MD05G1203600.v1.1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000251
Physical Location & Seq
Forward (+)
33361285 .. 33364379
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1203600.v1.1.491

Sequence Viewer

Length: 2298 bp
ATGGCGGACCATAATTTGGTTCTCGGGCAGAATGGTGATCTGCCATTGAGGCAGAATTCACATCCCAGTCTGGGGCAGGATCACAATCCAGCGCTAGGTCAAAGTCATGACTTTGCGTTGGGGCATGCCCATGAGCAGGATTTGGAATTAGGTCATCGTAGTCATGACGGTAAGCAGGGTTTTAGGAATCCCCATGATCATGGATTGGCTTTCAATCAGACAAATGAACATGAGATAGGTCTTCAACATACGCGTATACAAAATCTTGAAGAAGAAGGTTTGGAGTTGGAGCAAGATATTGGGGTTGAAACTGATCAGGAGAATGTTGATGACGACAATGACAATGACCTTGCTCTTACAGTGGCTACTCATGAGTTGGGTTTATCAGATAATCATGAATTGTCTGTTGTGGAGGACCATGATCTTCATGAAAATTTGGATTTAGCGATGGATCAAAATCAGGAGATGGGTATTGTACCTGACTCGGACATGTGTTTGCAGCACTCCCACCTTTTAGATACTCCTCCTGTCCTTCAGTATCGATCTCTTGCTTTGACAACTAATCACCAGCTGACTGTTGGGCAAGAGTTTCCTGATGTTCAGAGCTGTCGAAGGGCACTGAGAGATGCTGCTATTGCCCTTCGCTTTGAGATGCAGACAGTCAAGTCTGACAAGACTCGTTTCACTGCCAAGTGTGCAACTGAAGGATGCGCTTGGCGAATTCATGCTGCAAAGCTGCCAGGTGTTCCTACTTTCACGATAAGGACCATCCATGAAGAACACACCTGTGGTGGAATCACCCATCTTGGTCACCAACAAGCCTCAGTCCAGTGGGTTGCAGATTCTGTGGAACAACGCTTGAGGGAAAATCCTAATTACAAACCAAAAGAGATACTAGAAGAGATTCACCGAGTCCATGGCATTGCATTGTCGTATAAGCAGGCATGGAGGGGAAAGGAACGGCTCATGGCAGCTGTTCGTGGATCCTTCGAAGAAGATTATCGACTTCTTCCTCAATACTGTGACCAGATCAGAAGGACCAATCCTGGAAGCATTGCACAGGTTTATGGTAGTCCGGATGATAGCTCCTTCCAACGCCTATTTGTTTCATTACATGCATCTATATACGGGTTTCTGAATGCCTGCCGGCCTCTTCTTGGGCTCGATAGAACTCATCTGAAAAGTAAGTATCTTGGGACTTTGCTTTTTGCCACTGGGTTTGATGGAGATGGAGCTCTGTTTCCATTAGCGTTTGGGGTGGTTGACGAAGAGAATGATGAAAATTGGATGTGGTTTCTCTCTGAGCTCCGTGTCCTCCTTGAAAATTATGCAGAGTACATGCCAAGGCTTACCATTTTGTCTGATAGACAGAAGGGTATTGTTGATGGGGTGGAACTAAACTTCCCAACTGCCTTTCATGGGTTTTGTATGCGCCATTTAAGTGACAGTTTAAGAAAGGAATTTAATAATACTCTGCTCGTTAACCTTCTCTGGGAGGCTGCTTATGCTCTTACTGGCATTGGGTTTGAACAAAAACTTATCGAGATTGAAGCTATATCACAGGAAGCAGCCCATTGGATTAAACAAATTTCTCCCCGCTTGTGGGCAACAGCATATTTTGAGGGAACAAGGTTTGGGCAGTTGACGGCTAATATGGTTGAGTCTATAAATTCTTGGATAGTAGAAGCATCTGGGCTTCCAATAATTCAGATGATGGAGTGTATCAGACGGCATCTGATGACTTGGTTCAATGAGCGTCGTGAGATGAGCATGCAGTGGACGGGCATACTCGTTCCTTCTGCTGAAAAGTGTGTGTTAGATGCAGTTGCGCTTGCTCGTACTTACAATGTGATCCGTGCAAATGAAGCTGAATTTGAAGTTAGAACTCATGAAGGATCAGTCACGGTGGACATTCGTACCCGTTGTTGCTCATGTCGTGGATGGCAGCTATGTGGATTGCCATGTTCTCATGCCGCAGCAGCCCTCGAGTCCTGCAGGCAACATGTCTATCGGTTCACTGAGAGTTGCTTCACAGTGGCAAATTATCGGAAAGCCTACTCAGAGACGATTCATCCAATTCCAGATAGAACTCTGTGGAAGGAGATAGCTGGATTCCCAAATGAAGGTAACCCAGATATGTGGATGGTTATTAACCCGCCAAAGTCGCTTCGACCACCTGGACGACCAAGGAAAAGGCGAATTCGTACAGAAGATGGTAGTCGCACGAAACGAGTTGTGCATTGCAGCCGCTGTAATCAGACCGGACACTTCCGAACAACTTGTGCTGCCCCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

766

Amino Acids

86.87

Weight (kDa)

5.8

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 189 - 254 7.1e-26 MuDR family transposase
MULE PF10551 386 - 481 1.6e-18 MULE transposase domain
SWIM PF04434 635 - 665 1.1e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 256
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 1075
AciI CCGC 5 cut(s) 5, 1597, 1974, 2156, 2248
AclWI GGATC 6 cut(s) 87, 459, 978, 991, 1846, 1903
AcsI RAATTY 8 cut(s) 55, 433, 720, 1460, 1587, 1669, 1871, 2199
AcuI CTGAAG 2 cut(s) 518, 723
AfaI GTAC 5 cut(s) 477, 1337, 1840, 1918, 2206
AfeI AGCGCT 1 cut(s) 93
AflIII ACRYGT 3 cut(s) 251, 489, 2002
AgsI TTSAA 9 cut(s) 214, 245, 269, 308, 1322, 1529, 1550, 1750, 1877
AjnI CCWGG 3 cut(s) 739, 1045, 2176
AleI CACNNNNGTG 1 cut(s) 786
AloI GAACNNNNNNTCC 2 cut(s) 1386, 1418
Alw21I GWGCWC 2 cut(s) 1237, 1308
Alw26I GTCTC 1 cut(s) 2057
AlwI GGATC 6 cut(s) 87, 459, 978, 991, 1846, 1903
AlwNI CAGNNNCTG 2 cut(s) 845, 2250
Ama87I CYCGRG 2 cut(s) 23, 1985
Aor13HI TCCGGA 1 cut(s) 1075
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 1 cut(s) 1148
ApoI RAATTY 8 cut(s) 55, 433, 720, 1460, 1587, 1669, 1871, 2199
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 4 cut(s) 94, 713, 1434, 1831
AspS9I GGNCC 4 cut(s) 7, 415, 765, 1038
AsuHPI GGTGA 5 cut(s) 47, 557, 790, 803, 899
AsuII TTCGAA 1 cut(s) 990
AvaI CYCGRG 2 cut(s) 23, 1985
AvaII GGWCC 4 cut(s) 7, 415, 765, 1038
BaeGI GKGCMC 1 cut(s) 619
BaeI ACNNNNGTAYC 2 cut(s) 1900, 1933
BamHI GGATCC 1 cut(s) 983
BanII GRGCYC 3 cut(s) 1164, 1237, 1308
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 1237, 1308
BceAI ACGGC 3 cut(s) 977, 1662, 1745
BciT130I CCWGG 3 cut(s) 741, 1047, 2178
BclI TGATCA 2 cut(s) 196, 313
BcoDI GTCTC 1 cut(s) 2057
BfaI CTAG 2 cut(s) 95, 896
BfmI CTRYAG 1 cut(s) 1993
BfoI RGCGCY 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 741, 1047, 2178
Bme18I GGWCC 4 cut(s) 7, 415, 765, 1038
BmeT110I CYCGRG 2 cut(s) 23, 1985
BmgT120I GGNCC 4 cut(s) 7, 415, 765, 1038
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 3 cut(s) 741, 1047, 2178
BmrI ACTGGG 2 cut(s) 60, 1224
BmsI GCATC 7 cut(s) 616, 642, 698, 1127, 1697, 1741, 1810
BmuI ACTGGG 2 cut(s) 60, 1224
BpiI GAAGAC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 990
BpuEI CTTGAG 1 cut(s) 880
Bsa29I ATCGAT 1 cut(s) 541
BsaBI GATNNNNATC 2 cut(s) 84, 456
BsaJI CCNNGG 3 cut(s) 916, 1343, 2186
BsaWI WCCGGW 2 cut(s) 1075, 2261
Bse118I RCCGGY 1 cut(s) 1146
Bse1I ACTGG 4 cut(s) 66, 829, 1219, 1519
Bse3DI GCAATG 3 cut(s) 921, 1053, 2239
Bse8I GATNNNNATC 2 cut(s) 84, 456
BseAI TCCGGA 1 cut(s) 1075
BseBI CCWGG 3 cut(s) 741, 1047, 2178
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 3 cut(s) 916, 1343, 2186
BseGI GGATG 8 cut(s) 61, 713, 768, 1084, 1293, 1946, 2071, 2148
BseJI GATNNNNATC 2 cut(s) 84, 456
BseMI GCAATG 3 cut(s) 921, 1053, 2239
BseMII CTCAG 5 cut(s) 611, 837, 1293, 2010, 2073
BseNI ACTGG 4 cut(s) 66, 829, 1219, 1519
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 1150
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 1237, 1308
BsiHKCI CYCGRG 2 cut(s) 23, 1985
BsiSI CCGG 3 cut(s) 1076, 1147, 2262
BslFI GGGAC 1 cut(s) 1210
BsmAI GTCTC 1 cut(s) 2057
BsmBI CGTCTC 1 cut(s) 2057
BsmFI GGGAC 1 cut(s) 1210
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 1 cut(s) 1150
BsoBI CYCGRG 2 cut(s) 23, 1985
Bsp119I TTCGAA 1 cut(s) 990
Bsp1286I GDGCHC 4 cut(s) 619, 1164, 1237, 1308
Bsp13I TCCGGA 1 cut(s) 1075
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 5 cut(s) 5, 1597, 1974, 2156, 2248
BspANI GGCC 1 cut(s) 1150
BspCNI CTCAG 5 cut(s) 612, 836, 1294, 2011, 2072
BspDI ATCGAT 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 1075
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 6 cut(s) 106, 163, 370, 394, 427, 1888
BspLI GGNNCC 1 cut(s) 985
BspMAI CTGCAG 1 cut(s) 1997
BspPI GGATC 6 cut(s) 87, 459, 978, 991, 1846, 1903
BspT104I TTCGAA 1 cut(s) 990
BsrDI GCAATG 3 cut(s) 921, 1053, 2239
BsrFI RCCGGY 1 cut(s) 1146
BsrI ACTGG 4 cut(s) 66, 829, 1219, 1519
BssAI RCCGGY 1 cut(s) 1146
BssECI CCNNGG 3 cut(s) 916, 1343, 2186
BssNAI GTATAC 1 cut(s) 257
BssT1I CCWWGG 3 cut(s) 916, 1343, 2186
Bst1107I GTATAC 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 741, 1047, 2178
Bst4CI ACNGT 8 cut(s) 170, 361, 577, 661, 1022, 1448, 1906, 2035
Bst6I CTCTTC 3 cut(s) 894, 1158, 1263
BstBI TTCGAA 1 cut(s) 990
BstC8I GCNNGC 7 cut(s) 126, 942, 1144, 1148, 1772, 1833, 1997
BstDEI CTNAG 5 cut(s) 620, 823, 1302, 2019, 2059
BstDSI CCRYGG 1 cut(s) 916
BstEII GGTNACC 2 cut(s) 809, 2126
BstF5I GGATG 8 cut(s) 61, 713, 768, 1084, 1293, 1946, 2071, 2148
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 4 cut(s) 94, 713, 1434, 1831
BstMAI GTCTC 1 cut(s) 2057
BstMWI GCNNNNNNNGC 7 cut(s) 49, 635, 695, 1505, 1865, 1979, 2164
BstNI CCWGG 3 cut(s) 741, 1047, 2178
BstNSI RCATGY 6 cut(s) 128, 493, 1118, 1342, 1774, 2006
BstPI GGTNACC 2 cut(s) 809, 2126
BstSCI CCNGG 3 cut(s) 739, 1045, 2176
BstSFI CTRYAG 1 cut(s) 1993
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 253
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 983
BstXI CCANNNNNNTGG 2 cut(s) 200, 2139
BstYI RGATCY 1 cut(s) 983
BstZ17I GTATAC 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 541
BsuRI GGCC 1 cut(s) 1150
BsuTUI ATCGAT 1 cut(s) 541
BtgI CCRYGG 1 cut(s) 916
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 8 cut(s) 61, 713, 768, 1084, 1293, 1946, 2071, 2148
BtsI GCAGTG 2 cut(s) 684, 1781
BtsIMutI CAGTG 8 cut(s) 366, 617, 684, 836, 1212, 1781, 2016, 2040
Cac8I GCNNGC 7 cut(s) 126, 942, 1144, 1148, 1772, 1833, 1997
CaiI CAGNNNCTG 2 cut(s) 845, 2250
CciI TCATGA 6 cut(s) 106, 163, 370, 394, 427, 1888
CfoI GCGC 4 cut(s) 94, 713, 1434, 1831
Cfr10I RCCGGY 1 cut(s) 1146
Cfr13I GGNCC 4 cut(s) 7, 415, 765, 1038
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 1 cut(s) 1745
Csp6I GTAC 5 cut(s) 476, 1336, 1839, 1917, 2205
CspCI CAANNNNNGTGG 2 cut(s) 1201, 1236
CviQI GTAC 5 cut(s) 476, 1336, 1839, 1917, 2205
DdeI CTNAG 5 cut(s) 620, 823, 1302, 2019, 2059
DrdI GACNNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 664
Eam1104I CTCTTC 3 cut(s) 894, 1158, 1263
EarI CTCTTC 3 cut(s) 894, 1158, 1263
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 1235, 1306
Eco130I CCWWGG 3 cut(s) 916, 1343, 2186
Eco24I GRGCYC 3 cut(s) 1164, 1237, 1308
Eco47I GGWCC 4 cut(s) 7, 415, 765, 1038
Eco47III AGCGCT 1 cut(s) 93
Eco53kI GAGCTC 2 cut(s) 1235, 1306
Eco57I CTGAAG 2 cut(s) 518, 723
Eco88I CYCGRG 2 cut(s) 23, 1985
Eco91I GGTNACC 2 cut(s) 809, 2126
EcoICRI GAGCTC 2 cut(s) 1235, 1306
EcoO65I GGTNACC 2 cut(s) 809, 2126
EcoRI GAATTC 3 cut(s) 55, 720, 2199
EcoRII CCWGG 3 cut(s) 739, 1045, 2176
EcoT14I CCWWGG 3 cut(s) 916, 1343, 2186
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 3 cut(s) 1164, 1237, 1308
ErhI CCWWGG 3 cut(s) 916, 1343, 2186
Esp3I CGTCTC 1 cut(s) 2057
FaqI GGGAC 1 cut(s) 1210
FauI CCCGC 2 cut(s) 1604, 2163
FbaI TGATCA 2 cut(s) 196, 313
FblI GTMKAC 1 cut(s) 256
FokI GGATG 8 cut(s) 48, 720, 755, 1091, 1300, 1953, 2058, 2155
FriOI GRGCYC 3 cut(s) 1164, 1237, 1308
FspBI CTAG 2 cut(s) 95, 896
GlaI GCGC 4 cut(s) 93, 712, 1433, 1830
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 1 cut(s) 1150
HapII CCGG 3 cut(s) 1076, 1147, 2262
HgaI GACGC 1 cut(s) 1745
HhaI GCGC 4 cut(s) 94, 713, 1434, 1831
Hin6I GCGC 4 cut(s) 92, 711, 1432, 1829
HinP1I GCGC 4 cut(s) 92, 711, 1432, 1829
HincII GTYRAC 3 cut(s) 1264, 1483, 1644
HindII GTYRAC 3 cut(s) 1264, 1483, 1644
HpaI GTTAAC 1 cut(s) 1483
HpaII CCGG 3 cut(s) 1076, 1147, 2262
HphI GGTGA 5 cut(s) 47, 557, 790, 803, 899
Hpy166II GTNNAC 7 cut(s) 257, 1264, 1483, 1644, 1779, 1909, 2016
Hpy8I GTNNAC 7 cut(s) 257, 1264, 1483, 1644, 1779, 1909, 2016
Hpy99I CGWCG 1 cut(s) 1761
HpyCH4III ACNGT 8 cut(s) 170, 361, 577, 661, 1022, 1448, 1906, 2035
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 635, 695, 1505, 1865, 1979, 2164
HpyF3I CTNAG 5 cut(s) 620, 823, 1302, 2019, 2059
HspAI GCGC 4 cut(s) 92, 711, 1432, 1829
Kpn2I TCCGGA 1 cut(s) 1075
KroI GCCGGC 1 cut(s) 1146
KroNI GCCGGC 1 cut(s) 1148
Ksp22I TGATCA 2 cut(s) 196, 313
KspAI GTTAAC 1 cut(s) 1483
LmnI GCTCC 4 cut(s) 289, 1091, 1232, 1311
LweI GCATC 7 cut(s) 616, 642, 698, 1127, 1697, 1741, 1810
MaeI CTAG 2 cut(s) 95, 896
MaeIII GTNAC 5 cut(s) 809, 1022, 1442, 1900, 2126
MflI RGATCY 1 cut(s) 983
MhlI GDGCHC 4 cut(s) 619, 1164, 1237, 1308
MluI ACGCGT 1 cut(s) 251
MlyI GAGTC 5 cut(s) 476, 670, 921, 1670, 1997
MmeI TCCRAC 2 cut(s) 267, 1117
Mph1103I ATGCAT 1 cut(s) 1120
MroI TCCGGA 1 cut(s) 1075
MroNI GCCGGC 1 cut(s) 1146
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 6 cut(s) 1439, 1451, 1464, 1482, 1581, 2151
MslI CAYNNNNRTG 4 cut(s) 129, 198, 786, 1440
MspA1I CMGCKG 3 cut(s) 571, 974, 2250
MspI CCGG 3 cut(s) 1076, 1147, 2262
MspR9I CCNGG 3 cut(s) 741, 1047, 2178
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 3 cut(s) 741, 1047, 2178
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 7 cut(s) 49, 635, 695, 1505, 1865, 1979, 2164
NaeI GCCGGC 1 cut(s) 1148
NcoI CCATGG 1 cut(s) 916
NgoMIV GCCGGC 1 cut(s) 1146
NlaIV GGNNCC 1 cut(s) 985
NmuCI GTSAC 4 cut(s) 809, 1022, 1442, 1900
NsiI ATGCAT 1 cut(s) 1120
NspI RCATGY 6 cut(s) 128, 493, 1118, 1342, 1774, 2006
NspV TTCGAA 1 cut(s) 990
OliI CACNNNNGTG 1 cut(s) 786
PaeI GCATGC 2 cut(s) 128, 1774
PaeR7I CTCGAG 1 cut(s) 1985
PagI TCATGA 6 cut(s) 106, 163, 370, 394, 427, 1888
PciI ACATGT 2 cut(s) 489, 2002
PcsI WCGNNNNNNNCGW 1 cut(s) 2227
PctI GAATGC 1 cut(s) 1144
PdiI GCCGGC 1 cut(s) 1148
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 6 cut(s) 187, 795, 842, 904, 2068, 2112
PflMI CCANNNNNTGG 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 1045
PleI GAGTC 5 cut(s) 476, 670, 920, 1669, 1996
PpsI GAGTC 5 cut(s) 476, 670, 920, 1669, 1996
PscI ACATGT 2 cut(s) 489, 2002
Psp124BI GAGCTC 2 cut(s) 1237, 1308
Psp6I CCWGG 3 cut(s) 739, 1045, 2176
PspEI GGTNACC 2 cut(s) 809, 2126
PspGI CCWGG 3 cut(s) 739, 1045, 2176
PspN4I GGNNCC 1 cut(s) 985
PspPI GGNCC 4 cut(s) 7, 415, 765, 1038
PspXI VCTCGAGB 1 cut(s) 1985
PstI CTGCAG 1 cut(s) 1997
PstNI CAGNNNCTG 2 cut(s) 845, 2250
PsuI RGATCY 1 cut(s) 983
PvuII CAGCTG 2 cut(s) 571, 974
RsaI GTAC 5 cut(s) 477, 1337, 1840, 1918, 2206
RsaNI GTAC 5 cut(s) 476, 1336, 1839, 1917, 2205
RseI CAYNNNNRTG 4 cut(s) 129, 198, 786, 1440
SacI GAGCTC 2 cut(s) 1237, 1308
SaqAI TTAA 6 cut(s) 1439, 1451, 1464, 1482, 1581, 2151
Sau96I GGNCC 4 cut(s) 7, 415, 765, 1038
SbfI CCTGCAGG 1 cut(s) 1997
SchI GAGTC 5 cut(s) 476, 670, 921, 1670, 1997
ScrFI CCNGG 3 cut(s) 741, 1047, 2178
SdaI CCTGCAGG 1 cut(s) 1997
SduI GDGCHC 4 cut(s) 619, 1164, 1237, 1308
SfaNI GCATC 7 cut(s) 616, 642, 698, 1127, 1697, 1741, 1810
SfcI CTRYAG 1 cut(s) 1993
Sfr274I CTCGAG 1 cut(s) 1985
SfuI TTCGAA 1 cut(s) 990
SinI GGWCC 4 cut(s) 7, 415, 765, 1038
SlaI CTCGAG 1 cut(s) 1985
SmiMI CAYNNNNRTG 4 cut(s) 129, 198, 786, 1440
SmlI CTYRAG 2 cut(s) 859, 1985
SmoI CTYRAG 2 cut(s) 859, 1985
SphI GCATGC 2 cut(s) 128, 1774
Sse8387I CCTGCAGG 1 cut(s) 1997
SsiI CCGC 5 cut(s) 5, 1597, 1974, 2156, 2248
SspMI CTAG 2 cut(s) 95, 896
SstI GAGCTC 2 cut(s) 1237, 1308
StyD4I CCNGG 3 cut(s) 739, 1045, 2176
StyI CCWWGG 3 cut(s) 916, 1343, 2186
TaaI ACNGT 8 cut(s) 170, 361, 577, 661, 1022, 1448, 1906, 2035
TaqI TCGA 8 cut(s) 541, 610, 990, 1003, 1164, 1542, 1986, 2170
TatI WGTACW 1 cut(s) 1335
TauI GCSGC 2 cut(s) 1976, 2250
TfiI GAWTC 6 cut(s) 187, 795, 842, 904, 2068, 2112
Tru1I TTAA 6 cut(s) 1439, 1451, 1464, 1482, 1581, 2151
Tru9I TTAA 6 cut(s) 1439, 1451, 1464, 1482, 1581, 2151
TscAI CASTG 8 cut(s) 366, 624, 691, 836, 1219, 1781, 2023, 2040
TseFI GTSAC 4 cut(s) 809, 1022, 1442, 1900
Tsp45I GTSAC 4 cut(s) 809, 1022, 1442, 1900
TspGWI ACGGA 2 cut(s) 1298, 1844
TspRI CASTG 8 cut(s) 366, 624, 691, 836, 1219, 1781, 2023, 2040
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 4 cut(s) 7, 415, 765, 1038
XapI RAATTY 8 cut(s) 55, 433, 720, 1460, 1587, 1669, 1871, 2199
XceI RCATGY 6 cut(s) 128, 493, 1118, 1342, 1774, 2006
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XhoI CTCGAG 1 cut(s) 1985
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 2 cut(s) 95, 896
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.