 2260
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 4 cut(s) 77, 1556, 1569, 1619
RsaNI GTAC 4 cut(s) 76, 1555, 1568, 1618
RseI CAYNNNNRTG 3 cut(s) 532, 554, 765
SacI GAGCTC 1 cut(s) 1988
SaqAI TTAA 7 cut(s) 570, 731, 1416, 1463, 1467, 1775, 2033
Sau3AI GATC 5 cut(s) 109, 439, 757, 1823, 2260
Sau96I GGNCC 4 cut(s) 241, 559, 1577, 2230
SchI GAGTC 5 cut(s) 669, 1052, 1358, 1760, 1868
ScrFI CCNGG 8 cut(s) 201, 266, 1026, 1615, 2091, 2108, 2157, 2286
SduI GDGCHC 2 cut(s) 1587, 1988
SfaNI GCATC 6 cut(s) 523, 716, 1103, 1231, 1408, 1540
SfcI CTRYAG 7 cut(s) 163, 245, 777, 1194, 1221, 1290, 1654
Sfr274I CTCGAG 2 cut(s) 1060, 2018
SinI GGWCC 3 cut(s) 241, 559, 1577
SlaI CTCGAG 2 cut(s) 1060, 2018
SmiMI CAYNNNNRTG 3 cut(s) 532, 554, 765
SmlI CTYRAG 3 cut(s) 185, 1060, 2018
SmoI CTYRAG 3 cut(s) 185, 1060, 2018
SpeI ACTAGT 1 cut(s) 1250
SseBI AGGCCT 1 cut(s) 977
SsiI CCGC 7 cut(s) 84, 149, 250, 1123, 2094, 2153, 2161
SspMI CTAG 5 cut(s) 342, 426, 804, 1251, 2081
SstI GAGCTC 1 cut(s) 1988
StuI AGGCCT 1 cut(s) 977
StyD4I CCNGG 8 cut(s) 199, 264, 1024, 1613, 2089, 2106, 2155, 2284
StyI CCWWGG 4 cut(s) 682, 692, 958, 2233
TaiI ACGT 1 cut(s) 2070
TaqI TCGA 6 cut(s) 319, 658, 1061, 1822, 1896, 2019
TaqII GACCGA 1 cut(s) 265
TatI WGTACW 1 cut(s) 1567
TauI GCSGC 3 cut(s) 1125, 2155, 2164
TfiI GAWTC 4 cut(s) 272, 1814, 2045, 2099
Tru1I TTAA 7 cut(s) 570, 731, 1416, 1463, 1467, 1775, 2033
Tru9I TTAA 7 cut(s) 570, 731, 1416, 1463, 1467, 1775, 2033
TscAI CASTG 9 cut(s) 85, 286, 539, 586, 672, 1299, 1388, 1592, 2219
TseFI GTSAC 3 cut(s) 49, 661, 1765
Tsp45I GTSAC 3 cut(s) 49, 661, 1765
TspDTI ATGAA 2 cut(s) 480, 764
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 9 cut(s) 85, 286, 539, 586, 672, 1299, 1388, 1592, 2219
Van91I CCANNNNNTGG 1 cut(s) 1761
VpaK11BI GGWCC 3 cut(s) 241, 559, 1577
VspI ATTAAT 1 cut(s) 1467
XapI RAATTY 2 cut(s) 468, 584
XceI RCATGY 3 cut(s) 337, 768, 2256
XcmI CCANNNNNNNNNTGG 2 cut(s) 553, 1520
XhoI CTCGAG 2 cut(s) 1060, 2018
XmiI GTMKAC 1 cut(s) 2070
XmnI GAANNNNTTC 1 cut(s) 1797
XspI CTAG 5 cut(s) 342, 426, 804, 1251, 2081
Zsp2I ATGCAT 4 cut(s) 709, 1096, 1600, 1976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.