pycom04g21020

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000251
Physical Location & Seq
Forward (+)
22396079 .. 22396351
273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21020.1

Sequence Viewer

Length: 273 bp
ATGGAAGATCAATCTTTAGCTGTGCAGAACAATTCTCATGCTTTGACAGAATATGCTTTAGACTTGGCTATTGGGCAAGAATTTCCTGATGTTGAAACATGCAGAAGAAGATTGAAGAACATTGCTCTAGTACAACATTTTGATCTATCGTATAGTGAAATCAGATCGCAGCCGGTTTATAGCCAAGTGCTCCAAAGAAGGTTGCCCATGGCGTGTCCATGTGGCAAAATGTCCCGGAGGTCCAACCTTTACAGTAAGAACCCTGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

91

Amino Acids

10.39

Weight (kDa)

8.55

Isoelectric Point (pI)

99.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 2 cut(s) 95, 115
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 173, 235
BslFI GGGAC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 7, 142, 164
Bsp19I CCATGG 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 7, 142, 164
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 207
BstKTI GATC 3 cut(s) 10, 145, 167
BstMBI GATC 3 cut(s) 7, 142, 164
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 131
CviAII CATG 5 cut(s) 38, 99, 208, 219, 267
CviJI RGCY 4 cut(s) 20, 68, 172, 183
CviKI_1 RGCY 4 cut(s) 20, 68, 172, 183
CviQI GTAC 1 cut(s) 131
DpnI GATC 3 cut(s) 9, 144, 166
DpnII GATC 3 cut(s) 7, 142, 164
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 5 cut(s) 41, 102, 211, 222, 270
FaiI YATR 8 cut(s) 39, 54, 100, 153, 180, 209, 220, 268
FaqI GGGAC 1 cut(s) 217
FatI CATG 5 cut(s) 37, 98, 207, 218, 266
Fnu4HI GCNGC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 170
HapII CCGG 2 cut(s) 173, 235
Hin1II CATG 5 cut(s) 41, 102, 211, 222, 270
HpaII CCGG 2 cut(s) 173, 235
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 25, 102, 266
Hsp92II CATG 5 cut(s) 41, 102, 211, 222, 270
Kzo9I GATC 3 cut(s) 7, 142, 164
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 3 cut(s) 99, 186, 248
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 128
MalI GATC 3 cut(s) 9, 144, 166
MboI GATC 3 cut(s) 7, 142, 164
MboII GAAGA 4 cut(s) 17, 117, 120, 127
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 31, 80
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 1 cut(s) 231
MspI CCGG 2 cut(s) 173, 235
MspR9I CCNGG 1 cut(s) 235
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 207
NdeII GATC 3 cut(s) 7, 142, 164
NlaIII CATG 5 cut(s) 41, 102, 211, 222, 270
NspI RCATGY 1 cut(s) 102
PfoI TCCNGGA 1 cut(s) 233
PkrI GCNGC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 7, 142, 164
Sau96I GGNCC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 235
SduI GDGCHC 1 cut(s) 192
SetI ASST 4 cut(s) 22, 203, 242, 249
SinI GGWCC 1 cut(s) 240
Sse9I AATT 2 cut(s) 31, 80
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 254
TasI AATT 2 cut(s) 31, 80
TatI WGTACW 1 cut(s) 130
TseI GCWGC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 102
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.