Rorug05G0522400

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000251
Physical Location & Seq
Reverse (-)
70803908 .. 70806184
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0522400.1

Sequence Viewer

Length: 558 bp
ATGGACAATTCAGTTCTTACAAATCCCACAAATTCTGAGATTCCGGTCGATCTCTTCGTCTCCAAGAAACATCCAGGCCTGCCATGTGGCGACTTGGGTTTCCTGGATTCCGCTGGTAACGTAGTTTTCAAGGTCACCCATCAATCTCTGAAGTCATCATCCAATAAGCGCGTGTTGCTTGATGCCGCTGGAAATCCTCTGCTTACTTTGTGCCTCAGTAATAGTGGATGTTGGCTAGGATATAAGGGCGGTCAAGCTGAGGAGAATCAGTTGGTATTTAGAGTGCAGAGAACGAAAAACAAACTTACTCGAATTGAGCTGGAGGTGTTTATTGGTGGTGAGATTTCAACAGAGGAAACCTGTGATTTTAAAGTGAAAGGGTTCCCGTTCCAAAAATCATGCAGCATCTATAGCGGCAATGACATAGTTGCTCAGACTAGTCTTATGTACAAATTGCACCAGCCTTTTCCTAAGAGGGGAAAATTTCGATTGACCATCTTTCCTGGATCTGTCGATCATGCTTTGGTTGCAGCCTTAATTGTAATATTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

185

Amino Acids

20.32

Weight (kDa)

8.59

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 16 - 183 1.3e-34 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 4 cut(s) 111, 186, 249, 414
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 2 cut(s) 31, 482
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 130, 348
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 73, 102, 502
AluBI AGCT 2 cut(s) 257, 319
AluI AGCT 2 cut(s) 257, 319
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 514
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 402, 530
ApoI RAATTY 2 cut(s) 31, 482
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 127, 350
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 414, 542
BccI CCATC 2 cut(s) 147, 503
BciT130I CCWGG 3 cut(s) 75, 104, 504
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 2 cut(s) 236, 438
BfmI CTRYAG 1 cut(s) 409
BisI GCNGC 4 cut(s) 186, 403, 415, 531
BlsI GCNGC 4 cut(s) 187, 404, 416, 532
Bme1390I CCNGG 3 cut(s) 75, 104, 504
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 3 cut(s) 75, 104, 504
BmsI GCATC 2 cut(s) 172, 414
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 424
BseBI CCWGG 3 cut(s) 75, 104, 504
BseGI GGATG 3 cut(s) 70, 158, 233
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 424
BseMII CTCAG 4 cut(s) 27, 229, 249, 446
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 414, 542
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 447
Bsp143I GATC 3 cut(s) 49, 506, 514
BspACI CCGC 4 cut(s) 111, 186, 249, 414
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 4 cut(s) 28, 228, 250, 445
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 383
BspPI GGATC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 447
BssMI GATC 3 cut(s) 49, 506, 514
Bst2UI CCWGG 3 cut(s) 75, 104, 504
Bst6I CTCTTC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 5 cut(s) 36, 215, 258, 432, 471
BstEII GGTNACC 1 cut(s) 133
BstF5I GGATG 3 cut(s) 70, 158, 233
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 52, 509, 517
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 49, 506, 514
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 175, 411, 527
BstNI CCWGG 3 cut(s) 75, 104, 504
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 3 cut(s) 73, 102, 502
BstSFI CTRYAG 1 cut(s) 409
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 414, 542
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 3 cut(s) 70, 158, 233
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 448
CviAII CATG 3 cut(s) 84, 399, 518
CviJI RGCY 6 cut(s) 78, 235, 257, 319, 463, 533
CviKI_1 RGCY 6 cut(s) 78, 235, 257, 319, 463, 533
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 5 cut(s) 36, 215, 258, 432, 471
DpnI GATC 3 cut(s) 51, 508, 516
DpnII GATC 3 cut(s) 49, 506, 514
DraI TTTAAA 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 170
Eco91I GGTNACC 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 133
EcoRII CCWGG 3 cut(s) 73, 102, 502
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 3 cut(s) 87, 402, 521
FaiI YATR 7 cut(s) 85, 243, 400, 411, 425, 446, 519
FatI CATG 3 cut(s) 83, 398, 517
Fnu4HI GCNGC 4 cut(s) 186, 403, 415, 531
FokI GGATG 3 cut(s) 57, 145, 240
Fsp4HI GCNGC 4 cut(s) 186, 403, 415, 531
FspBI CTAG 2 cut(s) 236, 438
GlaI GCGC 1 cut(s) 170
GluI GCNGC 4 cut(s) 186, 403, 415, 531
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 78
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 171
Hin1II CATG 3 cut(s) 87, 402, 521
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 3 cut(s) 40, 107, 265
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 127, 350
Hpy188I TCNGA 3 cut(s) 37, 150, 435
Hpy188III TCNNGA 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 4 cut(s) 286, 402, 457, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 411, 527
HpyF3I CTNAG 5 cut(s) 36, 215, 258, 432, 471
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 3 cut(s) 87, 402, 521
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 49, 506, 514
Lsp1109I GCAGC 2 cut(s) 414, 542
LweI GCATC 2 cut(s) 172, 414
MaeI CTAG 2 cut(s) 236, 438
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 116, 133
MalI GATC 3 cut(s) 51, 508, 516
MboI GATC 3 cut(s) 49, 506, 514
MboII GAAGA 1 cut(s) 46
MflI RGATCY 1 cut(s) 506
MluCI AATT 6 cut(s) 7, 31, 312, 452, 482, 537
MnlI CCTC 6 cut(s) 207, 224, 253, 316, 346, 468
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 2 cut(s) 369, 536
MspA1I CMGCKG 2 cut(s) 113, 188
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 75, 104, 504
MvaI CCWGG 3 cut(s) 75, 104, 504
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 175, 411, 527
NdeII GATC 3 cut(s) 49, 506, 514
NlaIII CATG 3 cut(s) 87, 402, 521
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 40, 107, 265
PfoI TCCNGGA 2 cut(s) 102, 502
PkrI GCNGC 4 cut(s) 187, 404, 416, 532
Psp6I CCWGG 3 cut(s) 73, 102, 502
PspEI GGTNACC 1 cut(s) 133
PspGI CCWGG 3 cut(s) 73, 102, 502
PspN4I GGNNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 506
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 2 cut(s) 369, 536
SatI GCNGC 4 cut(s) 186, 403, 415, 531
Sau3AI GATC 3 cut(s) 49, 506, 514
ScrFI CCNGG 3 cut(s) 75, 104, 504
SetI ASST 6 cut(s) 123, 135, 259, 321, 327, 362
SfaNI GCATC 2 cut(s) 172, 414
SfcI CTRYAG 1 cut(s) 409
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 6 cut(s) 7, 31, 312, 452, 482, 537
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 111, 186, 249, 414
SspI AATATT 1 cut(s) 546
SspMI CTAG 2 cut(s) 236, 438
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 73, 102, 502
TaiI ACGT 1 cut(s) 123
TaqI TCGA 4 cut(s) 48, 310, 487, 513
TasI AATT 6 cut(s) 7, 31, 312, 452, 482, 537
TatI WGTACW 1 cut(s) 447
TauI GCSGC 2 cut(s) 188, 417
TfiI GAWTC 3 cut(s) 40, 107, 265
Tru1I TTAA 2 cut(s) 369, 536
Tru9I TTAA 2 cut(s) 369, 536
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 402, 530
Tsp45I GTSAC 1 cut(s) 133
XapI RAATTY 2 cut(s) 31, 482
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 236, 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.