Prupe.6G356400_v2.0.a1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000251
Physical Location & Seq
Forward (+)
30235716 .. 30239481
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G356400.3

Sequence Viewer

Length: 2058 bp
ATGTGTCATTGGGTCGTAAAACCCAAACGAAAAAACCAGAAAAAAAAGGTTTTGTCAAGTTTGGTCTATCCCCTCGAATTGCCAGACTCCGAGAGCTTAGAAAGAAGAAGACCCGAAACCGGAAAGCACCATCAGCTCAGTAGAAGCACCATCCCACTTTCACCCACCAGGTGCTTACAATATACCTTTCTGGCGAATTTTCAATCTCTTTCAGGATGCGGAGAACCCTTAGAATCATGTGACACATCTGGTACTGCTCGTGGATACATGGAAGATCATTCTTTACCTGCACCAGACACTTCTCTTAGCTTGACAGAATATGTATTAGATTTAGCTATTGGGCAAGAATTTCCTGATGTTGAAACTTGCCGAAGAAGATTGAAGAATATTGCCCTAGTACAGCATTTTGATCTTCGTATAGTGAAATCAGACCGTAGCCGTTTTATAGCCAAGTGCTCCAAAGAAGGTTGTCCATGGCGTGTTCATGTAGCAAAATGTCCTGGAGTTCCAACCTTCACAGTAAGAACCCTGCATGGTGAGCATACTTGTGAAGGAGTTCTCAACCTTCATCATCAGCAAGCATCAGTAGGTTGGGTTGCTAGGTCTGTAGAAGCACGGGTTCGGGATAATCCACGATATAAGCCAAAAGAGATCCTGCAAGATATCCGTGATCAGCATGGAGTTGCTGTTTCTTACATGCAAGCTTGGCGTGGTAAGGAGCGTAGCATGGCAGCACTTCATGGAACTTTTGAAGAAGGGTATCGCCTTCTTCCTGCATACTGTGAGCAAATAAGGAAAACCAACCCAGGAAGCATTGCTTCAGTTTTTGCCATTGGACAAGAAAACTGCTTCCACCGTCTCTTTATTTCTTACCGTGCATCAATTTATGGTTTTATACATGCTTGTAGGCCACTTTTAGAACTTGATAGAGCACACCTCAAAGGCAAATACTTGGGTTCCTTACTTTGTGCCGCAGCTGTTGATGCTGATGATGCATTATTTCCACTGGCAATAGCTATCGTTGATGTAGAAAGTGACGAAAATTGGATGTGGTTTATGTCAGAATTGAGAAAACTACTTGGAGTAAGCACTGACAACATGCCTAGACTAACAATACTCTCTGAAAGACAAAGGGGTGTTGTAGAGGCTGTGGAAACTCATTTTCCAAGTGCCTTCCATGGTTTTTGTCTGCGTTATGTCAGCGAAAATTTTCGTGATACATTTAAGAATGCAAAGTTGGTGAATATCTTTTGGAATGCTGTTTATGCTCTCACTGCAGTTGAATTTGACAGCAAGATTGCAGAGATGGCAGAGATCTCGCAAGATGTGATACCATGGTTTCAACATTTCCCTCCCCAACTTTGGGCTGTCGCATATTTTGAAGGTGTGAGATATGGCCATTTTACTCTGGGTGTTACAGAGTTGTTGTATAATTGGGCCCTTGAATGCCATGAGCTCCCTATTGTGCAAATGATGGAGCACATTCGTCATCAGTTATCATCGTGGTATAATGATCGTCGGGATATGGGAATGAGGTGGGCATCAATATTAGTACCATCTGCTGAGAAGCGGGTTTTGGAGGCAATGGCTGATGCTCGATGCTATCAAGTACTTCGTGCAAATGAAGTTGAATTTGAGATTGTGTCGACTGAGCGGACAAATATTGTAGATATACAAACTCGTGTGTGCTCATGTCGCCGTTGGCATATATATGGTTTACCTTGTGCACATGCTGCTGCTGCACTTATGTCTTGTGGACACAATGTCCATTTATTTGCTGAGCCTTGGTTCACTGTAGCAAGTTACCGAGAGTCCTATTCACAGATGATTAATCCTATTCCAGATAAGAGCCTATGGAAGGAGCCAGGCGAGGGAACAGAGGGTGGAAGTGCCAATGTTGATATCACAATACGGCCACCCAAGACTCGGCGGCCACCTGGAAGACCCAAAAAGAAGGTCCTTCGTGTAGAGAACTTCAAGCGCCCAAAGAGAGTTGTTCAATGTGGTCGCTGCCATATGTTAGGACATTCTCAAAAGAAATGTACCTTGCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

686

Amino Acids

78.29

Weight (kDa)

8.8

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 1654
AccI GTMKAC 1 cut(s) 1646
AciI CCGC 5 cut(s) 219, 972, 1570, 1654, 1930
AclWI GGATC 1 cut(s) 646
AcoI YGGCCR 3 cut(s) 1396, 1913, 1931
AcsI RAATTY 5 cut(s) 196, 347, 1207, 1283, 1631
AcuI CTGAAG 1 cut(s) 804
AdeI CACNNNGTG 1 cut(s) 171
AfaI GTAC 5 cut(s) 253, 399, 1554, 1611, 2044
AfiI CCNNNNNNNGG 6 cut(s) 119, 1362, 1363, 1858, 1871, 1926
AhdI GACNNNNNGTC 1 cut(s) 1763
AjnI CCWGG 5 cut(s) 167, 499, 805, 1864, 1936
AjuI GAANNNNNNNTTGG 4 cut(s) 1220, 1252, 1559, 1591
AluBI AGCT 8 cut(s) 96, 136, 309, 335, 704, 977, 1016, 1456
AluI AGCT 8 cut(s) 96, 136, 309, 335, 704, 977, 1016, 1456
Alw21I GWGCWC 6 cut(s) 458, 934, 1458, 1482, 1691, 1729
Alw26I GTCTC 1 cut(s) 863
Alw44I GTGCAC 1 cut(s) 1725
AlwI GGATC 1 cut(s) 646
AoxI GGCC 5 cut(s) 908, 1396, 1437, 1913, 1931
ApaI GGGCCC 1 cut(s) 1441
ApaLI GTGCAC 1 cut(s) 1725
ApeKI GCWGC 6 cut(s) 731, 974, 1733, 1736, 1739, 2010
ApoI RAATTY 5 cut(s) 196, 347, 1207, 1283, 1631
ArsI GACNNNNNNTTYG 2 cut(s) 1941, 1973
AseI ATTAAT 1 cut(s) 1830
Asp700I GAANNNNTTC 2 cut(s) 555, 1209
AspLEI GCGC 1 cut(s) 1983
AspS9I GGNCC 3 cut(s) 1437, 1438, 1957
AsuHPI GGTGA 3 cut(s) 153, 548, 1252
AvaII GGWCC 1 cut(s) 1957
BaeGI GKGCMC 2 cut(s) 1441, 1729
BaeI ACNNNNGTAYC 2 cut(s) 1322, 1355
BalI TGGCCA 1 cut(s) 1398
BanII GRGCYC 2 cut(s) 1441, 1458
BauI CACGAG 2 cut(s) 258, 1680
BbsI GAAGAC 2 cut(s) 115, 1948
Bbv12I GWGCWC 6 cut(s) 458, 934, 1458, 1482, 1691, 1729
BbvI GCAGC 6 cut(s) 743, 986, 1720, 1723, 1726, 1997
BccI CCATC 5 cut(s) 138, 158, 1300, 1468, 1564
BceAI ACGGC 3 cut(s) 423, 1683, 1928
BcgI CGANNNNNNTGC 2 cut(s) 1299, 1333
BciT130I CCWGG 5 cut(s) 169, 501, 807, 1866, 1938
BciVI GTATCC 1 cut(s) 257
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 3 cut(s) 395, 600, 1104
BfmI CTRYAG 3 cut(s) 606, 1275, 1794
BfoI RGCGCY 1 cut(s) 1984
BfuAI ACCTGC 1 cut(s) 295
BfuI GTATCC 1 cut(s) 257
BglII AGATCT 1 cut(s) 1314
BisI GCNGC 8 cut(s) 732, 972, 975, 1734, 1737, 1740, 1931, 2011
BlpI GCTNAGC 1 cut(s) 1779
BlsI GCNGC 8 cut(s) 733, 973, 976, 1735, 1738, 1741, 1932, 2012
BmcAI AGTACT 1 cut(s) 1611
Bme1390I CCNGG 5 cut(s) 169, 501, 807, 1866, 1938
Bme18I GGWCC 1 cut(s) 1957
BmeRI GACNNNNNGTC 1 cut(s) 1763
BmgT120I GGNCC 3 cut(s) 1437, 1438, 1957
BmiI GGNNCC 3 cut(s) 958, 1439, 1863
BmrFI CCNGG 5 cut(s) 169, 501, 807, 1866, 1938
BmsI GCATC 8 cut(s) 206, 590, 887, 973, 982, 1550, 1582, 1589
BpiI GAAGAC 2 cut(s) 115, 1948
BplI GAGNNNNNCTC 2 cut(s) 921, 953
BpmI CTGGAG 1 cut(s) 522
Bpu1102I GCTNAGC 1 cut(s) 1779
BsaJI CCNNGG 5 cut(s) 473, 805, 1177, 1334, 1784
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 1362, 1363, 1858, 1871, 1926
Bse1I ACTGG 1 cut(s) 1011
Bse3DI GCAATG 2 cut(s) 813, 1590
BseBI CCWGG 5 cut(s) 169, 501, 807, 1866, 1938
BseDI CCNNGG 5 cut(s) 473, 805, 1177, 1334, 1784
BseGI GGATG 3 cut(s) 150, 221, 1053
BseLI CCNNNNNNNGG 6 cut(s) 119, 1362, 1363, 1858, 1871, 1926
BseMI GCAATG 2 cut(s) 813, 1590
BseMII CTCAG 4 cut(s) 151, 1554, 1641, 1770
BseNI ACTGG 1 cut(s) 1011
BseSI GKGCMC 2 cut(s) 1441, 1729
BseXI GCAGC 6 cut(s) 743, 986, 1720, 1723, 1726, 1997
BsgI GTGCAG 2 cut(s) 273, 1725
BshFI GGCC 5 cut(s) 910, 1398, 1439, 1915, 1933
BsiHKAI GWGCWC 6 cut(s) 458, 934, 1458, 1482, 1691, 1729
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 6 cut(s) 119, 1362, 1363, 1858, 1871, 1926
BsmAI GTCTC 1 cut(s) 863
BsmBI CGTCTC 1 cut(s) 863
BsmI GAATGC 3 cut(s) 1234, 1261, 1451
BsnI GGCC 5 cut(s) 910, 1398, 1439, 1915, 1933
Bsp120I GGGCCC 1 cut(s) 1437
Bsp1286I GDGCHC 7 cut(s) 458, 934, 1441, 1458, 1482, 1691, 1729
Bsp143I GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
Bsp1720I GCTNAGC 1 cut(s) 1779
Bsp19I CCATGG 3 cut(s) 473, 1177, 1334
BspACI CCGC 5 cut(s) 219, 972, 1570, 1654, 1930
BspANI GGCC 5 cut(s) 910, 1398, 1439, 1915, 1933
BspCNI CTCAG 4 cut(s) 150, 1555, 1642, 1771
BspLI GGNNCC 3 cut(s) 958, 1439, 1863
BspMAI CTGCAG 1 cut(s) 1279
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 1654
BsrDI GCAATG 2 cut(s) 813, 1590
BsrI ACTGG 1 cut(s) 1011
BssECI CCNNGG 5 cut(s) 473, 805, 1177, 1334, 1784
BssMI GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
BssSI CACGAG 2 cut(s) 258, 1680
BssT1I CCWWGG 4 cut(s) 473, 1177, 1334, 1784
Bst2BI CACGAG 2 cut(s) 258, 1680
Bst2UI CCWGG 5 cut(s) 169, 501, 807, 1866, 1938
Bst4CI ACNGT 6 cut(s) 434, 520, 782, 857, 875, 1795
BstAPI GCANNNNNTGC 1 cut(s) 1733
BstC8I GCNNGC 2 cut(s) 579, 702
BstDEI CTNAG 7 cut(s) 97, 137, 229, 305, 1563, 1650, 1779
BstDSI CCRYGG 3 cut(s) 473, 1177, 1334
BstENI CCTNNNNNAGG 1 cut(s) 1856
BstF5I GGATG 3 cut(s) 150, 221, 1053
BstH2I RGCGCY 1 cut(s) 1984
BstHHI GCGC 1 cut(s) 1983
BstKTI GATC 6 cut(s) 277, 412, 654, 673, 1317, 1516
BstMAI GTCTC 1 cut(s) 863
BstMBI GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
BstNI CCWGG 5 cut(s) 169, 501, 807, 1866, 1938
BstNSI RCATGY 4 cut(s) 700, 902, 1102, 1733
BstSCI CCNGG 5 cut(s) 167, 499, 805, 1864, 1936
BstSFI CTRYAG 3 cut(s) 606, 1275, 1794
BstSLI GKGCMC 2 cut(s) 1441, 1729
BstV1I GCAGC 6 cut(s) 743, 986, 1720, 1723, 1726, 1997
BstV2I GAAGAC 2 cut(s) 115, 1948
BstX2I RGATCY 2 cut(s) 651, 1314
BstYI RGATCY 2 cut(s) 651, 1314
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 5 cut(s) 910, 1398, 1439, 1915, 1933
BtgI CCRYGG 3 cut(s) 473, 1177, 1334
BtsCI GGATG 3 cut(s) 150, 221, 1053
BtsI GCAGTG 1 cut(s) 1272
BtsIMutI CAGTG 4 cut(s) 1004, 1089, 1272, 1791
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 579, 702
CfoI GCGC 1 cut(s) 1983
Cfr13I GGNCC 3 cut(s) 1437, 1438, 1957
CsiI ACCWGGT 1 cut(s) 167
Csp6I GTAC 5 cut(s) 252, 398, 1553, 1610, 2043
CviQI GTAC 5 cut(s) 252, 398, 1553, 1610, 2043
DdeI CTNAG 7 cut(s) 97, 137, 229, 305, 1563, 1650, 1779
DpnI GATC 6 cut(s) 276, 411, 653, 672, 1316, 1515
DpnII GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
DraIII CACNNNGTG 1 cut(s) 171
DriI GACNNNNNGTC 1 cut(s) 1763
EaeI YGGCCR 3 cut(s) 1396, 1913, 1931
Eam1105I GACNNNNNGTC 1 cut(s) 1763
Ecl136II GAGCTC 1 cut(s) 1456
Eco130I CCWWGG 4 cut(s) 473, 1177, 1334, 1784
Eco24I GRGCYC 2 cut(s) 1441, 1458
Eco32I GATATC 2 cut(s) 664, 1903
Eco47I GGWCC 1 cut(s) 1957
Eco53kI GAGCTC 1 cut(s) 1456
Eco57I CTGAAG 1 cut(s) 804
EcoICRI GAGCTC 1 cut(s) 1456
EcoNI CCTNNNNNAGG 1 cut(s) 1856
EcoO109I RGGNCCY 2 cut(s) 1438, 1957
EcoRII CCWGG 5 cut(s) 167, 499, 805, 1864, 1936
EcoRV GATATC 2 cut(s) 664, 1903
EcoT14I CCWWGG 4 cut(s) 473, 1177, 1334, 1784
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 2 cut(s) 1441, 1458
ErhI CCWWGG 4 cut(s) 473, 1177, 1334, 1784
Esp3I CGTCTC 1 cut(s) 863
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FauI CCCGC 1 cut(s) 1563
FauNDI CATATG 1 cut(s) 2016
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 1646
Fnu4HI GCNGC 8 cut(s) 732, 972, 975, 1734, 1737, 1740, 1931, 2011
FokI GGATG 3 cut(s) 137, 228, 1060
FriOI GRGCYC 2 cut(s) 1441, 1458
Fsp4HI GCNGC 8 cut(s) 732, 972, 975, 1734, 1737, 1740, 1931, 2011
FspBI CTAG 3 cut(s) 395, 600, 1104
GlaI GCGC 1 cut(s) 1982
GluI GCNGC 8 cut(s) 732, 972, 975, 1734, 1737, 1740, 1931, 2011
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 1984
HaeIII GGCC 5 cut(s) 910, 1398, 1439, 1915, 1933
HapII CCGG 1 cut(s) 120
HhaI GCGC 1 cut(s) 1983
Hin6I GCGC 1 cut(s) 1981
HinP1I GCGC 1 cut(s) 1981
HincII GTYRAC 1 cut(s) 1647
HindII GTYRAC 1 cut(s) 1647
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 4 cut(s) 86, 233, 1811, 1924
HpaII CCGG 1 cut(s) 120
HphI GGTGA 3 cut(s) 153, 548, 1252
Hpy166II GTNNAC 5 cut(s) 1647, 1718, 1727, 1757, 1791
Hpy188I TCNGA 4 cut(s) 91, 430, 1063, 1123
Hpy188III TCNNGA 6 cut(s) 213, 353, 623, 1214, 1520, 1841
Hpy8I GTNNAC 5 cut(s) 1647, 1718, 1727, 1757, 1791
Hpy99I CGWCG 1 cut(s) 1521
HpyCH4III ACNGT 6 cut(s) 434, 520, 782, 857, 875, 1795
HpyF3I CTNAG 7 cut(s) 97, 137, 229, 305, 1563, 1650, 1779
HspAI GCGC 1 cut(s) 1981
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
LmnI GCTCC 5 cut(s) 461, 718, 1461, 1477, 1861
Lsp1109I GCAGC 6 cut(s) 743, 986, 1720, 1723, 1726, 1997
LweI GCATC 8 cut(s) 206, 590, 887, 973, 982, 1550, 1582, 1589
MabI ACCWGGT 1 cut(s) 167
MaeI CTAG 3 cut(s) 395, 600, 1104
MaeIII GTNAC 4 cut(s) 239, 1034, 1414, 1802
MalI GATC 6 cut(s) 276, 411, 653, 672, 1316, 1515
MbiI CCGCTC 1 cut(s) 1654
MboI GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
MflI RGATCY 2 cut(s) 651, 1314
MhlI GDGCHC 7 cut(s) 458, 934, 1441, 1458, 1482, 1691, 1729
MlsI TGGCCA 1 cut(s) 1398
MluNI TGGCCA 1 cut(s) 1398
MlyI GAGTC 3 cut(s) 80, 1820, 1918
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 8 cut(s) 83, 947, 1138, 1362, 1527, 1573, 1864, 1873
Mox20I TGGCCA 1 cut(s) 1398
Mph1103I ATGCAT 1 cut(s) 997
MroXI GAANNNNTTC 2 cut(s) 555, 1209
MscI TGGCCA 1 cut(s) 1398
MseI TTAA 2 cut(s) 1224, 1830
MslI CAYNNNNRTG 2 cut(s) 546, 1710
Msp20I TGGCCA 1 cut(s) 1398
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 5 cut(s) 169, 501, 807, 1866, 1938
Mva1269I GAATGC 3 cut(s) 1234, 1261, 1451
MvaI CCWGG 5 cut(s) 169, 501, 807, 1866, 1938
NcoI CCATGG 3 cut(s) 473, 1177, 1334
NdeI CATATG 1 cut(s) 2016
NdeII GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
NlaIV GGNNCC 3 cut(s) 958, 1439, 1863
NmeAIII GCCGAG 1 cut(s) 1906
NmuCI GTSAC 2 cut(s) 239, 1034
NsiI ATGCAT 1 cut(s) 997
NspI RCATGY 4 cut(s) 700, 902, 1102, 1733
PctI GAATGC 3 cut(s) 1234, 1261, 1451
PdmI GAANNNNTTC 2 cut(s) 555, 1209
PfeI GAWTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 8 cut(s) 733, 973, 976, 1735, 1738, 1741, 1932, 2012
PleI GAGTC 3 cut(s) 80, 1819, 1918
PpsI GAGTC 3 cut(s) 80, 1819, 1918
PpuMI RGGWCCY 1 cut(s) 1957
PshBI ATTAAT 1 cut(s) 1830
Psp124BI GAGCTC 1 cut(s) 1458
Psp5II RGGWCCY 1 cut(s) 1957
Psp6I CCWGG 5 cut(s) 167, 499, 805, 1864, 1936
PspGI CCWGG 5 cut(s) 167, 499, 805, 1864, 1936
PspN4I GGNNCC 3 cut(s) 958, 1439, 1863
PspOMI GGGCCC 1 cut(s) 1437
PspPI GGNCC 3 cut(s) 1437, 1438, 1957
PspPPI RGGWCCY 1 cut(s) 1957
PstI CTGCAG 1 cut(s) 1279
PsuI RGATCY 2 cut(s) 651, 1314
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 5 cut(s) 253, 399, 1554, 1611, 2044
RsaNI GTAC 5 cut(s) 252, 398, 1553, 1610, 2043
RseI CAYNNNNRTG 2 cut(s) 546, 1710
SacI GAGCTC 1 cut(s) 1458
SalI GTCGAC 1 cut(s) 1645
SaqAI TTAA 2 cut(s) 1224, 1830
SatI GCNGC 8 cut(s) 732, 972, 975, 1734, 1737, 1740, 1931, 2011
Sau3AI GATC 6 cut(s) 274, 409, 651, 670, 1314, 1513
Sau96I GGNCC 3 cut(s) 1437, 1438, 1957
ScaI AGTACT 1 cut(s) 1611
SchI GAGTC 3 cut(s) 80, 1820, 1918
ScrFI CCNGG 5 cut(s) 169, 501, 807, 1866, 1938
SduI GDGCHC 7 cut(s) 458, 934, 1441, 1458, 1482, 1691, 1729
SexAI ACCWGGT 1 cut(s) 167
SfaNI GCATC 8 cut(s) 206, 590, 887, 973, 982, 1550, 1582, 1589
SfcI CTRYAG 3 cut(s) 606, 1275, 1794
SinI GGWCC 1 cut(s) 1957
SmiMI CAYNNNNRTG 2 cut(s) 546, 1710
SsiI CCGC 5 cut(s) 219, 972, 1570, 1654, 1930
SspI AATATT 3 cut(s) 388, 1548, 1663
SspMI CTAG 3 cut(s) 395, 600, 1104
SstI GAGCTC 1 cut(s) 1458
StyD4I CCNGG 5 cut(s) 167, 499, 805, 1864, 1936
StyI CCWWGG 4 cut(s) 473, 1177, 1334, 1784
TaaI ACNGT 6 cut(s) 434, 520, 782, 857, 875, 1795
TaqI TCGA 3 cut(s) 75, 1597, 1646
TatI WGTACW 2 cut(s) 397, 1609
TauI GCSGC 2 cut(s) 974, 1933
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 1224, 1830
Tru9I TTAA 2 cut(s) 1224, 1830
TscAI CASTG 4 cut(s) 1011, 1096, 1279, 1798
TseFI GTSAC 2 cut(s) 239, 1034
TseI GCWGC 6 cut(s) 731, 974, 1733, 1736, 1739, 2010
Tsp45I GTSAC 2 cut(s) 239, 1034
TspDTI ATGAA 4 cut(s) 473, 557, 728, 1638
TspGWI ACGGA 1 cut(s) 656
TspRI CASTG 4 cut(s) 1011, 1096, 1279, 1798
VneI GTGCAC 1 cut(s) 1725
VpaK11BI GGWCC 1 cut(s) 1957
VspI ATTAAT 1 cut(s) 1830
XagI CCTNNNNNAGG 1 cut(s) 1856
XapI RAATTY 5 cut(s) 196, 347, 1207, 1283, 1631
XceI RCATGY 4 cut(s) 700, 902, 1102, 1733
XmiI GTMKAC 1 cut(s) 1646
XmnI GAANNNNTTC 2 cut(s) 555, 1209
XspI CTAG 3 cut(s) 395, 600, 1104
ZrmI AGTACT 1 cut(s) 1611
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.