RLG00000007221

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000251
Physical Location & Seq
Forward (+)
14714289 .. 14717173
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007221

Sequence Viewer

Length: 471 bp
ATGGCTGCAAAGAAAGTTATAGCAATATGCCAATCCGGAGGAGACTTCGTGACGGATAAGGATGGGAGTTTATCGTACAGTGGCGGAGAAGCGTATGCAGTTGACATTGATCAGCAAACGCTGCTGAGTGATTTCAAGTCCGAAATAGCGGAGATGTTTAGCTGTAGTGCTGATACAATGTCGCTCAAGTATTTCCTTCCGGGCAATAAGAAGACGCTCATTACAATCTCTAAAGATAAGGACCTGCAGCGGATGGTCAATTTCCTGGGGGATTCGGTCAGTGTGGATGTCTTTGTCATCTCGGAGGAAACTGCTGCTCGAAATACATCCAACATGCCTGCTAGTAGGTCAAGCCGGACAACTGTATCTGAAGCAGTAGTTCCTGTTGCTGAGCAGCTTGGCCTTGTTGATGCGCCAGGGTTAGTAGTTTACTGCTCAGTAAATTTGCGTCTCAGTAACCCTACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

157

Amino Acids

16.77

Weight (kDa)

4.67

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 6 - 90 6.4e-07 PB1-like domain
PB1 PF00564 21 - 90 1.8e-08 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 3 cut(s) 84, 149, 250
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 2 cut(s) 264, 415
AluBI AGCT 2 cut(s) 162, 397
AluI AGCT 2 cut(s) 162, 397
Alw26I GTCTC 2 cut(s) 36, 455
Aor13HI TCCGGA 1 cut(s) 35
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 5 cut(s) 5, 121, 247, 314, 394
ApoI RAATTY 1 cut(s) 442
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BbsI GAAGAC 1 cut(s) 218
BbvI GCAGC 4 cut(s) 108, 259, 301, 406
BccI CCATC 2 cut(s) 56, 247
BciT130I CCWGG 2 cut(s) 266, 417
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 36, 455
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 163, 245
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 5 cut(s) 6, 122, 248, 315, 395
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 5 cut(s) 7, 123, 249, 316, 396
Bme1390I CCNGG 3 cut(s) 201, 266, 417
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 201, 266, 417
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 265, 416
BsaWI WCCGGW 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 2 cut(s) 266, 417
BseDI CCNNGG 2 cut(s) 265, 416
BseGI GGATG 4 cut(s) 67, 258, 292, 326
BseMII CTCAG 4 cut(s) 116, 381, 450, 466
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 108, 259, 301, 406
BshFI GGCC 1 cut(s) 402
BsiSI CCGG 3 cut(s) 36, 200, 355
BsmAI GTCTC 2 cut(s) 36, 455
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 1 cut(s) 402
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 3 cut(s) 84, 149, 250
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 4 cut(s) 117, 382, 449, 465
BspEI TCCGGA 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 265, 416
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 266, 417
Bst4CI ACNGT 2 cut(s) 80, 364
BstAPI GCANNNNNTGC 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 125, 390, 436, 452
BstF5I GGATG 4 cut(s) 67, 258, 292, 326
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 36, 455
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 266, 417
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 199, 264, 415
BstSFI CTRYAG 2 cut(s) 163, 245
BstV1I GCAGC 4 cut(s) 108, 259, 301, 406
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 4 cut(s) 67, 258, 292, 326
BtsIMutI CAGTG 2 cut(s) 85, 286
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 2 cut(s) 223, 437
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 334
CviJI RGCY 5 cut(s) 5, 162, 354, 397, 402
CviKI_1 RGCY 5 cut(s) 5, 162, 354, 397, 402
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 4 cut(s) 125, 390, 436, 452
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 264, 415
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 20, 28, 96, 335
FatI CATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 5 cut(s) 6, 122, 248, 315, 395
FokI GGATG 4 cut(s) 74, 265, 299, 313
Fsp4HI GCNGC 5 cut(s) 6, 122, 248, 315, 395
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 414
GluI GCNGC 5 cut(s) 6, 122, 248, 315, 395
HaeIII GGCC 1 cut(s) 402
HapII CCGG 3 cut(s) 36, 200, 355
HgaI GACGC 2 cut(s) 223, 437
HhaI GCGC 1 cut(s) 415
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 1 cut(s) 272
HpaII CCGG 3 cut(s) 36, 200, 355
Hpy166II GTNNAC 2 cut(s) 103, 430
Hpy188I TCNGA 3 cut(s) 142, 304, 370
Hpy188III TCNNGA 2 cut(s) 36, 49
Hpy8I GTNNAC 2 cut(s) 103, 430
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 2 cut(s) 80, 364
HpyCH4V TGCA 3 cut(s) 8, 98, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 4 cut(s) 125, 390, 436, 452
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
Lsp1109I GCAGC 4 cut(s) 108, 259, 301, 406
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 2 cut(s) 49, 455
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 223
MluCI AATT 2 cut(s) 259, 442
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 2 cut(s) 32, 298
MroI TCCGGA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 3 cut(s) 36, 200, 355
MspR9I CCNGG 3 cut(s) 201, 266, 417
MvaI CCWGG 2 cut(s) 266, 417
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 201
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 337
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 5 cut(s) 7, 123, 249, 316, 396
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 264, 415
PspGI CCWGG 2 cut(s) 264, 415
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 249
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SatI GCNGC 5 cut(s) 6, 122, 248, 315, 395
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 201, 266, 417
SetI ASST 4 cut(s) 164, 246, 350, 399
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 163, 245
SinI GGWCC 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 259, 442
SsiI CCGC 3 cut(s) 84, 149, 250
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 199, 264, 415
TaaI ACNGT 2 cut(s) 80, 364
TaqI TCGA 1 cut(s) 319
TaqII GACCGA 1 cut(s) 265
TasI AATT 2 cut(s) 259, 442
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 2 cut(s) 85, 286
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 5 cut(s) 5, 121, 247, 314, 394
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 85, 286
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 442
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.