Rorug02G0627500

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
74268833 .. 74271328
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0627500.1

Sequence Viewer

Length: 1161 bp
ATGTCTGATGGGTATTACAGTTCCAAGAAGACAGATGATATATGCGACGACGTTTGTGGAGAGGGATCAGAAGCAGCATTGAGCATGTCCAGACTACGATGCGTTTTGCGGGGGTTTGATTTGAAGACCTATATTTTCGTTTTTGCAGTTCTTCCATTATGCATCTTCGGTGTGTATTTACATGGGCAGAAGGTTTCGTATTTTTTACGACCTCTTTGGGAATCTCCTCCGAAGTCTTTCATTGAACTTCCACACTATTATCATGAGAATGTGTCAATGGAGACTCTCTGCAGACTTCATGGGTGGAAGACTCGTGAGTCACCAAGACGAGTTTATGATGCAGTTCTCTTCAGTAATGAGGTAGACATCCTTACAATTCGGTGGAATGAATTATATCCGTATGTCACCCAGTTTGTGCTGCTGGAATCAAACTCAACATTTACTGGCCTGCCCAAACCATTGGTTTTTGCTAAGAACCGGGACAAGTTTAAGTTTGTTGAAGACCGGCTCACTTATGTGACAACTGGAGGAAGATTTAAGAAAGGCGAGAACCCATTTTATGAGGAGGCATTTCAAAGAGTAGCACTAGACCAGCTTCTGAGAGTAGCCGGTATAGAAGATGATGATCTGCTGATAATGTCTGATGTTGACGAGATTCCTAGTGCTCACACAATTAATCTCTTGAGGTGGTGCGATGACATCCCACCTGTTGTTCATCTCAGGCTGAGGAACTACTTGTACTCTTTTGAGTATTACGTTGATGAAAAGAGCTGGAGGGCATCAGTTCACAGGTATCAAACTGGTAATACTACATATGCGCACTTCAGACAGAGCGACTACCTTTTGTCAGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCCATATCAGTGAGTTCATATTCAAGATGAAAGCTTACAGCCACTATGATCGGGTGAGGTTCTCTCATTACTTGAACCCTAAAAGGATTCAGGATGTGATATGCAAAGGGGCCGACCTATTTGACATGATTCCTGAGGAGTACACGTTTAAGGAGATTATTGGAAAGATGGGACCTATTCCTAGATCTTATTCAGCAGTTCATCTTCCTGCATATTTGCTGAACAATGCTGAGAAGTACAAGTACCTGTTGCCTGGAAACTGCAAGAGGGAAAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

386

Amino Acids

45.3

Weight (kDa)

6.89

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 39 - 384 7.1e-187 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
Acc16I TGCGCA 1 cut(s) 819
AccI GTMKAC 1 cut(s) 363
AciI CCGC 2 cut(s) 109, 880
AclWI GGATC 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 334, 808
AfaI GTAC 4 cut(s) 740, 1022, 1118, 1124
AflIII ACRYGT 1 cut(s) 1023
AgsI TTSAA 6 cut(s) 124, 245, 500, 575, 904, 955
AjnI CCWGG 1 cut(s) 1132
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 4 cut(s) 595, 771, 870, 914
AluI AGCT 4 cut(s) 595, 771, 870, 914
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 2 cut(s) 445, 990
ApeKI GCWGC 2 cut(s) 74, 418
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 2 cut(s) 990, 1052
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 312, 397, 946
AvaII GGWCC 1 cut(s) 1052
AxyI CCTNAGG 1 cut(s) 1014
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 4 cut(s) 35, 131, 314, 507
Bbv12I GWGCWC 1 cut(s) 667
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 86, 405
BccI CCATC 2 cut(s) 2, 1042
BciT130I CCWGG 1 cut(s) 1134
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 3 cut(s) 587, 660, 1062
BfmI CTRYAG 1 cut(s) 289
BglII AGATCT 1 cut(s) 1064
BisI GCNGC 2 cut(s) 75, 419
BlsI GCNGC 2 cut(s) 76, 420
Bme1390I CCNGG 2 cut(s) 479, 1134
Bme18I GGWCC 1 cut(s) 1052
BmgT120I GGNCC 2 cut(s) 990, 1052
BmiI GGNNCC 2 cut(s) 991, 1053
BmrFI CCNGG 2 cut(s) 479, 1134
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 5 cut(s) 89, 171, 328, 788, 841
BmuI ACTGGG 1 cut(s) 403
BpiI GAAGAC 4 cut(s) 35, 131, 314, 507
BplI GAGNNNNNCTC 2 cut(s) 928, 960
BpmI CTGGAG 2 cut(s) 546, 793
Bpu10I CCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 703
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 624
BsaXI ACNNNNNCTCC 2 cut(s) 1010, 1040
Bse118I RCCGGY 2 cut(s) 504, 608
Bse1I ACTGG 4 cut(s) 409, 448, 529, 805
Bse21I CCTNAGG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 1134
BseGI GGATG 3 cut(s) 366, 699, 979
BseJI GATNNNNATC 1 cut(s) 624
BseMII CTCAG 5 cut(s) 590, 716, 733, 1005, 1101
BseNI ACTGG 4 cut(s) 409, 448, 529, 805
BseRI GAGGAG 3 cut(s) 216, 578, 1031
BseXI GCAGC 2 cut(s) 86, 405
BshFI GGCC 2 cut(s) 447, 992
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 3 cut(s) 478, 505, 609
BslFI GGGAC 2 cut(s) 494, 1065
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 494, 1065
BsnI GGCC 2 cut(s) 447, 992
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 4 cut(s) 65, 625, 928, 1064
BspACI CCGC 2 cut(s) 109, 880
BspANI GGCC 2 cut(s) 447, 992
BspCNI CTCAG 5 cut(s) 591, 717, 732, 1006, 1102
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 991, 1053
BspMAI CTGCAG 1 cut(s) 293
BspPI GGATC 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 504, 608
BsrI ACTGG 4 cut(s) 409, 448, 529, 805
BssAI RCCGGY 2 cut(s) 504, 608
BssMI GATC 4 cut(s) 65, 625, 928, 1064
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 1134
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 6 cut(s) 471, 599, 719, 725, 1014, 1110
BstF5I GGATG 3 cut(s) 366, 699, 979
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 4 cut(s) 68, 628, 931, 1067
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 4 cut(s) 65, 625, 928, 1064
BstNI CCWGG 1 cut(s) 1134
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 477, 1132
BstSFI CTRYAG 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 86, 405
BstV2I GAAGAC 4 cut(s) 35, 131, 314, 507
BstX2I RGATCY 1 cut(s) 1064
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 1064
Bsu36I CCTNAGG 1 cut(s) 1014
BsuRI GGCC 2 cut(s) 447, 992
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 3 cut(s) 366, 699, 979
BtsIMutI CAGTG 1 cut(s) 895
Cac8I GCNNGC 1 cut(s) 449
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 2 cut(s) 504, 608
Cfr13I GGNCC 2 cut(s) 990, 1052
Csp6I GTAC 4 cut(s) 739, 1021, 1117, 1123
CviAII CATG 5 cut(s) 85, 182, 263, 299, 1006
CviQI GTAC 4 cut(s) 739, 1021, 1117, 1123
DdeI CTNAG 6 cut(s) 471, 599, 719, 725, 1014, 1110
DpnI GATC 4 cut(s) 67, 627, 930, 1066
DpnII GATC 4 cut(s) 65, 625, 928, 1064
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 869
Eco47I GGWCC 1 cut(s) 1052
Eco57I CTGAAG 2 cut(s) 334, 808
Eco81I CCTNAGG 1 cut(s) 1014
EcoO109I RGGNCCY 1 cut(s) 1052
EcoRII CCWGG 1 cut(s) 1132
EcoT22I ATGCAT 1 cut(s) 164
FaeI CATG 5 cut(s) 88, 185, 266, 302, 1009
FaqI GGGAC 2 cut(s) 494, 1065
FatI CATG 5 cut(s) 84, 181, 262, 298, 1005
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 75, 419
FokI GGATG 3 cut(s) 353, 686, 986
Fsp4HI GCNGC 2 cut(s) 75, 419
FspAI RTGCGCAY 1 cut(s) 819
FspBI CTAG 3 cut(s) 587, 660, 1062
FspI TGCGCA 1 cut(s) 819
GlaI GCGC 1 cut(s) 819
GluI GCNGC 2 cut(s) 75, 419
GsuI CTGGAG 2 cut(s) 546, 793
HaeIII GGCC 2 cut(s) 447, 992
HapII CCGG 3 cut(s) 478, 505, 609
HhaI GCGC 1 cut(s) 820
Hin1II CATG 5 cut(s) 88, 185, 266, 302, 1009
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 8 cut(s) 221, 283, 310, 317, 425, 655, 967, 1009
HpaII CCGG 3 cut(s) 478, 505, 609
HphI GGTGA 3 cut(s) 312, 397, 946
Hpy166II GTNNAC 4 cut(s) 364, 649, 787, 1023
Hpy188I TCNGA 7 cut(s) 7, 70, 231, 600, 643, 827, 850
Hpy188III TCNNGA 7 cut(s) 90, 263, 314, 682, 904, 971, 1013
Hpy8I GTNNAC 4 cut(s) 364, 649, 787, 1023
Hpy99I CGWCG 2 cut(s) 50, 53
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 3 cut(s) 51, 756, 1025
HpyCH4V TGCA 8 cut(s) 146, 162, 291, 341, 854, 984, 1091, 1143
HpyF3I CTNAG 6 cut(s) 471, 599, 719, 725, 1014, 1110
HpySE526I ACGT 3 cut(s) 51, 756, 1025
Hsp92II CATG 5 cut(s) 88, 185, 266, 302, 1009
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 4 cut(s) 65, 625, 928, 1064
Lsp1109I GCAGC 2 cut(s) 86, 405
LweI GCATC 5 cut(s) 89, 171, 328, 788, 841
MaeI CTAG 3 cut(s) 587, 660, 1062
MaeII ACGT 3 cut(s) 51, 756, 1025
MaeIII GTNAC 3 cut(s) 318, 403, 517
MalI GATC 4 cut(s) 67, 627, 930, 1066
MboI GATC 4 cut(s) 65, 625, 928, 1064
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 3 cut(s) 375, 389, 672
MlyI GAGTC 3 cut(s) 277, 304, 326
Mph1103I ATGCAT 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 4 cut(s) 489, 537, 675, 1029
MslI CAYNNNNRTG 3 cut(s) 267, 515, 888
MspI CCGG 3 cut(s) 478, 505, 609
MspR9I CCNGG 2 cut(s) 479, 1134
MvaI CCWGG 1 cut(s) 1134
NciI CCSGG 1 cut(s) 479
NdeI CATATG 1 cut(s) 814
NdeII GATC 4 cut(s) 65, 625, 928, 1064
NlaIII CATG 5 cut(s) 88, 185, 266, 302, 1009
NlaIV GGNNCC 2 cut(s) 991, 1053
NmuCI GTSAC 3 cut(s) 318, 403, 517
NsbI TGCGCA 1 cut(s) 819
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 515
PagI TCATGA 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 5 cut(s) 221, 425, 655, 967, 1009
PkrI GCNGC 2 cut(s) 76, 420
PleI GAGTC 3 cut(s) 277, 304, 325
PpsI GAGTC 3 cut(s) 277, 304, 325
PpuMI RGGWCCY 1 cut(s) 1052
PshBI ATTAAT 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 1132
PspGI CCWGG 1 cut(s) 1132
PspN4I GGNNCC 2 cut(s) 991, 1053
PspPI GGNCC 2 cut(s) 990, 1052
PspPPI RGGWCCY 1 cut(s) 1052
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 1064
RsaI GTAC 4 cut(s) 740, 1022, 1118, 1124
RsaNI GTAC 4 cut(s) 739, 1021, 1117, 1123
RseI CAYNNNNRTG 3 cut(s) 267, 515, 888
SaqAI TTAA 4 cut(s) 489, 537, 675, 1029
SatI GCNGC 2 cut(s) 75, 419
Sau3AI GATC 4 cut(s) 65, 625, 928, 1064
Sau96I GGNCC 2 cut(s) 990, 1052
SchI GAGTC 3 cut(s) 277, 304, 326
ScrFI CCNGG 2 cut(s) 479, 1134
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 5 cut(s) 89, 171, 328, 788, 841
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 1052
SmiMI CAYNNNNRTG 3 cut(s) 267, 515, 888
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 3 cut(s) 375, 389, 672
SsiI CCGC 2 cut(s) 109, 880
SspMI CTAG 3 cut(s) 587, 660, 1062
StyD4I CCNGG 2 cut(s) 477, 1132
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 3 cut(s) 54, 759, 1028
TasI AATT 3 cut(s) 375, 389, 672
TatI WGTACW 3 cut(s) 738, 1020, 1116
TfiI GAWTC 5 cut(s) 221, 425, 655, 967, 1009
Tru1I TTAA 4 cut(s) 489, 537, 675, 1029
Tru9I TTAA 4 cut(s) 489, 537, 675, 1029
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 3 cut(s) 318, 403, 517
TseI GCWGC 2 cut(s) 74, 418
Tsp45I GTSAC 3 cut(s) 318, 403, 517
TspDTI ATGAA 8 cut(s) 229, 287, 402, 704, 777, 886, 923, 1070
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 1052
VspI ATTAAT 1 cut(s) 675
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 3 cut(s) 587, 660, 1062
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.