Rw3G002170

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000251
Physical Location & Seq
Forward (+)
1924305 .. 1928361
4057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002170.1

Sequence Viewer

Length: 2262 bp
ATGGCTAGCCATGATTTGATACTTGGACAAAATCCCAATATCGCACTTGGGCAGAATCAGCAGATACTGGGCCACAACCATAGCCTAGGCACTCATGACCATCATCTGGGCTCAGCACAAGCTCATGAGCATCACTTGGATATGGGAGATAACAGACATGACCTGGGTTCAGACCATCCTCATGACCACGAGTTGGGTTTAGAACAGGACCATGACCAAGATGGAGATGATGTTCACAGCTACAGACATGAAAATGAGTTAGGTATGGATCGGAAACCTGATCTGGATGACCATGGATTGTCTCTTCCTCCTCAGAACCATGACTTGGTTTTGGGAGAGAATAATGAGCTGGCTGTCTCAGACGACCAAGAACTTGAAGGAAATATGGAACTGGCCATGGATCAAAATCATGAAATGGGCATAGAATCCATGCATGATATGAGTATCCAGGACTCCCAGCTGGCACTTAGTCCCAATCCCGTACTTCAGGCTCGTATGGCTGTTGCAAATCCTCACTATGAGTTGGTAGTGGGGCAAGAGTTCCCTGATGTCAAGAGCTGTCGGAGAGCTTTGAGGGATACAGCTATTGCCTTACACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCCAAGTGTGCCAGTGAGGGATGCCCATGGCGTATTCATGCTGCAAAGCTCCCAGGAGTTCCAACTTTCACAATCAGGACCATCCACGAGACTCATACATGTGGAGGAATTTATCATCTTGGTCATCAGCAAGCCTCCGTTCAATGGGTTGCAAATTCTGTGGAGCAACGGCTTAGAGAGAACCCTAATTACAAGCCAAAGGAGATACTGGAGGAAATTCACCGAGTTCATGGTATCACCTTATCCTACAAGCAAGCTTGGCGTGGCAAGGAGCGCATCATGGCAGCAATGCGTGGATCATTTGAAGAAGGGTATCGCTTGCTTCCAGAATATTGTGAACAGGTCAAACGAACAAACCCGGGGAGCATTGCATCTGTTTATGGAAACCCGAGTGATAACTGCTTCCAGCGTCTCTTTATATCATTTCAGGCATCAATTTATGGTTTCCTAAATGCTTGTCGGCCCCTCCTTGGGCTTGATAGGACATATCTGAAAAGTAAGTATCTGGGTACTTTGCTTCTTGCTACTGGTTTCGATGGAGATGGTGCTCTATTTCCTCTGGCATTTGGGGTTGTGGATGAGGAGAGTGATGATAATTGGATGTGGTTTCTTTCTGAGCTTCATAATCTGCTTGAGCTTAATTCAGAAAACATGCCTAGGCTTACAATTTTGTCAGACAGGCAGAAGGGCATTGTAGATGGAGTTGAAGTAAATTTTCCTACTGCTTTTCATGGATTTTGCATGCGTCACCTGAGTGATAGCTTTCGTAAGGAGTTTAATAATACAATGCTCGTTAATCTTTTATGGGAAGCTGCTCATGCTCTCACTGTAATTGAATTTGAAGCAAAAATTTTAGAGATAGAAGAGATATCTCAAGATGCTGCATATTGGATCAGACGGATTCCACCTCGCTTATGGGCAACTGCTTATTTTGAGGGAACACGTTTTGGGCATTTGACAGCCAATATAGTTGAATCTTTAAATACTTGGATATTGGAGGCCTCTGGGCTTCCAATAATTCAGATGATGGAGTGCATCAGAAGGCAGCTAATGACTTGGTTCAATGAACGTCGAGAGACCAGTATGCAATGGACATCGATTCTTGTTCCTTCCGCAGAGAGGCGTGTTGCGGAGGCTCTTGAGCGTGGGCGCACTTATCAGGTACTTCGTGCTAATGAAGCTGAATTTGAAGTGATATCTCATGAAGGGACAAATATAGTGGACATTCGAAACCGTTGCTGCCTTTGTCGTGGCTGGCAGCTTTATGGTTTGCCATGTGCCCATGCTGTTGCAGCACTTTTATCTTGCAGGCAGCAAGTCCATCGATTTACTGAGAGCTGCTTCACAGTTGCAACCTATCGGAAGACATACTCACAAACAATACATCCAATTCCAGATAAATCCCTATGGGCAGAGGCATCAAGGATTGAGGGAGAAGATCCCAATGCAAGCAATGCTCTTTCTGAGGTTCTAATCAACCCTCCCAAGTCACTCCGGCCACCAGGTCGACCAAGAAAGAAGCGTGTTCGAGCAGAGGACCGTGGCCGAGTGAAGCGAGTTGTGCATTGTAGTCGCTGCAACCAAACAGGCCACTTCAGAACCACATGTGCAGCCCCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

753

Amino Acids

85.62

Weight (kDa)

5.98

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 174 - 238 1.2e-27 MuDR family transposase
MULE PF10551 370 - 465 3.7e-19 MULE transposase domain
SWIM PF04434 620 - 649 4e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 106, 193, 325
AccI GTMKAC 1 cut(s) 2146
AciI CCGC 2 cut(s) 1752, 1769
AclWI GGATC 5 cut(s) 276, 408, 943, 1538, 2072
AcoI YGGCCR 3 cut(s) 393, 2135, 2182
AcsI RAATTY 7 cut(s) 747, 793, 855, 1351, 1475, 1488, 1823
AcuI CTGAAG 2 cut(s) 470, 2218
AfaI GTAC 3 cut(s) 483, 1150, 1803
AfiI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 783, 1109, 1110, 1758
AflIII ACRYGT 3 cut(s) 737, 1580, 2243
AjnI CCWGG 4 cut(s) 162, 447, 691, 2140
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 1392
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
Alw21I GWGCWC 1 cut(s) 1189
Alw26I GTCTC 5 cut(s) 306, 361, 722, 1055, 1709
AlwI GGATC 5 cut(s) 276, 408, 943, 1538, 2072
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 2 cut(s) 997, 1027
AoxI GGCC 7 cut(s) 70, 393, 1100, 1638, 2135, 2182, 2227
ApoI RAATTY 7 cut(s) 747, 793, 855, 1351, 1475, 1488, 1823
AspA2I CCTAGG 2 cut(s) 85, 1295
AspLEI GCGC 2 cut(s) 915, 1791
AspS9I GGNCC 5 cut(s) 70, 208, 717, 1101, 2176
AsuC2I CCSGG 2 cut(s) 998, 999
AsuHPI GGTGA 3 cut(s) 851, 868, 1379
AsuII TTCGAA 1 cut(s) 1867
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 2 cut(s) 997, 1027
AvaII GGWCC 3 cut(s) 208, 717, 2176
AvrII CCTAGG 2 cut(s) 85, 1295
BaeGI GKGCMC 1 cut(s) 1921
BalI TGGCCA 1 cut(s) 395
BanII GRGCYC 1 cut(s) 113
BauI CACGAG 2 cut(s) 188, 725
BbsI GAAGAC 1 cut(s) 2009
Bbv12I GWGCWC 1 cut(s) 1189
BccI CCATC 9 cut(s) 108, 183, 215, 728, 1169, 1175, 1331, 1660, 1968
BceAI ACGGC 1 cut(s) 824
BcgI CGANNNNNNTGC 6 cut(s) 1857, 1891, 1943, 1977, 2192, 2226
BciT130I CCWGG 4 cut(s) 164, 449, 693, 2142
BciVI GTATCC 2 cut(s) 455, 571
BcnI CCSGG 2 cut(s) 998, 999
BcoDI GTCTC 5 cut(s) 306, 361, 722, 1055, 1709
BfaI CTAG 3 cut(s) 6, 86, 1296
BfmI CTRYAG 1 cut(s) 241
BfuI GTATCC 2 cut(s) 455, 571
BlnI CCTAGG 2 cut(s) 85, 1295
BlpI GCTNAGC 1 cut(s) 112
Bme1390I CCNGG 6 cut(s) 164, 449, 693, 998, 999, 2142
Bme18I GGWCC 3 cut(s) 208, 717, 2176
BmeT110I CYCGRG 2 cut(s) 997, 1027
BmgT120I GGNCC 5 cut(s) 70, 208, 717, 1101, 2176
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 6 cut(s) 164, 449, 693, 998, 999, 2142
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 8 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683, 2066
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 2009
BpmI CTGGAG 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 1867
BpuEI CTTGAG 3 cut(s) 1292, 1497, 1799
BpuMI CCSGG 2 cut(s) 998, 999
Bsa29I ATCGAT 2 cut(s) 1736, 1963
BsaBI GATNNNNATC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 1709
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 1332, 1362
Bsc4I CCNNNNNNNGG 7 cut(s) 106, 193, 325, 783, 1109, 1110, 1758
Bse1I ACTGG 6 cut(s) 72, 396, 651, 852, 1171, 1719
Bse3DI GCAATG 4 cut(s) 933, 1005, 1733, 2098
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 4 cut(s) 164, 449, 693, 2142
BseCI ATCGAT 2 cut(s) 1736, 1963
BseGI GGATG 7 cut(s) 175, 292, 665, 720, 1222, 1245, 2023
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 783, 1109, 1110, 1758
BseMI GCAATG 4 cut(s) 933, 1005, 1733, 2098
BseMII CTCAG 7 cut(s) 126, 326, 372, 1245, 1382, 1962, 2094
BseNI ACTGG 6 cut(s) 72, 396, 651, 852, 1171, 1719
BseRI GAGGAG 2 cut(s) 300, 1235
BseSI GKGCMC 1 cut(s) 1921
BseYI CCCAGC 1 cut(s) 456
BshFI GGCC 7 cut(s) 72, 395, 1102, 1640, 2137, 2184, 2229
BshVI ATCGAT 2 cut(s) 1736, 1963
BsiHKAI GWGCWC 1 cut(s) 1189
BsiHKCI CYCGRG 2 cut(s) 997, 1027
BsiSI CCGG 2 cut(s) 998, 2134
BslFI GGGAC 2 cut(s) 456, 1861
BslI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 783, 1109, 1110, 1758
BsmAI GTCTC 5 cut(s) 306, 361, 722, 1055, 1709
BsmBI CGTCTC 1 cut(s) 1055
BsmFI GGGAC 2 cut(s) 456, 1861
BsnI GGCC 7 cut(s) 72, 395, 1102, 1640, 2137, 2184, 2229
Bso31I GGTCTC 1 cut(s) 1709
BsoBI CYCGRG 2 cut(s) 997, 1027
Bsp119I TTCGAA 1 cut(s) 1867
Bsp1286I GDGCHC 3 cut(s) 113, 1189, 1921
Bsp143I GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
Bsp1720I GCTNAGC 1 cut(s) 112
Bsp19I CCATGG 3 cut(s) 292, 396, 665
BspACI CCGC 2 cut(s) 1752, 1769
BspANI GGCC 7 cut(s) 72, 395, 1102, 1640, 2137, 2184, 2229
BspCNI CTCAG 7 cut(s) 125, 325, 371, 1246, 1383, 1963, 2095
BspDI ATCGAT 2 cut(s) 1736, 1963
BspHI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
BspLI GGNNCC 1 cut(s) 1103
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 5 cut(s) 276, 408, 943, 1538, 2072
BspT104I TTCGAA 1 cut(s) 1867
BspTNI GGTCTC 1 cut(s) 1709
BsrDI GCAATG 4 cut(s) 933, 1005, 1733, 2098
BsrI ACTGG 6 cut(s) 72, 396, 651, 852, 1171, 1719
BssMI GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
BssSI CACGAG 2 cut(s) 188, 725
BssT1I CCWWGG 6 cut(s) 85, 292, 396, 665, 1108, 1295
Bst2BI CACGAG 2 cut(s) 188, 725
Bst2UI CCWGG 4 cut(s) 164, 449, 693, 2142
Bst4CI ACNGT 4 cut(s) 1468, 1874, 1987, 2180
Bst6I CTCTTC 2 cut(s) 309, 1497
BstAPI GCANNNNNTGC 1 cut(s) 2093
BstBI TTCGAA 1 cut(s) 1867
BstDEI CTNAG 9 cut(s) 112, 312, 358, 467, 812, 1254, 1391, 1971, 2103
BstDSI CCRYGG 4 cut(s) 292, 396, 665, 2179
BstF5I GGATG 7 cut(s) 175, 292, 665, 720, 1222, 1245, 2023
BstHHI GCGC 2 cut(s) 915, 1791
BstKTI GATC 6 cut(s) 271, 283, 403, 938, 1533, 2080
BstMAI GTCTC 5 cut(s) 306, 361, 722, 1055, 1709
BstMBI GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
BstNI CCWGG 4 cut(s) 164, 449, 693, 2142
BstNSI RCATGY 4 cut(s) 741, 1294, 1384, 2247
BstSCI CCNGG 6 cut(s) 162, 447, 691, 996, 997, 2140
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 1921
BstV2I GAAGAC 1 cut(s) 2009
BstX2I RGATCY 1 cut(s) 2077
BstYI RGATCY 1 cut(s) 2077
Bsu15I ATCGAT 2 cut(s) 1736, 1963
BsuI GTATCC 2 cut(s) 455, 571
BsuRI GGCC 7 cut(s) 72, 395, 1102, 1640, 2137, 2184, 2229
BsuTUI ATCGAT 2 cut(s) 1736, 1963
BtgI CCRYGG 4 cut(s) 292, 396, 665, 2179
BtsCI GGATG 7 cut(s) 175, 292, 665, 720, 1222, 1245, 2023
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 636, 658, 1464
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
CfoI GCGC 2 cut(s) 915, 1791
Cfr13I GGNCC 5 cut(s) 70, 208, 717, 1101, 2176
Cfr9I CCCGGG 1 cut(s) 997
ClaI ATCGAT 2 cut(s) 1736, 1963
CseI GACGC 2 cut(s) 1037, 1373
CsiI ACCWGGT 1 cut(s) 2140
Csp6I GTAC 3 cut(s) 482, 1149, 1802
CspCI CAANNNNNGTGG 4 cut(s) 780, 815, 1839, 1874
CviQI GTAC 3 cut(s) 482, 1149, 1802
DdeI CTNAG 9 cut(s) 112, 312, 358, 467, 812, 1254, 1391, 1971, 2103
DpnI GATC 6 cut(s) 270, 282, 402, 937, 1532, 2079
DpnII GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
DraI TTTAAA 1 cut(s) 1620
EaeI YGGCCR 3 cut(s) 393, 2135, 2182
Eam1104I CTCTTC 2 cut(s) 309, 1497
EarI CTCTTC 2 cut(s) 309, 1497
Eco130I CCWWGG 6 cut(s) 85, 292, 396, 665, 1108, 1295
Eco147I AGGCCT 1 cut(s) 1640
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 1709
Eco32I GATATC 2 cut(s) 1509, 1836
Eco47I GGWCC 3 cut(s) 208, 717, 2176
Eco57I CTGAAG 2 cut(s) 470, 2218
Eco88I CYCGRG 2 cut(s) 997, 1027
EcoRII CCWGG 4 cut(s) 162, 447, 691, 2140
EcoRV GATATC 2 cut(s) 1509, 1836
EcoT14I CCWWGG 6 cut(s) 85, 292, 396, 665, 1108, 1295
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 6 cut(s) 85, 292, 396, 665, 1108, 1295
Esp3I CGTCTC 1 cut(s) 1055
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 2 cut(s) 456, 1861
FblI GTMKAC 1 cut(s) 2146
FokI GGATG 7 cut(s) 162, 299, 672, 707, 1229, 1252, 2010
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 3 cut(s) 6, 86, 1296
GlaI GCGC 2 cut(s) 914, 1790
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 7 cut(s) 72, 395, 1102, 1640, 2137, 2184, 2229
HapII CCGG 2 cut(s) 998, 2134
HgaI GACGC 2 cut(s) 1037, 1373
HhaI GCGC 2 cut(s) 915, 1791
Hin6I GCGC 2 cut(s) 913, 1789
HinP1I GCGC 2 cut(s) 913, 1789
HincII GTYRAC 1 cut(s) 2147
HindII GTYRAC 1 cut(s) 2147
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 8 cut(s) 55, 425, 452, 628, 730, 1540, 1613, 1738
HpaII CCGG 2 cut(s) 998, 2134
HphI GGTGA 3 cut(s) 851, 868, 1379
Hpy166II GTNNAC 4 cut(s) 235, 977, 1861, 2147
Hpy8I GTNNAC 4 cut(s) 235, 977, 1861, 2147
Hpy99I CGWCG 1 cut(s) 1713
HpyAV CCTTC 6 cut(s) 371, 941, 1318, 1674, 1758, 1838
HpyCH4III ACNGT 4 cut(s) 1468, 1874, 1987, 2180
HpyCH4IV ACGT 2 cut(s) 1582, 1708
HpyF3I CTNAG 9 cut(s) 112, 312, 358, 467, 812, 1254, 1391, 1971, 2103
HpySE526I ACGT 2 cut(s) 1582, 1708
HspAI GCGC 2 cut(s) 913, 1789
Kzo9I GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
LmnI GCTCC 4 cut(s) 693, 802, 910, 1002
LweI GCATC 8 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683, 2066
MabI ACCWGGT 1 cut(s) 2140
MaeI CTAG 3 cut(s) 6, 86, 1296
MaeII ACGT 2 cut(s) 1582, 1708
MaeIII GTNAC 2 cut(s) 1385, 2127
MalI GATC 6 cut(s) 270, 282, 402, 937, 1532, 2079
MboI GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
MboII GAAGA 5 cut(s) 296, 956, 1514, 2014, 2087
MflI RGATCY 1 cut(s) 2077
MhlI GDGCHC 3 cut(s) 113, 1189, 1921
MlsI TGGCCA 1 cut(s) 395
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 3 cut(s) 446, 622, 724
MmeI TCCRAC 2 cut(s) 542, 725
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 435
MscI TGGCCA 1 cut(s) 395
MseI TTAA 5 cut(s) 615, 1278, 1416, 1434, 1619
MslI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
Msp20I TGGCCA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 2 cut(s) 998, 2134
MspR9I CCNGG 6 cut(s) 164, 449, 693, 998, 999, 2142
MvaI CCWGG 4 cut(s) 164, 449, 693, 2142
NciI CCSGG 2 cut(s) 998, 999
NcoI CCATGG 3 cut(s) 292, 396, 665
NdeII GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 1103
NmeAIII GCCGAG 1 cut(s) 2210
NmuCI GTSAC 2 cut(s) 1385, 2127
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 4 cut(s) 741, 1294, 1384, 2247
NspV TTCGAA 1 cut(s) 1867
OliI CACNNNNGTG 1 cut(s) 1392
PaeI GCATGC 1 cut(s) 1384
PagI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
PceI AGGCCT 1 cut(s) 1640
PciI ACATGT 2 cut(s) 737, 2243
PfeI GAWTC 5 cut(s) 55, 425, 1540, 1613, 1738
PflMI CCANNNNNTGG 3 cut(s) 106, 193, 325
PfoI TCCNGGA 1 cut(s) 447
PleI GAGTC 3 cut(s) 446, 622, 724
PpsI GAGTC 3 cut(s) 446, 622, 724
PscI ACATGT 2 cut(s) 737, 2243
Psp6I CCWGG 4 cut(s) 162, 447, 691, 2140
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 4 cut(s) 162, 447, 691, 2140
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 5 cut(s) 70, 208, 717, 1101, 2176
PsrI GAACNNNNNNTAC 2 cut(s) 812, 844
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 2077
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 3 cut(s) 483, 1150, 1803
RsaNI GTAC 3 cut(s) 482, 1149, 1802
RseI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
SalI GTCGAC 1 cut(s) 2145
SaqAI TTAA 5 cut(s) 615, 1278, 1416, 1434, 1619
Sau3AI GATC 6 cut(s) 268, 280, 400, 935, 1530, 2077
Sau96I GGNCC 5 cut(s) 70, 208, 717, 1101, 2176
SchI GAGTC 3 cut(s) 446, 622, 724
ScrFI CCNGG 6 cut(s) 164, 449, 693, 998, 999, 2142
SduI GDGCHC 3 cut(s) 113, 1189, 1921
SexAI ACCWGGT 1 cut(s) 2140
SfaNI GCATC 8 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683, 2066
SfcI CTRYAG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 1867
SinI GGWCC 3 cut(s) 208, 717, 2176
SmaI CCCGGG 1 cut(s) 999
SmiMI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
SmlI CTYRAG 3 cut(s) 1271, 1512, 1778
SmoI CTYRAG 3 cut(s) 1271, 1512, 1778
SphI GCATGC 1 cut(s) 1384
SseBI AGGCCT 1 cut(s) 1640
SsiI CCGC 2 cut(s) 1752, 1769
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 6, 86, 1296
StuI AGGCCT 1 cut(s) 1640
StyD4I CCNGG 6 cut(s) 162, 447, 691, 996, 997, 2140
StyI CCWWGG 6 cut(s) 85, 292, 396, 665, 1108, 1295
TaaI ACNGT 4 cut(s) 1468, 1874, 1987, 2180
TaiI ACGT 2 cut(s) 1585, 1711
TaqI TCGA 7 cut(s) 1173, 1711, 1736, 1867, 1963, 2146, 2167
TfiI GAWTC 5 cut(s) 55, 425, 1540, 1613, 1738
Tru1I TTAA 5 cut(s) 615, 1278, 1416, 1434, 1619
Tru9I TTAA 5 cut(s) 615, 1278, 1416, 1434, 1619
TscAI CASTG 3 cut(s) 643, 658, 1471
TseFI GTSAC 2 cut(s) 1385, 2127
Tsp45I GTSAC 2 cut(s) 1385, 2127
TspDTI ATGAA 9 cut(s) 264, 426, 665, 857, 1250, 1358, 1719, 1830, 1857
TspGWI ACGGA 2 cut(s) 766, 1552
TspMI CCCGGG 1 cut(s) 997
TspRI CASTG 3 cut(s) 643, 658, 1471
Van91I CCANNNNNTGG 3 cut(s) 106, 193, 325
VpaK11BI GGWCC 3 cut(s) 208, 717, 2176
XapI RAATTY 7 cut(s) 747, 793, 855, 1351, 1475, 1488, 1823
XceI RCATGY 4 cut(s) 741, 1294, 1384, 2247
XcmI CCANNNNNNNNNTGG 2 cut(s) 218, 1551
XmaI CCCGGG 1 cut(s) 997
XmaJI CCTAGG 2 cut(s) 85, 1295
XmiI GTMKAC 1 cut(s) 2146
XspI CTAG 3 cut(s) 6, 86, 1296
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.