FvH4_4g21561

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000251
Physical Location & Seq
Reverse (-)
24591668 .. 24594268
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21561.t1

Sequence Viewer

Length: 2289 bp
ATGGCTGCAAAGAAGGTTATAGCAATATGTCAGTCTGGAGGAGACTTTGTGACGGATAAGGATGGGAGCTTATCGTACAGTGGCGGAGACGCGTATGCGGTTGACATTGATCAGCAAACGCTGCTGAGTGATTTTAAGTCGGAGATAGCGGAGATGTTTAGCTGTAATGCTGATACAATGTCGCTCAAGTATTTCCTTCCAGGAAATAAGAGGACTCTGATTACGATTTCTAAAGACAAGGACTTGCAGCGGATGGTCAATTTCCTGGGGGATTCGGTCAATGTTGATGTTTTTGTGATATCGGAGGAAACTGCTGCTCGAAATACATCCAACATGCCTGCTAGTAGGTCAAGCAGGACAACTGTGTCAGAAGCAGTAGTTCCTGTTGCCGAGCAGCTTGGAATTGTTGATGTGCCGGTTGATACTAGCATTGCCATTGATCAAATGGATACAAAACCACCCCATGAGATACCTATGTGTTCTTTTCCCAGTTCTTCCCATGATGAAAAGCATCAAAAAGCTGCACAACAGTGGGAAAACACCATCACTGGAGTGGACCAACGATTTAATAGTTTCAGTGAATTCAGAGAAGCGTTGCATAAGTATTCAATTGCACATGGGTTCGCTTATAGATATAAGAAGAATGACAGTCATCGTGTCACTGTGAAATGCAAATCCCAAGGTTGCCCATGGAGGATATATGCATCAAGGTTGGCCACTACACAGTTAATTTGTATCAAGAAAATGAACACTGATCATACATGTGAAGGGGCCGCTGTGAAAGCTGGATATCGGGCAACTAGAGGTTGGGTGGGAAGTATCATAAAGGAGAAATTAAAAGTTTCCCCAAACTACAAGCCAAAGGATATAGCTGATGACATCAAGCGAGAATATGGCATTCAGTTGAACTATTCTCAGGCATGGCGTGCGAAAGAGATTGCGAGGGAACAGCTTCAAGGTTCCTATAAAGAGGCCTATAATCAGTTGCCGTATTTTTGTGAGAAGATAAAGGAAACTAATCCAGGGAGTGTTGCTACATTTGCCACTAAGGAGGACTCAAGCTTCCATCGCTTCTTTGTATCTTTCCATGCATCAATATCCGGTTTCCAACAAGGTTGCCGCCCTCTCCTTTTCCTTGATAGCACTCCCTTGAACTCAAAATATCAAGGGGATTTGTTGTCAGCAACAGCTGCAGATGGTGATGATGGTATCTTTCCTGTAGCATTTGCTGTCGTGGATGCTGAGACTAGTGAAAACTGGCATTGGTTCTTATTAGAACTTAAATCTGCAGTGTCATCATCTCAGCCGATTACATTTGTTGCAGATTTTCAGAATGGTTTGAAAGAGTCATTGGCGGAGGTATTTGATAAATGCTACCACTGCTTTTGTTTGAGGCATCTTGCTGAGAAACTGAACAAGGACGTGAAGGGGCAATTTTCTCACGAGGCAAGACGGTTTTTGATTAATGATTTTTATTCTGCTGCTTATGCACCTAAACTGGAGGATTTCCAGCGTAGTGCTGCAAATATTAAAAGTATTTCACCTGATGCATACAATTGGGTTGTACAAAGTGGCCCAGAGCACTGGGCTAATGCGTTCAATTTAGGCACCAGGTACAACCACATGACTTCAAACTTTGGACAGCAGTTCTATAGTTGGGTCTCAGAAGCACATGAGTTACCAATTACACAGATGATTGATGTGTTACGAGGTAAGATGATGGAAACAATCTATTCGAGAAGGGTAGAGTCCAACCAATGGGTGACAAGATTAACACCATCGAAGGAAGAAAAGCTTCAACTAGAAATGGAAACTGCTAGATCACTTCAAGTGTTACTCTCACACGGTAGCACATTTGAGGTTCGTGGAGACTCTGTTGATACCGTTGATATCGACCATTGGAATTGTTCCTGTAAGGGATGGCAACTTACTGGTCTGCCTTGCTGCCATGCCATTGCAGTATTTGAATGCATTGGTAGGAACTCATATGATTACTGCTCCAGATACTTCACAGTTGAGAGTTACCGTTTAACATATGCAGAATCAATTAATCCTGTTCCGAATGTAGACAGGCCTCTAGCAATCCCAGGTTCTGAATCAAGCAAGGCAGTGGCAGGGGTTACCGTTACCCCACCACCAACCAAACGGCCGCCAGGGCGGCCGAAGCTGAAGTCAGCCGAAACAATAGACATAATAAAACGCCAGCTCCAGTGCAGCAAGTGCAAGGGCCTTGGCCACAATAAGAAGACATGTAAAGACCCTAGTGTTATCTTAGAACTTCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

763

Amino Acids

85.45

Weight (kDa)

7.24

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 21 - 89 2e-06 PB1 domain
DBD_Tnp_Mut PF03108 181 - 246 1.7e-25 MuDR family transposase
MULE PF10551 377 - 469 2.6e-16 MULE transposase domain
SWIM PF04434 628 - 658 6.3e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 1607
AccB7I CCANNNNNTGG 1 cut(s) 1758
AccI GTMKAC 1 cut(s) 2067
AccII CGCG 1 cut(s) 92
AciI CCGC 9 cut(s) 84, 98, 149, 250, 774, 1120, 1355, 2150, 2158
AcoI YGGCCR 4 cut(s) 714, 2147, 2159, 2233
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 2189
AfaI GTAC 3 cut(s) 77, 1566, 1616
AfiI CCNNNNNNNGG 1 cut(s) 1758
AflIII ACRYGT 3 cut(s) 90, 761, 2249
AhlI ACTAGT 1 cut(s) 1247
AjiI CACGTC 1 cut(s) 1423
AjnI CCWGG 6 cut(s) 199, 264, 1021, 1610, 2086, 2152
AjuI GAANNNNNNNTTGG 2 cut(s) 1334, 1366
AleI CACNNNNGTG 2 cut(s) 529, 551
Alw21I GWGCWC 1 cut(s) 1584
Alw26I GTCTC 5 cut(s) 36, 81, 1238, 1666, 1863
AlwNI CAGNNNCTG 1 cut(s) 2093
AoxI GGCC 9 cut(s) 714, 771, 972, 1573, 2072, 2147, 2159, 2227, 2233
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 2156, 2188
AseI ATTAAT 2 cut(s) 1464, 2049
Asp700I GAANNNNTTC 2 cut(s) 951, 1794
AspS9I GGNCC 4 cut(s) 556, 771, 1574, 2227
AsuC2I CCSGG 1 cut(s) 2283
AsuHPI GGTGA 3 cut(s) 1211, 1533, 1774
AvaII GGWCC 1 cut(s) 556
BaeI ACNNNNGTAYC 2 cut(s) 461, 494
BalI TGGCCA 2 cut(s) 716, 2235
BanI GGYRCC 1 cut(s) 1607
BauI CACGAG 1 cut(s) 1442
BbsI GAAGAC 1 cut(s) 2252
Bbv12I GWGCWC 1 cut(s) 1584
BccI CCATC 9 cut(s) 56, 247, 551, 1074, 1190, 1199, 1714, 1786, 1914
BceAI ACGGC 2 cut(s) 973, 2162
BciT130I CCWGG 6 cut(s) 201, 266, 1023, 1612, 2088, 2154
BciVI GTATCC 1 cut(s) 442
BclI TGATCA 3 cut(s) 109, 439, 754
BcnI CCSGG 1 cut(s) 2283
BcoDI GTCTC 5 cut(s) 36, 81, 1238, 1666, 1863
BcuI ACTAGT 1 cut(s) 1247
BfaI CTAG 8 cut(s) 342, 426, 801, 1248, 1802, 1818, 2078, 2262
BfmI CTRYAG 4 cut(s) 1191, 1218, 1287, 1651
BfuI GTATCC 1 cut(s) 442
BglI GCCNNNNNGGC 2 cut(s) 2155, 2158
Bme1390I CCNGG 7 cut(s) 201, 266, 1023, 1612, 2088, 2154, 2283
Bme18I GGWCC 1 cut(s) 556
BmgBI CACGTC 1 cut(s) 1423
BmgT120I GGNCC 4 cut(s) 556, 771, 1574, 2227
BmiI GGNNCC 3 cut(s) 772, 961, 1609
BmrFI CCNGG 7 cut(s) 201, 266, 1023, 1612, 2088, 2154, 2283
BmrI ACTGGG 2 cut(s) 483, 1594
BmsI GCATC 6 cut(s) 520, 713, 1100, 1228, 1405, 1537
BmuI ACTGGG 2 cut(s) 483, 1594
BpiI GAAGAC 1 cut(s) 2252
BpmI CTGGAG 5 cut(s) 57, 570, 1520, 1984, 2192
BpuEI CTTGAG 2 cut(s) 170, 1042
BpuMI CCSGG 1 cut(s) 2283
BsaI GGTCTC 1 cut(s) 1666
BsaJI CCNNGG 8 cut(s) 265, 679, 689, 1022, 2086, 2153, 2230, 2282
BsaWI WCCGGW 1 cut(s) 1100
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 1860, 1890, 2190, 2220
Bsc4I CCNNNNNNNGG 1 cut(s) 1758
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 7 cut(s) 489, 553, 1262, 1503, 1589, 1936, 2209
Bse3DI GCAATG 2 cut(s) 429, 1953
BseBI CCWGG 6 cut(s) 201, 266, 1023, 1612, 2088, 2154
BseDI CCNNGG 8 cut(s) 265, 679, 689, 1022, 2086, 2153, 2230, 2282
BseGI GGATG 5 cut(s) 67, 258, 326, 1243, 1925
BseLI CCNNNNNNNGG 1 cut(s) 1758
BseMI GCAATG 2 cut(s) 429, 1953
BseMII CTCAG 6 cut(s) 116, 929, 1233, 1316, 1395, 1677
BseNI ACTGG 7 cut(s) 489, 553, 1262, 1503, 1589, 1936, 2209
BseRI GAGGAG 1 cut(s) 54
BseX3I CGGCCG 2 cut(s) 2147, 2159
BsgI GTGCAG 2 cut(s) 507, 2233
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 2 cut(s) 2150, 2162
BshFI GGCC 9 cut(s) 716, 773, 974, 1575, 2074, 2149, 2161, 2229, 2235
BshNI GGYRCC 1 cut(s) 1607
BsiEI CGRYCG 2 cut(s) 2150, 2162
BsiHKAI GWGCWC 1 cut(s) 1584
BsiSI CCGG 3 cut(s) 416, 1101, 2282
BslI CCNNNNNNNGG 1 cut(s) 1758
BsmAI GTCTC 5 cut(s) 36, 81, 1238, 1666, 1863
BsmBI CGTCTC 1 cut(s) 81
BsmI GAATGC 2 cut(s) 897, 1973
BsnI GGCC 9 cut(s) 716, 773, 974, 1575, 2074, 2149, 2161, 2229, 2235
Bso31I GGTCTC 1 cut(s) 1666
Bsp1286I GDGCHC 1 cut(s) 1584
Bsp1407I TGTACA 1 cut(s) 1564
Bsp143I GATC 4 cut(s) 109, 439, 754, 1820
Bsp19I CCATGG 1 cut(s) 689
BspACI CCGC 9 cut(s) 84, 98, 149, 250, 774, 1120, 1355, 2150, 2158
BspANI GGCC 9 cut(s) 716, 773, 974, 1575, 2074, 2149, 2161, 2229, 2235
BspCNI CTCAG 6 cut(s) 117, 928, 1234, 1315, 1396, 1676
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 772, 961, 1609
BspMAI CTGCAG 2 cut(s) 1195, 1291
BspT107I GGYRCC 1 cut(s) 1607
BspTNI GGTCTC 1 cut(s) 1666
BsrDI GCAATG 2 cut(s) 429, 1953
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 1564
BsrI ACTGG 7 cut(s) 489, 553, 1262, 1503, 1589, 1936, 2209
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 8 cut(s) 265, 679, 689, 1022, 2086, 2153, 2230, 2282
BssMI GATC 4 cut(s) 109, 439, 754, 1820
BssSI CACGAG 1 cut(s) 1442
BssT1I CCWWGG 3 cut(s) 679, 689, 2230
Bst2BI CACGAG 1 cut(s) 1442
Bst2UI CCWGG 6 cut(s) 201, 266, 1023, 1612, 2088, 2154
BstAPI GCANNNNNTGC 4 cut(s) 121, 926, 1190, 2220
BstAUI TGTACA 1 cut(s) 1564
BstC8I GCNNGC 3 cut(s) 339, 927, 2204
BstDEI CTNAG 8 cut(s) 125, 915, 1047, 1242, 1302, 1404, 1663, 2272
BstDSI CCRYGG 1 cut(s) 689
BstEII GGTNACC 1 cut(s) 2119
BstF5I GGATG 5 cut(s) 67, 258, 326, 1243, 1925
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 4 cut(s) 112, 442, 757, 1823
BstMAI GTCTC 5 cut(s) 36, 81, 1238, 1666, 1863
BstMBI GATC 4 cut(s) 109, 439, 754, 1820
BstMCI CGRYCG 2 cut(s) 2150, 2162
BstNI CCWGG 6 cut(s) 201, 266, 1023, 1612, 2088, 2154
BstNSI RCATGY 3 cut(s) 337, 765, 2253
BstPI GGTNACC 1 cut(s) 2119
BstSCI CCNGG 7 cut(s) 199, 264, 1021, 1610, 2086, 2152, 2281
BstSFI CTRYAG 4 cut(s) 1191, 1218, 1287, 1651
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 2252
BstXI CCANNNNNNTGG 1 cut(s) 1584
BstZI CGGCCG 2 cut(s) 2147, 2159
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 9 cut(s) 716, 773, 974, 1575, 2074, 2149, 2161, 2229, 2235
BtgI CCRYGG 1 cut(s) 689
BtgZI GCGATG 1 cut(s) 1052
BtrI CACGTC 1 cut(s) 1423
BtsCI GGATG 5 cut(s) 67, 258, 326, 1243, 1925
BtsI GCAGTG 3 cut(s) 1296, 1378, 2115
Cac8I GCNNGC 3 cut(s) 339, 927, 2204
CaiI CAGNNNCTG 1 cut(s) 2093
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 4 cut(s) 556, 771, 1574, 2227
CseI GACGC 1 cut(s) 98
CsiI ACCWGGT 1 cut(s) 1610
Csp6I GTAC 3 cut(s) 76, 1565, 1615
CspCI CAANNNNNGTGG 2 cut(s) 1367, 1402
CviQI GTAC 3 cut(s) 76, 1565, 1615
DdeI CTNAG 8 cut(s) 125, 915, 1047, 1242, 1302, 1404, 1663, 2272
DpnI GATC 4 cut(s) 111, 441, 756, 1822
DpnII GATC 4 cut(s) 109, 439, 754, 1820
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 4 cut(s) 714, 2147, 2159, 2233
EagI CGGCCG 2 cut(s) 2147, 2159
EciI GGCGGA 2 cut(s) 99, 1370
EclXI CGGCCG 2 cut(s) 2147, 2159
Eco130I CCWWGG 3 cut(s) 679, 689, 2230
Eco147I AGGCCT 2 cut(s) 974, 2074
Eco31I GGTCTC 1 cut(s) 1666
Eco32I GATATC 3 cut(s) 300, 791, 1891
Eco47I GGWCC 1 cut(s) 556
Eco52I CGGCCG 2 cut(s) 2147, 2159
Eco57I CTGAAG 1 cut(s) 2189
Eco91I GGTNACC 1 cut(s) 2119
EcoO109I RGGNCCY 1 cut(s) 2227
EcoO65I GGTNACC 1 cut(s) 2119
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 6 cut(s) 199, 264, 1021, 1610, 2086, 2152
EcoRV GATATC 3 cut(s) 300, 791, 1891
EcoT14I CCWWGG 3 cut(s) 679, 689, 2230
EcoT22I ATGCAT 4 cut(s) 706, 1093, 1552, 1973
ErhI CCWWGG 3 cut(s) 679, 689, 2230
Esp3I CGTCTC 1 cut(s) 81
FalI AAGNNNNNCTT 2 cut(s) 1779, 1811
FauNDI CATATG 2 cut(s) 1987, 2035
FbaI TGATCA 3 cut(s) 109, 439, 754
FblI GTMKAC 1 cut(s) 2067
FokI GGATG 5 cut(s) 74, 265, 313, 1250, 1932
FspBI CTAG 8 cut(s) 342, 426, 801, 1248, 1802, 1818, 2078, 2262
GsuI CTGGAG 5 cut(s) 57, 570, 1520, 1984, 2192
HaeIII GGCC 9 cut(s) 716, 773, 974, 1575, 2074, 2149, 2161, 2229, 2235
HapII CCGG 3 cut(s) 416, 1101, 2282
HgaI GACGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 1060, 1793
HinfI GANTC 8 cut(s) 214, 272, 1055, 1346, 1748, 1871, 2042, 2096
HpaII CCGG 3 cut(s) 416, 1101, 2282
HphI GGTGA 3 cut(s) 1211, 1533, 1774
Hpy166II GTNNAC 3 cut(s) 103, 556, 2068
Hpy188I TCNGA 9 cut(s) 142, 219, 304, 370, 587, 1332, 1666, 2061, 2095
Hpy188III TCNNGA 5 cut(s) 36, 739, 1442, 1737, 2001
Hpy8I GTNNAC 3 cut(s) 103, 556, 2068
HpyAV CCTTC 6 cut(s) 7, 206, 761, 1420, 1734, 1777
HpyCH4IV ACGT 1 cut(s) 1422
HpyF3I CTNAG 8 cut(s) 125, 915, 1047, 1242, 1302, 1404, 1663, 2272
HpySE526I ACGT 1 cut(s) 1422
Ksp22I TGATCA 3 cut(s) 109, 439, 754
Kzo9I GATC 4 cut(s) 109, 439, 754, 1820
LmnI GCTCC 3 cut(s) 66, 2003, 2211
LweI GCATC 6 cut(s) 520, 713, 1100, 1228, 1405, 1537
MabI ACCWGGT 1 cut(s) 1610
MaeI CTAG 8 cut(s) 342, 426, 801, 1248, 1802, 1818, 2078, 2262
MaeII ACGT 1 cut(s) 1422
MaeIII GTNAC 9 cut(s) 49, 658, 1677, 1704, 1762, 1833, 2021, 2119, 2125
MalI GATC 4 cut(s) 111, 441, 756, 1822
MboI GATC 4 cut(s) 109, 439, 754, 1820
MboII GAAGA 5 cut(s) 486, 652, 1015, 1799, 2257
MfeI CAATTG 2 cut(s) 609, 1555
MhlI GDGCHC 1 cut(s) 1584
MlsI TGGCCA 2 cut(s) 716, 2235
MluI ACGCGT 1 cut(s) 90
MluNI TGGCCA 2 cut(s) 716, 2235
MlyI GAGTC 5 cut(s) 208, 1049, 1355, 1757, 1865
MmeI TCCRAC 4 cut(s) 120, 354, 1132, 1776
Mox20I TGGCCA 2 cut(s) 716, 2235
Mph1103I ATGCAT 4 cut(s) 706, 1093, 1552, 1973
MroXI GAANNNNTTC 2 cut(s) 951, 1794
MscI TGGCCA 2 cut(s) 716, 2235
MslI CAYNNNNRTG 3 cut(s) 529, 551, 762
Msp20I TGGCCA 2 cut(s) 716, 2235
MspA1I CMGCKG 3 cut(s) 250, 776, 1190
MspI CCGG 3 cut(s) 416, 1101, 2282
MspR9I CCNGG 7 cut(s) 201, 266, 1023, 1612, 2088, 2154, 2283
MunI CAATTG 2 cut(s) 609, 1555
Mva1269I GAATGC 2 cut(s) 897, 1973
MvaI CCWGG 6 cut(s) 201, 266, 1023, 1612, 2088, 2154
MvnI CGCG 1 cut(s) 92
NciI CCSGG 1 cut(s) 2283
NcoI CCATGG 1 cut(s) 689
NdeI CATATG 2 cut(s) 1987, 2035
NdeII GATC 4 cut(s) 109, 439, 754, 1820
NlaIV GGNNCC 3 cut(s) 772, 961, 1609
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 3 cut(s) 49, 658, 1762
NsiI ATGCAT 4 cut(s) 706, 1093, 1552, 1973
NspI RCATGY 3 cut(s) 337, 765, 2253
OliI CACNNNNGTG 2 cut(s) 529, 551
PceI AGGCCT 2 cut(s) 974, 2074
PciI ACATGT 2 cut(s) 761, 2249
PctI GAATGC 2 cut(s) 897, 1973
PdmI GAANNNNTTC 2 cut(s) 951, 1794
PfeI GAWTC 3 cut(s) 272, 2042, 2096
PflMI CCANNNNNTGG 1 cut(s) 1758
PfoI TCCNGGA 1 cut(s) 199
PleI GAGTC 5 cut(s) 208, 1049, 1354, 1756, 1865
PpsI GAGTC 5 cut(s) 208, 1049, 1354, 1756, 1865
PscI ACATGT 2 cut(s) 761, 2249
PshBI ATTAAT 2 cut(s) 1464, 2049
Psp6I CCWGG 6 cut(s) 199, 264, 1021, 1610, 2086, 2152
PspEI GGTNACC 1 cut(s) 2119
PspGI CCWGG 6 cut(s) 199, 264, 1021, 1610, 2086, 2152
PspN4I GGNNCC 3 cut(s) 772, 961, 1609
PspPI GGNCC 4 cut(s) 556, 771, 1574, 2227
PstI CTGCAG 2 cut(s) 1195, 1291
PstNI CAGNNNCTG 1 cut(s) 2093
PvuII CAGCTG 1 cut(s) 1190
RsaI GTAC 3 cut(s) 77, 1566, 1616
RsaNI GTAC 3 cut(s) 76, 1565, 1615
RseI CAYNNNNRTG 3 cut(s) 529, 551, 762
Sau3AI GATC 4 cut(s) 109, 439, 754, 1820
Sau96I GGNCC 4 cut(s) 556, 771, 1574, 2227
SchI GAGTC 5 cut(s) 208, 1049, 1355, 1757, 1865
ScrFI CCNGG 7 cut(s) 201, 266, 1023, 1612, 2088, 2154, 2283
SduI GDGCHC 1 cut(s) 1584
SexAI ACCWGGT 1 cut(s) 1610
SfaNI GCATC 6 cut(s) 520, 713, 1100, 1228, 1405, 1537
SfcI CTRYAG 4 cut(s) 1191, 1218, 1287, 1651
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 3 cut(s) 529, 551, 762
SmlI CTYRAG 2 cut(s) 185, 1057
SmoI CTYRAG 2 cut(s) 185, 1057
SpeI ACTAGT 1 cut(s) 1247
SseBI AGGCCT 2 cut(s) 974, 2074
SsiI CCGC 9 cut(s) 84, 98, 149, 250, 774, 1120, 1355, 2150, 2158
SspI AATATT 1 cut(s) 1528
SspMI CTAG 8 cut(s) 342, 426, 801, 1248, 1802, 1818, 2078, 2262
StuI AGGCCT 2 cut(s) 974, 2074
StyD4I CCNGG 7 cut(s) 199, 264, 1021, 1610, 2086, 2152, 2281
StyI CCWWGG 3 cut(s) 679, 689, 2230
TaiI ACGT 1 cut(s) 1425
TaqI TCGA 4 cut(s) 319, 1736, 1781, 1893
TaqII GACCGA 1 cut(s) 265
TatI WGTACW 1 cut(s) 1564
TauI GCSGC 4 cut(s) 776, 1122, 2152, 2161
TfiI GAWTC 3 cut(s) 272, 2042, 2096
TseFI GTSAC 3 cut(s) 49, 658, 1762
Tsp45I GTSAC 3 cut(s) 49, 658, 1762
TspDTI ATGAA 2 cut(s) 519, 761
TspGWI ACGGA 1 cut(s) 68
Van91I CCANNNNNTGG 1 cut(s) 1758
VpaK11BI GGWCC 1 cut(s) 556
VspI ATTAAT 2 cut(s) 1464, 2049
XapI RAATTY 1 cut(s) 581
XceI RCATGY 3 cut(s) 337, 765, 2253
XcmI CCANNNNNNNNNTGG 2 cut(s) 442, 550
XmiI GTMKAC 1 cut(s) 2067
XmnI GAANNNNTTC 2 cut(s) 951, 1794
XspI CTAG 8 cut(s) 342, 426, 801, 1248, 1802, 1818, 2078, 2262
Zsp2I ATGCAT 4 cut(s) 706, 1093, 1552, 1973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.