Rorug02G0627400

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Forward (+)
74263333 .. 74267396
4064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0627400.1

Sequence Viewer

Length: 2019 bp
ATGTTGGCTACGAGGAACCTCCGCAGACATTGCTTCAAGTCCCTCTCTTCTCTCCTCCAATTCAATCCCTCCAAGAATGTCTCGTCTTTAAGAGATGTCGGTCCTAAACTGATCTCGAGCAATGTGGTTCGGCTTAGTAGAGCTAGTGAAGATTGTGTTTTTTCTTCATCTTCACCATTCCATCCCTTGGATGGGTGGTCCCGGCCAATGTCCACACATAGGGGGTCGCCATCATCTAGAGGTTCGGCATCTAAAGGGAGGGGCATGAGAAGCAAAGTAGCGAGGCGGGTGGAAAAGGAGACTGGTAAAACTCAAAAAGAGGTTCAGAGGGCAAATAAGATTCGAAAGAAGCTGATGACTGAAAACGAGAGGCGCATTTACAACCTCAAAAGGGCCAAGAGAAAAGTGGCATTGCTACTACAGAAGCTCAAAAAATATGAGCTTCCAGATCTGCCAGCTCCCCGACATGATCCGGAGCTGTTTACCCTAGAGCAGCTTCAAGCATTTAAGAAGATTGGCTTCAGAAACAAAAACTATGTTCCTGTTGGTGTTCGTGGGGTCTTTGGAGGAGTTGTCCAGAATATGCACATGCACTGGAAGTTTCACGAGACCGTACAAGTTTGTTGTGATAACTTCCCTAAGGAGAAAATCAAGGAAATGGCAACAATGCTTGCAAGGCTGAGTGGTGGTATTGTGATAAATATACATAATACAAAAACAATCATCATGTTTCGTGGAAGAAATTACCGTCAGCCTAAAAATTTGATACCTTTCAATACCCTTACGAAAAGGAAGGCATTATTCAAGGCCAGATTTGAACAAGCTCTTGAGTCGCAGAAGCTAAACATTAAGAAGATAGAACAGGAGCTACGCAGAAGTGGTGTTAATCCTGAGGATCCAGTTGCTATGGCCAGTATCCAGAGAGTCGCCTCCTCATTCTTCAATGCAATTGATCAGAAGGAGGGGAGTCCTTATGTATTCCATGGGGATAAGCTGTCACTAGCAGAGACTGATAACAAATTGAGACATTTAGAACCTCCCGATCAAAATGAGCAGGAGGAGTTAGACAAGTTCATCTCTGAGATTGAAAATGCAGCTGAACGCGAGTGGGCTGCTGAGGAAGCAGCAGAGAAAGAAGAGTTTACCCGATTAAGGTATTGGAACAAAGAAGAATTTGGGGGGAGATACAGAAGATCTGAACCACTTGAAAATGACAGCTCTGATGATGAGACAAAAAGGACAAGGGATCGGAGGGATACACGTGGCAAGCAGATGCCTGTTGATAGTGATTATGAAGATGACGAGGGGGAATATTCTAATAGTGTCGCGCATACTAGTGTTTTTGACAGTGATGCTGATGATTCTGATGGAATGCAAGAGAATTTCAAGGCATCTGCAATTGACAGGGTAAAGCAATATCAGATTGGGAGGGGAAAAAATGATGGACACTTCAAGAAAAGTGTTAAAGCTAATAATAGAAAGATCATGGCAGATGAACGTACTGAATCAGAAAACACATTCAGTGATCTTGAAAATGCAATGTGGCATTCCGATGATGAGGAAGAGCAGGCATCAACACCATCAAGAGCTGTGAAATATGATTACCGAAGCAGCAGTGATGACGAAGAGGACTTAAAGTTAAATTATGTGAAGTCAGAAAAGAAGCAGCAGGTAGATAATGCTGATGATTCCGATGAAGCTCATGACAAATTCAAGTTATCAAGTGGTGCAAAGGGGAAGCATGCCAGTGAATATTTAAAAGGAGAGGCTGATTTTAACATAAGAAGAGAGTTGATTGAAGAAGACTTGGAGTCAGACGATCTGTTCAGTGATGATGAAACTGCAATGTGGGAATCAGAGGCAGTGAAAGATTCACGGGCATCAACTGTGGGAAAATACAATTACAGGAGCAGTGAAAAAGAGGATTATCCAGTAAGAAGAGAAGAGAAGGGCAACGGGGATGATGTCAAGCGGACAAGGACGCCAAAAGAGTTGGATGAGATTTGGGACAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

672

Amino Acids

77.51

Weight (kDa)

6.99

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 163 - 245 1.1e-13 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1660
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 2 cut(s) 1104, 1328
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 3 cut(s) 22, 286, 1972
AclWI GGATC 4 cut(s) 464, 890, 903, 1254
AcoI YGGCCR 2 cut(s) 203, 909
AcsI RAATTY 4 cut(s) 760, 1172, 1381, 1709
AcuI CTGAAG 1 cut(s) 505
AcvI CACGTG 1 cut(s) 1262
AcyI GRCGYC 1 cut(s) 1982
AfaI GTAC 2 cut(s) 615, 1501
AfiI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
AflIII ACRYGT 1 cut(s) 1259
AhdI GACNNNNNGTC 1 cut(s) 1810
AhlI ACTAGT 1 cut(s) 1334
Alw26I GTCTC 6 cut(s) 85, 293, 602, 1001, 1018, 1223
AlwI GGATC 4 cut(s) 464, 890, 903, 1254
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 4 cut(s) 203, 393, 807, 909
ApeKI GCWGC 6 cut(s) 493, 1094, 1112, 1124, 1611, 1666
ApoI RAATTY 4 cut(s) 760, 1172, 1381, 1709
AspLEI GCGC 2 cut(s) 375, 1330
AspS9I GGNCC 3 cut(s) 101, 198, 393
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 101, 198
AxyI CCTNAGG 2 cut(s) 639, 891
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 895
BauI CACGAG 1 cut(s) 605
BbrPI CACGTG 1 cut(s) 1262
BbsI GAAGAC 1 cut(s) 1809
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 6 cut(s) 505, 1099, 1106, 1136, 1623, 1678
BccI CCATC 6 cut(s) 185, 189, 238, 1361, 1436, 1588
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciVI GTATCC 2 cut(s) 926, 1249
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 6 cut(s) 85, 293, 602, 1001, 1018, 1223
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 5 cut(s) 144, 237, 488, 1001, 1335
BfmI CTRYAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 1660
BfuI GTATCC 2 cut(s) 926, 1249
BglII AGATCT 2 cut(s) 448, 1193
BisI GCNGC 6 cut(s) 494, 1095, 1113, 1125, 1612, 1667
BlsI GCNGC 6 cut(s) 495, 1096, 1114, 1126, 1613, 1668
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 2 cut(s) 101, 198
BmeRI GACNNNNNGTC 1 cut(s) 1810
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 101, 198, 393
BmiI GGNNCC 3 cut(s) 17, 200, 897
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1580, 1889
BpiI GAAGAC 1 cut(s) 1809
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 1262
BsaHI GRCGYC 1 cut(s) 1982
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 186, 982
BsaWI WCCGGW 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
Bse1I ACTGG 6 cut(s) 307, 599, 899, 912, 1746, 1931
Bse21I CCTNAGG 2 cut(s) 639, 891
Bse3DI GCAATG 5 cut(s) 28, 127, 410, 1545, 1851
BseAI TCCGGA 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 186, 982
BseGI GGATG 4 cut(s) 181, 196, 1966, 2002
BseLI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
BseMI GCAATG 5 cut(s) 28, 127, 410, 1545, 1851
BseMII CTCAG 4 cut(s) 671, 882, 1071, 1107
BseNI ACTGG 6 cut(s) 307, 599, 899, 912, 1746, 1931
BseRI GAGGAG 4 cut(s) 44, 582, 922, 1073
BseXI GCAGC 6 cut(s) 505, 1099, 1106, 1136, 1623, 1678
Bsh1236I CGCG 2 cut(s) 1104, 1328
BshFI GGCC 4 cut(s) 205, 395, 809, 911
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 202, 473
BslFI GGGAC 2 cut(s) 25, 184
BslI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
BsmAI GTCTC 6 cut(s) 85, 293, 602, 1001, 1018, 1223
BsmFI GGGAC 2 cut(s) 25, 184
BsmI GAATGC 2 cut(s) 1377, 1546
BsnI GGCC 4 cut(s) 205, 395, 809, 911
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 343
Bsp13I TCCGGA 1 cut(s) 472
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 3 cut(s) 22, 286, 1972
BspANI GGCC 4 cut(s) 205, 395, 809, 911
BspCNI CTCAG 4 cut(s) 672, 883, 1072, 1108
BspEI TCCGGA 1 cut(s) 472
BspFNI CGCG 2 cut(s) 1104, 1328
BspHI TCATGA 1 cut(s) 1702
BspLI GGNNCC 3 cut(s) 17, 200, 897
BspMI ACCTGC 1 cut(s) 1660
BspPI GGATC 4 cut(s) 464, 890, 903, 1254
BspQI GCTCTTC 1 cut(s) 1557
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 5 cut(s) 28, 127, 410, 1545, 1851
BsrI ACTGG 6 cut(s) 307, 599, 899, 912, 1746, 1931
BssECI CCNNGG 2 cut(s) 186, 982
BssNI GRCGYC 1 cut(s) 1982
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 2 cut(s) 186, 982
Bst2BI CACGAG 1 cut(s) 605
Bst4CI ACNGT 5 cut(s) 613, 749, 1349, 1888, 2012
Bst6I CTCTTC 7 cut(s) 52, 1131, 1557, 1620, 1780, 1933, 1938
BstACI GRCGYC 1 cut(s) 1982
BstAPI GCANNNNNTGC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 5 cut(s) 456, 672, 1268, 1569, 1743
BstDEI CTNAG 6 cut(s) 134, 639, 680, 891, 1080, 1116
BstDSI CCRYGG 1 cut(s) 982
BstF5I GGATG 4 cut(s) 181, 196, 1966, 2002
BstFNI CGCG 2 cut(s) 1104, 1328
BstHHI GCGC 2 cut(s) 375, 1330
BstMAI GTCTC 6 cut(s) 85, 293, 602, 1001, 1018, 1223
BstMWI GCNNNNNNNGC 4 cut(s) 30, 270, 676, 1121
BstNSI RCATGY 2 cut(s) 592, 1745
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 2 cut(s) 1104, 1328
BstV1I GCAGC 6 cut(s) 505, 1099, 1106, 1136, 1623, 1678
BstV2I GAAGAC 1 cut(s) 1809
BstX2I RGATCY 3 cut(s) 448, 895, 1193
BstYI RGATCY 3 cut(s) 448, 895, 1193
Bsu36I CCTNAGG 2 cut(s) 639, 891
BsuI GTATCC 2 cut(s) 926, 1249
BsuRI GGCC 4 cut(s) 205, 395, 809, 911
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 4 cut(s) 181, 196, 1966, 2002
BtsI GCAGTG 3 cut(s) 1621, 1869, 1918
BtsIMutI CAGTG 9 cut(s) 592, 1354, 1528, 1621, 1753, 1834, 1869, 1918, 2017
BveI ACCTGC 1 cut(s) 1660
Cac8I GCNNGC 5 cut(s) 456, 672, 1268, 1569, 1743
CaiI CAGNNNCTG 1 cut(s) 1010
CciI TCATGA 1 cut(s) 1702
CfoI GCGC 2 cut(s) 375, 1330
Cfr13I GGNCC 3 cut(s) 101, 198, 393
CseI GACGC 1 cut(s) 1990
Csp6I GTAC 2 cut(s) 614, 1500
CviAII CATG 8 cut(s) 265, 467, 589, 727, 983, 1486, 1703, 1742
CviQI GTAC 2 cut(s) 614, 1500
DdeI CTNAG 6 cut(s) 134, 639, 680, 891, 1080, 1116
DraI TTTAAA 1 cut(s) 1758
DriI GACNNNNNGTC 1 cut(s) 1810
EaeI YGGCCR 2 cut(s) 203, 909
Eam1104I CTCTTC 7 cut(s) 52, 1131, 1557, 1620, 1780, 1933, 1938
Eam1105I GACNNNNNGTC 1 cut(s) 1810
EarI CTCTTC 7 cut(s) 52, 1131, 1557, 1620, 1780, 1933, 1938
Eco130I CCWWGG 2 cut(s) 186, 982
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 101, 198
Eco57I CTGAAG 1 cut(s) 505
Eco72I CACGTG 1 cut(s) 1262
Eco81I CCTNAGG 2 cut(s) 639, 891
Eco88I CYCGRG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 186, 982
ErhI CCWWGG 2 cut(s) 186, 982
FaeI CATG 8 cut(s) 268, 470, 592, 730, 986, 1489, 1706, 1745
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 2 cut(s) 25, 184
FatI CATG 8 cut(s) 264, 466, 588, 726, 982, 1485, 1702, 1741
FauI CCCGC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 6 cut(s) 494, 1095, 1113, 1125, 1612, 1667
FokI GGATG 4 cut(s) 168, 203, 1973, 2009
Fsp4HI GCNGC 6 cut(s) 494, 1095, 1113, 1125, 1612, 1667
FspBI CTAG 5 cut(s) 144, 237, 488, 1001, 1335
GlaI GCGC 2 cut(s) 374, 1329
GluI GCNGC 6 cut(s) 494, 1095, 1113, 1125, 1612, 1667
HaeIII GGCC 4 cut(s) 205, 395, 809, 911
HapII CCGG 2 cut(s) 202, 473
HgaI GACGC 1 cut(s) 1990
HhaI GCGC 2 cut(s) 375, 1330
Hin1I GRCGYC 1 cut(s) 1982
Hin1II CATG 8 cut(s) 268, 470, 592, 730, 986, 1489, 1706, 1745
Hin6I GCGC 2 cut(s) 373, 1328
HinP1I GCGC 2 cut(s) 373, 1328
HpaII CCGG 2 cut(s) 202, 473
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 213, 483, 1143
Hpy8I GTNNAC 3 cut(s) 213, 483, 1143
HpyAV CCTTC 3 cut(s) 787, 952, 1942
HpyCH4III ACNGT 5 cut(s) 613, 749, 1349, 1888, 2012
HpyCH4IV ACGT 2 cut(s) 1261, 1498
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 270, 676, 1121
HpyF3I CTNAG 6 cut(s) 134, 639, 680, 891, 1080, 1116
HpySE526I ACGT 2 cut(s) 1261, 1498
Hsp92I GRCGYC 1 cut(s) 1982
Hsp92II CATG 8 cut(s) 268, 470, 592, 730, 986, 1489, 1706, 1745
HspAI GCGC 2 cut(s) 373, 1328
Kpn2I TCCGGA 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 952
LguI GCTCTTC 1 cut(s) 1557
LmnI GCTCC 4 cut(s) 463, 475, 865, 1908
Lsp1109I GCAGC 6 cut(s) 505, 1099, 1106, 1136, 1623, 1678
LweI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1580, 1889
MaeI CTAG 5 cut(s) 144, 237, 488, 1001, 1335
MaeII ACGT 2 cut(s) 1261, 1498
MaeIII GTNAC 1 cut(s) 996
MfeI CAATTG 2 cut(s) 948, 1398
MflI RGATCY 3 cut(s) 448, 895, 1193
MlsI TGGCCA 1 cut(s) 911
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 4 cut(s) 839, 933, 976, 1820
MmeI TCCRAC 1 cut(s) 1974
Mox20I TGGCCA 1 cut(s) 911
MroI TCCGGA 1 cut(s) 472
MscI TGGCCA 1 cut(s) 911
MslI CAYNNNNRTG 3 cut(s) 1335, 1551, 1746
Msp20I TGGCCA 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 2 cut(s) 202, 473
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 2 cut(s) 948, 1398
Mva1269I GAATGC 2 cut(s) 1377, 1546
MvnI CGCG 2 cut(s) 1104, 1328
MwoI GCNNNNNNNGC 4 cut(s) 30, 270, 676, 1121
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 1 cut(s) 982
NlaIII CATG 8 cut(s) 268, 470, 592, 730, 986, 1489, 1706, 1745
NlaIV GGNNCC 3 cut(s) 17, 200, 897
NmuCI GTSAC 1 cut(s) 996
NspI RCATGY 2 cut(s) 592, 1745
NspV TTCGAA 1 cut(s) 343
PaeI GCATGC 1 cut(s) 1745
PaeR7I CTCGAG 1 cut(s) 115
PagI TCATGA 1 cut(s) 1702
PciSI GCTCTTC 1 cut(s) 1557
PctI GAATGC 2 cut(s) 1377, 1546
PfeI GAWTC 6 cut(s) 340, 1361, 1505, 1688, 1853, 1871
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 6 cut(s) 495, 1096, 1114, 1126, 1613, 1668
PleI GAGTC 4 cut(s) 838, 932, 975, 1819
PmaCI CACGTG 1 cut(s) 1262
PmlI CACGTG 1 cut(s) 1262
PpsI GAGTC 4 cut(s) 838, 932, 975, 1819
Ppu21I YACGTR 1 cut(s) 1262
PspCI CACGTG 1 cut(s) 1262
PspN4I GGNNCC 3 cut(s) 17, 200, 897
PspPI GGNCC 3 cut(s) 101, 198, 393
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 3 cut(s) 448, 895, 1193
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 2 cut(s) 615, 1501
RsaNI GTAC 2 cut(s) 614, 1500
RseI CAYNNNNRTG 3 cut(s) 1335, 1551, 1746
SapI GCTCTTC 1 cut(s) 1557
SatI GCNGC 6 cut(s) 494, 1095, 1113, 1125, 1612, 1667
Sau96I GGNCC 3 cut(s) 101, 198, 393
SchI GAGTC 4 cut(s) 839, 933, 976, 1820
ScrFI CCNGG 1 cut(s) 202
SfaNI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1580, 1889
SfcI CTRYAG 1 cut(s) 419
Sfr274I CTCGAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 2 cut(s) 101, 198
SlaI CTCGAG 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 1335, 1551, 1746
SmlI CTYRAG 2 cut(s) 115, 827
SmoI CTYRAG 2 cut(s) 115, 827
SpeI ACTAGT 1 cut(s) 1334
SphI GCATGC 1 cut(s) 1745
SsiI CCGC 3 cut(s) 22, 286, 1972
SspI AATATT 2 cut(s) 1313, 1754
SspMI CTAG 5 cut(s) 144, 237, 488, 1001, 1335
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 186, 982
TaaI ACNGT 5 cut(s) 613, 749, 1349, 1888, 2012
TaiI ACGT 2 cut(s) 1264, 1501
TaqI TCGA 2 cut(s) 116, 343
TaqII GACCGA 1 cut(s) 89
TfiI GAWTC 6 cut(s) 340, 1361, 1505, 1688, 1853, 1871
TscAI CASTG 9 cut(s) 599, 1354, 1528, 1621, 1753, 1834, 1869, 1918, 2017
TseFI GTSAC 1 cut(s) 996
TseI GCWGC 6 cut(s) 493, 1094, 1112, 1124, 1611, 1666
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 6 cut(s) 156, 1063, 1308, 1509, 1710, 1851
TspRI CASTG 9 cut(s) 599, 1354, 1528, 1621, 1753, 1834, 1869, 1918, 2017
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 101, 198
XapI RAATTY 4 cut(s) 760, 1172, 1381, 1709
XbaI TCTAGA 1 cut(s) 236
XceI RCATGY 2 cut(s) 592, 1745
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 403
XhoI CTCGAG 1 cut(s) 115
XspI CTAG 5 cut(s) 144, 237, 488, 1001, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.