RchiOBHm_Chr6g0289171

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000251
Physical Location & Seq
Forward (+)
52334466 .. 52338051
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25942

Sequence Viewer

Length: 2295 bp
ATGGCAAATGATAATCTAATCATTGGGCAGAGTCGTGATTTTCCGTTGAGTCAGAATCCACAGCTGGGACTGGGGCATGATCACAGTATGATTATGGGCCAAAGTCATAATTTTGCACTGGGACAAACCCATGATCAGGATTTGGAAGTAGGGCATGGTACTAATGATGATAAGCAGGGTCTTAGAGATGCCCATGAGCATGGATTAGCTTATGACCAGACAAACGAACATGTGATAGCTCTACAAGATATACAGAATCTTGAAGAAGAAGAAGCTTTGGGGTTGGATCAGGATAATGATCTTGAACCCGATCAAGAGAATATTGATGTTAACAGCCATGATAGTGATCTTGGTCTTAGCGTGGTGAATCACGAGTTGGTTTTGATGGATAGTCATGAATTGGCTGTTGCGGAGAACCATGATCTTTCTGAAAATTTAGATTTAGAGATGGATCAAAATCAGCACATGAGTATTCTACCTGTCTCAGGCATGTCATTGGAGCAGTCTGAGAGTATGGATAGTCCTCCTGTTCTTCAGTGTCGAGCGCTAGCTAATTCAAATCACCAGCTGGCTGTTGGGCAAGAGTTTCCTGATGTCCAGAGCTGTCGAAGGGCACTTAGAGATGCAGCTATTGCGCTTCACTTTGAGATACAGACAGTCAAGTCTGATAAAACTCGTTTCACTGCCAAATGTGCAAGTGAAGGATGCTCTTGGCGAATTCATGCTGCAAAGCTTCCAGGTGTGCCTACCTTCTCAATAAGGACCATTCATGAAGAACACACTTGTCGTGGAATCACCCATCTTGGTCATCAGCAAGCCTCAGTCCAGTGGGTGGCAAATACTGTGGAACAACGCTTGAGGGAGAATCCTAATTGCAAGCCAAAAGAGATACTAGAAGAGATCCACCGTGTTCATGGGATTGCGTTAACATATAAGCAGGCATGGAGGGGGAAGGAACGGCTCATGGCTGCTGTTCGTGGATCTTTTGAAGAAGATTATCGCCTCCTTCCTCAATATTGTGAACAGATCAGAAGGACCAATCCAGGAAGTATTGCCCAGGTTTATGGGAATCCTGATGATAACTCCTTCCAACGTCTATTTGTATCATTACATGCATCAATATATGGATTTTTGAATGCATGTCGGCCTCTTCTTGGACTTGATAGAGTTCCTCTGAAAAGCAAGTATCTTGGGACTTTGCTTTTTGCCACTGGATTTGATGGAGAGGGAGCTTTATTTCCATTGGCATTTGGAGTGGTGGATGAAGAGAACGATGAGAATTGGATGTGGTTCCTCTCTGAGATTCGGGTCCTACTGGAAAATTATGCAGAGTACATGCCAAGGCTTACAATTTTGTCTGATAGGCGGCAGGGTATTGTTGATGGAGTGGAAGCAAACTTCCCAACTGCTTTTCATGGGTTTTGTTTGCAGCATTTAAGCGACAGTTTACGGAAGGAATTTAATAGTACTCCGCTTGTTAATCTTCTATGGGAGGCTGCTTATGCTCTTACTCACTTTGAATGTGAACAAAAAATTATGGAGATTGAAGAGATCTCTCCAGAAGCAGCCCAATGGATTAGACAAATTGCACCAACGTTGTGGGCAACAGCATATTTTGAGGGTACAAGGTTTGGACAGTTGACGGCTAATTGGGCCGAATCTTTAAATTCTTGGATAGCAGAGGCATCTGGGCTTCCAATAATTCAGTTGATGGAGTGTATCCGACGACATCTGATGACTTGGTTCAATGAGCGTCGTGAAATGAGCATGCAGTGGACAAACATACTTGTTCCTTCTGCTGAAAGCTCTGTGACAAAGGCAGTTGAGCTTTCTCACCCATTCAATGCTTTCCGTGGAAATGATGCTGATTTCGAAGTTAGGTTCCCTGAAGGATCACATATAGTGGATATTCGTAACCGTAGATGTACATGTAATGGATGGCAGTTCTGTGGGTTGCCATGTTCTCATGCCGTGGCAGCTCTCCGCTCTTGTGGGCAGAATGTGTTTCGGTTCACTGAAAGTTGTTTCACTGTGACAAATTATCGCAAAGCCTACTCGGAGACAATACATCCTATTCCAGACAGAACTCTTTGGAAGGAGATGGCTGGATTTGAAGATGAAGCCAATGGAAGTTTATGGGTCACGATTAACCCACCAAAGTCGCTTCGGCCACCTAGCCGACCAAGGAAAAGGCGAATTCGCGCAGAAGATGCTGGTCGTGCTAAACGAGTGGTGCATTGCAGCCGCTGCAATCAGACTGGACATTTTCGAACAACTTGTTCAGCTCCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

764

Amino Acids

86.59

Weight (kDa)

5.47

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 188 - 253 2.2e-26 MuDR family transposase
MULE PF10551 387 - 480 4.3e-15 MULE transposase domain
SWIM PF04434 635 - 665 1.6e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 661
AccB7I CCANNNNNTGG 1 cut(s) 832
AccBSI CCGCTC 1 cut(s) 1986
AccII CGCG 1 cut(s) 2202
AciI CCGC 5 cut(s) 410, 1366, 1472, 1984, 2245
AclI AACGTT 1 cut(s) 1595
AclWI GGATC 5 cut(s) 294, 459, 895, 988, 1900
AcoI YGGCCR 1 cut(s) 2168
AcsI RAATTY 5 cut(s) 433, 717, 1457, 1666, 2196
AcuI CTGAAG 2 cut(s) 518, 1908
AfaI GTAC 5 cut(s) 160, 1334, 1468, 1624, 1927
AfeI AGCGCT 1 cut(s) 546
AfiI CCNNNNNNNGG 5 cut(s) 65, 136, 485, 832, 1154
AflIII ACRYGT 2 cut(s) 229, 1928
AjnI CCWGG 3 cut(s) 736, 1042, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
Alw26I GTCTC 2 cut(s) 487, 2054
AlwI GGATC 5 cut(s) 294, 459, 895, 988, 1900
AlwNI CAGNNNCTG 1 cut(s) 2247
Aor51HI AGCGCT 1 cut(s) 546
AoxI GGCC 4 cut(s) 97, 1145, 1653, 2168
ApeKI GCWGC 9 cut(s) 626, 725, 968, 1429, 1496, 1565, 1976, 2241, 2247
ApoI RAATTY 5 cut(s) 433, 717, 1457, 1666, 2196
AspLEI GCGC 3 cut(s) 547, 637, 2204
AspS9I GGNCC 5 cut(s) 97, 762, 1035, 1309, 1653
AsuHPI GGTGA 4 cut(s) 376, 554, 787, 1826
AsuII TTCGAA 2 cut(s) 1872, 2269
AsuNHI GCTAGC 1 cut(s) 547
AvaII GGWCC 3 cut(s) 762, 1035, 1309
BaeGI GKGCMC 1 cut(s) 616
BauI CACGAG 1 cut(s) 371
BbvI GCAGC 9 cut(s) 638, 712, 955, 1441, 1483, 1577, 1988, 2234, 2253
BccI CCATC 8 cut(s) 379, 442, 807, 1214, 1376, 1705, 1932, 2095
BceAI ACGGC 3 cut(s) 974, 1659, 1955
BciT130I CCWGG 3 cut(s) 738, 1044, 1058
BciVI GTATCC 1 cut(s) 1730
BclI TGATCA 2 cut(s) 79, 133
BcoDI GTCTC 2 cut(s) 487, 2054
BfaI CTAG 3 cut(s) 548, 893, 2175
BfoI RGCGCY 1 cut(s) 548
BfuI GTATCC 1 cut(s) 1730
BglII AGATCT 1 cut(s) 1551
BmcAI AGTACT 1 cut(s) 1468
Bme1390I CCNGG 3 cut(s) 738, 1044, 1058
Bme18I GGWCC 3 cut(s) 762, 1035, 1309
BmgT120I GGNCC 5 cut(s) 97, 762, 1035, 1309, 1653
BmiI GGNNCC 3 cut(s) 1292, 1310, 1883
BmrFI CCNGG 3 cut(s) 738, 1044, 1058
BmrI ACTGGG 2 cut(s) 80, 128
BmsI GCATC 7 cut(s) 178, 613, 695, 1124, 1694, 1852, 2200
BmtI GCTAGC 1 cut(s) 551
BmuI ACTGGG 2 cut(s) 80, 128
BpmI CTGGAG 1 cut(s) 1542
Bpu14I TTCGAA 2 cut(s) 1872, 2269
BpuEI CTTGAG 1 cut(s) 877
BsaBI GATNNNNATC 3 cut(s) 297, 345, 456
BsaJI CCNNGG 5 cut(s) 1056, 1340, 1852, 1971, 2183
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 136, 485, 832, 1154
Bse1I ACTGG 6 cut(s) 75, 123, 826, 1216, 1320, 2263
Bse3DI GCAATG 1 cut(s) 2236
Bse8I GATNNNNATC 3 cut(s) 297, 345, 456
BseBI CCWGG 3 cut(s) 738, 1044, 1058
BseDI CCNNGG 5 cut(s) 1056, 1340, 1852, 1971, 2183
BseGI GGATG 5 cut(s) 710, 1267, 1290, 1943, 2068
BseJI GATNNNNATC 3 cut(s) 297, 345, 456
BseLI CCNNNNNNNGG 5 cut(s) 65, 136, 485, 832, 1154
BseMI GCAATG 1 cut(s) 2236
BseMII CTCAG 4 cut(s) 498, 498, 834, 1290
BseNI ACTGG 6 cut(s) 75, 123, 826, 1216, 1320, 2263
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 9 cut(s) 638, 712, 955, 1441, 1483, 1577, 1988, 2234, 2253
BseYI CCCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 2202
BshFI GGCC 4 cut(s) 99, 1147, 1655, 2170
BslFI GGGAC 3 cut(s) 81, 135, 1207
BslI CCNNNNNNNGG 5 cut(s) 65, 136, 485, 832, 1154
BsmAI GTCTC 2 cut(s) 487, 2054
BsmFI GGGAC 3 cut(s) 81, 135, 1207
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 4 cut(s) 99, 1147, 1655, 2170
Bsp119I TTCGAA 2 cut(s) 1872, 2269
Bsp1286I GDGCHC 1 cut(s) 616
Bsp1407I TGTACA 1 cut(s) 1925
BspACI CCGC 5 cut(s) 410, 1366, 1472, 1984, 2245
BspANI GGCC 4 cut(s) 99, 1147, 1655, 2170
BspCNI CTCAG 4 cut(s) 497, 499, 833, 1291
BspFNI CGCG 1 cut(s) 2202
BspHI TCATGA 2 cut(s) 394, 769
BspLI GGNNCC 3 cut(s) 1292, 1310, 1883
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 5 cut(s) 294, 459, 895, 988, 1900
BspT104I TTCGAA 2 cut(s) 1872, 2269
BsrBI CCGCTC 1 cut(s) 1986
BsrDI GCAATG 1 cut(s) 2236
BsrGI TGTACA 1 cut(s) 1925
BsrI ACTGG 6 cut(s) 75, 123, 826, 1216, 1320, 2263
BssECI CCNNGG 5 cut(s) 1056, 1340, 1852, 1971, 2183
BssSI CACGAG 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 1340, 2183
Bst2BI CACGAG 1 cut(s) 371
Bst2UI CCWGG 3 cut(s) 738, 1044, 1058
Bst4CI ACNGT 8 cut(s) 86, 658, 844, 908, 1445, 1638, 1919, 2032
Bst6I CTCTTC 4 cut(s) 891, 1155, 1260, 1542
BstAPI GCANNNNNTGC 3 cut(s) 632, 2210, 2247
BstAUI TGTACA 1 cut(s) 1925
BstBI TTCGAA 2 cut(s) 1872, 2269
BstC8I GCNNGC 6 cut(s) 549, 570, 816, 878, 939, 1769
BstDEI CTNAG 7 cut(s) 182, 356, 484, 507, 617, 820, 1299
BstDSI CCRYGG 2 cut(s) 1852, 1971
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 5 cut(s) 710, 1267, 1290, 1943, 2068
BstFNI CGCG 1 cut(s) 2202
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 3 cut(s) 547, 637, 2204
BstMAI GTCTC 2 cut(s) 487, 2054
BstMWI GCNNNNNNNGC 8 cut(s) 632, 692, 1502, 1652, 1976, 2210, 2219, 2247
BstNI CCWGG 3 cut(s) 738, 1044, 1058
BstNSI RCATGY 7 cut(s) 233, 493, 1115, 1143, 1339, 1771, 1932
BstSCI CCNGG 3 cut(s) 736, 1042, 1056
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 1 cut(s) 2202
BstV1I GCAGC 9 cut(s) 638, 712, 955, 1441, 1483, 1577, 1988, 2234, 2253
BstX2I RGATCY 3 cut(s) 900, 980, 1551
BstXI CCANNNNNNTGG 3 cut(s) 200, 1064, 1599
BstYI RGATCY 3 cut(s) 900, 980, 1551
BsuI GTATCC 1 cut(s) 1730
BsuRI GGCC 4 cut(s) 99, 1147, 1655, 2170
BtgI CCRYGG 2 cut(s) 1852, 1971
BtsCI GGATG 5 cut(s) 710, 1267, 1290, 1943, 2068
BtsI GCAGTG 2 cut(s) 681, 1778
BtsIMutI CAGTG 8 cut(s) 116, 542, 681, 833, 1209, 1778, 2013, 2028
Cac8I GCNNGC 6 cut(s) 549, 570, 816, 878, 939, 1769
CaiI CAGNNNCTG 1 cut(s) 2247
CciI TCATGA 2 cut(s) 394, 769
CfoI GCGC 3 cut(s) 547, 637, 2204
Cfr13I GGNCC 5 cut(s) 97, 762, 1035, 1309, 1653
CseI GACGC 1 cut(s) 1742
Csp6I GTAC 5 cut(s) 159, 1333, 1467, 1623, 1926
CspCI CAANNNNNGTGG 4 cut(s) 825, 860, 1198, 1233
CviQI GTAC 5 cut(s) 159, 1333, 1467, 1623, 1926
DdeI CTNAG 7 cut(s) 182, 356, 484, 507, 617, 820, 1299
DraI TTTAAA 1 cut(s) 1665
DrdI GACNNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 2168
Eam1104I CTCTTC 4 cut(s) 891, 1155, 1260, 1542
EarI CTCTTC 4 cut(s) 891, 1155, 1260, 1542
Eco130I CCWWGG 2 cut(s) 1340, 2183
Eco47I GGWCC 3 cut(s) 762, 1035, 1309
Eco47III AGCGCT 1 cut(s) 546
Eco57I CTGAAG 2 cut(s) 518, 1908
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 1309
EcoRI GAATTC 2 cut(s) 717, 2196
EcoRII CCWGG 3 cut(s) 736, 1042, 1056
EcoT14I CCWWGG 2 cut(s) 1340, 2183
EcoT22I ATGCAT 2 cut(s) 1117, 1141
ErhI CCWWGG 2 cut(s) 1340, 2183
FaqI GGGAC 3 cut(s) 81, 135, 1207
FbaI TGATCA 2 cut(s) 79, 133
FokI GGATG 5 cut(s) 717, 1274, 1297, 1950, 2055
FspBI CTAG 3 cut(s) 548, 893, 2175
GlaI GCGC 3 cut(s) 546, 636, 2203
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 1542
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 4 cut(s) 99, 1147, 1655, 2170
HgaI GACGC 1 cut(s) 1742
HhaI GCGC 3 cut(s) 547, 637, 2204
Hin6I GCGC 3 cut(s) 545, 635, 2202
HinP1I GCGC 3 cut(s) 545, 635, 2202
HincII GTYRAC 3 cut(s) 331, 927, 1641
HindII GTYRAC 3 cut(s) 331, 927, 1641
HindIII AAGCTT 2 cut(s) 273, 731
HpaI GTTAAC 2 cut(s) 331, 927
HphI GGTGA 4 cut(s) 376, 554, 787, 1826
Hpy166II GTNNAC 8 cut(s) 331, 927, 1022, 1448, 1526, 1641, 1776, 2013
Hpy8I GTNNAC 8 cut(s) 331, 927, 1022, 1448, 1526, 1641, 1776, 2013
Hpy99I CGWCG 2 cut(s) 1728, 1758
HpyCH4III ACNGT 8 cut(s) 86, 658, 844, 908, 1445, 1638, 1919, 2032
HpyCH4IV ACGT 2 cut(s) 1093, 1595
HpyF10VI GCNNNNNNNGC 8 cut(s) 632, 692, 1502, 1652, 1976, 2210, 2219, 2247
HpyF3I CTNAG 7 cut(s) 182, 356, 484, 507, 617, 820, 1299
HpySE526I ACGT 2 cut(s) 1093, 1595
HspAI GCGC 3 cut(s) 545, 635, 2202
Ksp22I TGATCA 2 cut(s) 79, 133
KspAI GTTAAC 2 cut(s) 331, 927
LmnI GCTCC 3 cut(s) 499, 1229, 2290
Lsp1109I GCAGC 9 cut(s) 638, 712, 955, 1441, 1483, 1577, 1988, 2234, 2253
LweI GCATC 7 cut(s) 178, 613, 695, 1124, 1694, 1852, 2200
MaeI CTAG 3 cut(s) 548, 893, 2175
MaeII ACGT 2 cut(s) 1093, 1595
MaeIII GTNAC 4 cut(s) 1810, 1913, 2032, 2140
MbiI CCGCTC 1 cut(s) 1986
MflI RGATCY 3 cut(s) 900, 980, 1551
MhlI GDGCHC 1 cut(s) 616
MlyI GAGTC 2 cut(s) 40, 58
MmeI TCCRAC 3 cut(s) 264, 1114, 1747
Mph1103I ATGCAT 2 cut(s) 1117, 1141
MseI TTAA 7 cut(s) 330, 926, 1436, 1461, 1479, 1664, 2148
MslI CAYNNNNRTG 2 cut(s) 198, 342
MspA1I CMGCKG 3 cut(s) 64, 568, 2247
MspR9I CCNGG 3 cut(s) 738, 1044, 1058
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 3 cut(s) 738, 1044, 1058
MvnI CGCG 1 cut(s) 2202
MwoI GCNNNNNNNGC 8 cut(s) 632, 692, 1502, 1652, 1976, 2210, 2219, 2247
NheI GCTAGC 1 cut(s) 547
NlaIV GGNNCC 3 cut(s) 1292, 1310, 1883
NmuCI GTSAC 3 cut(s) 1810, 2032, 2140
NsiI ATGCAT 2 cut(s) 1117, 1141
NspI RCATGY 7 cut(s) 233, 493, 1115, 1143, 1339, 1771, 1932
NspV TTCGAA 2 cut(s) 1872, 2269
PaeI GCATGC 1 cut(s) 1771
PagI TCATGA 2 cut(s) 394, 769
PciI ACATGT 2 cut(s) 229, 1928
PcsI WCGNNNNNNNCGW 1 cut(s) 2224
PctI GAATGC 1 cut(s) 1141
PfeI GAWTC 8 cut(s) 55, 256, 367, 792, 865, 1069, 1303, 1658
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 1042
PleI GAGTC 2 cut(s) 39, 57
PpsI GAGTC 2 cut(s) 39, 57
PpuMI RGGWCCY 1 cut(s) 1309
PscI ACATGT 2 cut(s) 229, 1928
Psp1406I AACGTT 1 cut(s) 1595
Psp5II RGGWCCY 1 cut(s) 1309
Psp6I CCWGG 3 cut(s) 736, 1042, 1056
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 3 cut(s) 736, 1042, 1056
PspN4I GGNNCC 3 cut(s) 1292, 1310, 1883
PspPI GGNCC 5 cut(s) 97, 762, 1035, 1309, 1653
PspPPI RGGWCCY 1 cut(s) 1309
PstNI CAGNNNCTG 1 cut(s) 2247
PsuI RGATCY 3 cut(s) 900, 980, 1551
PvuII CAGCTG 2 cut(s) 64, 568
RsaI GTAC 5 cut(s) 160, 1334, 1468, 1624, 1927
RsaNI GTAC 5 cut(s) 159, 1333, 1467, 1623, 1926
RseI CAYNNNNRTG 2 cut(s) 198, 342
SaqAI TTAA 7 cut(s) 330, 926, 1436, 1461, 1479, 1664, 2148
Sau96I GGNCC 5 cut(s) 97, 762, 1035, 1309, 1653
ScaI AGTACT 1 cut(s) 1468
SchI GAGTC 2 cut(s) 40, 58
ScrFI CCNGG 3 cut(s) 738, 1044, 1058
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 7 cut(s) 178, 613, 695, 1124, 1694, 1852, 2200
SfuI TTCGAA 2 cut(s) 1872, 2269
SinI GGWCC 3 cut(s) 762, 1035, 1309
SmiMI CAYNNNNRTG 2 cut(s) 198, 342
SmlI CTYRAG 1 cut(s) 856
SmoI CTYRAG 1 cut(s) 856
SphI GCATGC 1 cut(s) 1771
SsiI CCGC 5 cut(s) 410, 1366, 1472, 1984, 2245
SspI AATATT 2 cut(s) 322, 1016
SspMI CTAG 3 cut(s) 548, 893, 2175
StyD4I CCNGG 3 cut(s) 736, 1042, 1056
StyI CCWWGG 2 cut(s) 1340, 2183
TaaI ACNGT 8 cut(s) 86, 658, 844, 908, 1445, 1638, 1919, 2032
TaiI ACGT 2 cut(s) 1096, 1598
TaqI TCGA 4 cut(s) 541, 607, 1872, 2269
TatI WGTACW 3 cut(s) 1332, 1466, 1925
TauI GCSGC 2 cut(s) 1369, 2247
TfiI GAWTC 8 cut(s) 55, 256, 367, 792, 865, 1069, 1303, 1658
Tru1I TTAA 7 cut(s) 330, 926, 1436, 1461, 1479, 1664, 2148
Tru9I TTAA 7 cut(s) 330, 926, 1436, 1461, 1479, 1664, 2148
TscAI CASTG 8 cut(s) 123, 542, 688, 833, 1216, 1778, 2020, 2035
TseFI GTSAC 3 cut(s) 1810, 2032, 2140
TseI GCWGC 9 cut(s) 626, 725, 968, 1429, 1496, 1565, 1976, 2241, 2247
Tsp45I GTSAC 3 cut(s) 1810, 2032, 2140
TspDTI ATGAA 8 cut(s) 411, 710, 758, 786, 902, 1278, 1403, 2133
TspGWI ACGGA 3 cut(s) 33, 1465, 1841
TspRI CASTG 8 cut(s) 123, 542, 688, 833, 1216, 1778, 2020, 2035
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 3 cut(s) 762, 1035, 1309
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 5 cut(s) 433, 717, 1457, 1666, 2196
XceI RCATGY 7 cut(s) 233, 493, 1115, 1143, 1339, 1771, 1932
XcmI CCANNNNNNNNNTGG 2 cut(s) 572, 911
XspI CTAG 3 cut(s) 548, 893, 2175
ZrmI AGTACT 1 cut(s) 1468
Zsp2I ATGCAT 2 cut(s) 1117, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.