Prupe.6G346500_v2.0.a1

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000251
Physical Location & Seq
Reverse (-)
29679837 .. 29684011
4175 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G346500.1

Sequence Viewer

Length: 2286 bp
ATGGCTAACCACGAGTTGATACTTGGGCAAAGTCACAATTTAGCACTCGGACAAAATCAGCAGGTACTGGGCCACAATCATAACCTAGGCCTTGGGCAAAATCATGAGTTTGAGTTGGGACAAGCCGACAATCATCATTTAGGTTTGGGGCAGGCCAACGAGCATCATTTGGGTTTGGGGCAGGCTCATGACCATGACCTGGGATTAGGGCATGCTCATGACCATGAATTGGGTTTAGGACAGAGCCATGAGCAAGAAGGGGTTGATGGTCACAGCTATGGGCATGGGGATGAGTTAGGTATGGATCGTAAACCTAATCATGATGACCATGAGTTGGCTCTTCATCCTCAGAACCATGAGTTGGGTTTAGTAGAGAACAATGAGCTGGCTGTCTCAGAGGACCAAGAACTTGATGAAAATTTGGAACTATCTATGGATCATAATCATGAAATGGGGATAGAATCTGCCCATGATATGAGTGTCCAGGAATCCCAGCTTGTACTCAGCTCCAGTCCTGTAATTCAGGCCCGTATGGCGATTGTAAATCCCAACTATGAATTGGCAGTGGGGCAAGAGTTCCCTGATGTCAAGAGTTGCCGGAGGGCTCTAAGGGATACAGCCATTGCCTTGCACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCCAAATGTGCCAGTGAGGGATGCCCATGGCGTATTCATGCTGCAAAACTCCCAGGAGTTCCAACTTTCACAATCAGGACCATCCATGAGAATCATACATGTGGAGGAATTTCTCATCTTGGCCATCAGCAAGCCTCAGTTCAGTGGGTTGCAAATTCTGTGGAGCAACGGCTTAGAGAGAACCCTAATTATAAGCCAAAGGAGATACTGGAGGAGATTCATCGAGTTCATGGTATCACCTTATCATACAAGCAAGCTTGGCGAGGAAAGGAGCGTATCATGGCTGCAATGCGTGGATCGTTTGAAGAAGGATATCGCTTGCTTCCACAATATTGTGAACAGCTTAAACGGACAAACCCAGGGAGTATTGCGTCTGTTTATGGAAACCCGAATGATAACTGCTTCCAGCGTCTCTTCATATCATTTCAGGCATCAATTTATGGTTTCCTGAATGCTTGTCGGCCCCTCCTTGGGCTTGATAGGACATATTTGAAAAGTAAGTATCTGGGTACTTTGCTTCTTGCGACCGGTTTCGATGGTGACGGTGCTCTCTTTCCTCTGGCATTTGGGGTTGTGGACGAGGAGAATGATGATAATTGGATGTGGTTTCTTTCTGAACTTCATAATCTGCTTGAGATTAATACAGAAAACATGCCTAGGCTTACAATTTTGTCAGACAGGCAGAAGGGCATTGTAGATGGAGTTGAAGCAAATTTTCCTACTGCTTTTCATGGCTTTTGCATGCGTCATTTGAGTGATAGCTTCCGCAAGGAGTTTAATAATACAATGCTTGTTAATCTTTTATGGGAAGCTGCTCATGTTCTCACTGTAATCGAATTCGAAGCAAAAATATTAGAGATTGAAGAAATATCACAAGATGCTGCATATTGGATTAGACGGATTCCAGCTCGCTTGTGGGCTACTGCTTACTTTGAGGGAACACGGTTTGGGCATTTGACAGCTAACATAGTTGAATCGCTAAATACTTGGATATTGGAGGCGTCGGGGCTTCCAATAATTCAGATGATGGAATTCATTAGAAGGCAGCTAATGACTTGGTTCAATGAGCGTCGAGAGACCAGTATGCAGTGGACATCGATTCTTGTGCCTAGTGCAGAGAGGCGGGTTGCGGAGGCTGAAGAGCGTGCACGCACTTTTCAGGTCCTTCGTGCTAATGAAGCTGAATTTGAAGTTATATCTCATGAAGGGACGAATGTTGTGGACATTCGGAACCGTTGCTGCCTTTGTCGGGGCTGGCAGCTTTATGGTTTGCCATGCGCACATGCTGTTGCAGCACTTAAATCATGCAGGCAGCAAGTCAATCGATTTACTGAGAGTTGTTTCACAGTTACCACCTATCGAAAGACATACTCACAAACAATACATCCTATTCCAGACAAATCCCTATGGATGGAGTTATCTGATGGAGATCCAAATGCAAGCAACGCTGCTGAGGTTCTCATCAACCCACCTAAGTCACTCCGCCCAGCAGGAAGACCAAGGAAGAAGCGTGTTCGAGCTGAAGACCGTGGCCGTGTGAAGCGAGTTGTGCATTGTAGTCGGTGCAATCAAACAGGCCACTTTAGAACGACGTGTGCAGCCCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

762

Amino Acids

86.23

Weight (kDa)

6.05

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
Acc16I TGCGCA 1 cut(s) 1954
Acc36I ACCTGC 1 cut(s) 52
AccB7I CCANNNNNTGG 4 cut(s) 199, 229, 334, 361
AciI CCGC 4 cut(s) 1441, 1798, 1805, 2158
AclWI GGATC 4 cut(s) 312, 444, 979, 2099
AcoI YGGCCR 2 cut(s) 796, 2206
AcsI RAATTY 7 cut(s) 418, 783, 829, 1387, 1511, 1706, 1859
AcuI CTGAAG 2 cut(s) 1833, 2217
AcyI GRCGYC 1 cut(s) 1676
AfaI GTAC 3 cut(s) 66, 501, 1186
AfiI CCNNNNNNNGG 8 cut(s) 199, 229, 334, 361, 1145, 1146, 1924, 2086
AflIII ACRYGT 2 cut(s) 773, 2267
AgeI ACCGGT 1 cut(s) 1202
AgsI TTSAA 8 cut(s) 638, 980, 1168, 1382, 1538, 1649, 1738, 1865
AjiI CACGTC 1 cut(s) 2268
AjnI CCWGG 4 cut(s) 198, 483, 727, 1033
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
Alw21I GWGCWC 2 cut(s) 1225, 1825
Alw26I GTCTC 3 cut(s) 397, 1091, 1745
Alw44I GTGCAC 1 cut(s) 1821
AlwI GGATC 4 cut(s) 312, 444, 979, 2099
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 8 cut(s) 70, 88, 153, 525, 796, 1136, 2206, 2251
ApaLI GTGCAC 1 cut(s) 1821
ApoI RAATTY 7 cut(s) 418, 783, 829, 1387, 1511, 1706, 1859
AseI ATTAAT 1 cut(s) 1314
AsiGI ACCGGT 1 cut(s) 1202
AspA2I CCTAGG 2 cut(s) 85, 1331
AspLEI GCGC 1 cut(s) 1955
AspS9I GGNCC 6 cut(s) 70, 400, 526, 753, 1137, 1837
AsuHPI GGTGA 2 cut(s) 904, 1226
AsuII TTCGAA 1 cut(s) 1515
AvaII GGWCC 3 cut(s) 400, 753, 1837
AvrII CCTAGG 2 cut(s) 85, 1331
BaeGI GKGCMC 1 cut(s) 1825
BalI TGGCCA 1 cut(s) 798
BanII GRGCYC 1 cut(s) 607
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 2176, 2205
Bbv12I GWGCWC 2 cut(s) 1225, 1825
BbvCI CCTCAGC 1 cut(s) 2127
BccI CCATC 8 cut(s) 260, 764, 807, 1205, 1367, 1696, 2080, 2093
BceAI ACGGC 2 cut(s) 860, 2193
BcgI CGANNNNNNTGC 6 cut(s) 1762, 1796, 1979, 2013, 2216, 2250
BciT130I CCWGG 4 cut(s) 200, 485, 729, 1035
BciVI GTATCC 1 cut(s) 607
BcoDI GTCTC 3 cut(s) 397, 1091, 1745
BfaI CTAG 3 cut(s) 86, 1332, 1785
BfuAI ACCTGC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 607
BglI GCCNNNNNGGC 1 cut(s) 533
BlnI CCTAGG 2 cut(s) 85, 1331
Bme1390I CCNGG 4 cut(s) 200, 485, 729, 1035
Bme18I GGWCC 3 cut(s) 400, 753, 1837
BmgBI CACGTC 1 cut(s) 2268
BmgT120I GGNCC 6 cut(s) 70, 400, 526, 753, 1137, 1837
BmiI GGNNCC 2 cut(s) 1139, 1907
BmrFI CCNGG 4 cut(s) 200, 485, 729, 1035
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 4 cut(s) 172, 686, 1115, 1543
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 2 cut(s) 2176, 2205
BpmI CTGGAG 2 cut(s) 493, 905
Bpu10I CCTNAGC 1 cut(s) 2127
Bpu14I TTCGAA 1 cut(s) 1515
BpuEI CTTGAG 1 cut(s) 1328
Bsa29I ATCGAT 2 cut(s) 1772, 1999
BsaBI GATNNNNATC 2 cut(s) 441, 2103
BsaHI GRCGYC 1 cut(s) 1676
BsaI GGTCTC 1 cut(s) 1745
BsaWI WCCGGW 1 cut(s) 1202
Bsc4I CCNNNNNNNGG 8 cut(s) 199, 229, 334, 361, 1145, 1146, 1924, 2086
Bse118I RCCGGY 1 cut(s) 1202
Bse1I ACTGG 5 cut(s) 72, 510, 687, 888, 1755
Bse3DI GCAATG 2 cut(s) 621, 969
Bse8I GATNNNNATC 2 cut(s) 441, 2103
BseBI CCWGG 4 cut(s) 200, 485, 729, 1035
BseCI ATCGAT 2 cut(s) 1772, 1999
BseGI GGATG 7 cut(s) 295, 343, 701, 756, 1281, 2059, 2091
BseJI GATNNNNATC 2 cut(s) 441, 2103
BseLI CCNNNNNNNGG 8 cut(s) 199, 229, 334, 361, 1145, 1146, 1924, 2086
BseMI GCAATG 2 cut(s) 621, 969
BseMII CTCAG 6 cut(s) 362, 408, 517, 825, 1998, 2118
BseNI ACTGG 5 cut(s) 72, 510, 687, 888, 1755
BseRI GAGGAG 2 cut(s) 902, 1271
BseSI GKGCMC 1 cut(s) 1825
BseYI CCCAGC 2 cut(s) 492, 2161
BsgI GTGCAG 1 cut(s) 1809
Bsh1285I CGRYCG 1 cut(s) 1203
BshFI GGCC 8 cut(s) 72, 90, 155, 527, 798, 1138, 2208, 2253
BshTI ACCGGT 1 cut(s) 1202
BshVI ATCGAT 2 cut(s) 1772, 1999
BsiEI CGRYCG 1 cut(s) 1203
BsiHKAI GWGCWC 2 cut(s) 1225, 1825
BsiSI CCGG 2 cut(s) 598, 1203
BslFI GGGAC 2 cut(s) 132, 1897
BslI CCNNNNNNNGG 8 cut(s) 199, 229, 334, 361, 1145, 1146, 1924, 2086
BsmAI GTCTC 3 cut(s) 397, 1091, 1745
BsmBI CGTCTC 1 cut(s) 1091
BsmFI GGGAC 2 cut(s) 132, 1897
BsmI GAATGC 1 cut(s) 1132
BsnI GGCC 8 cut(s) 72, 90, 155, 527, 798, 1138, 2208, 2253
Bso31I GGTCTC 1 cut(s) 1745
Bsp119I TTCGAA 1 cut(s) 1515
Bsp1286I GDGCHC 3 cut(s) 607, 1225, 1825
Bsp143I GATC 4 cut(s) 304, 436, 971, 2104
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 4 cut(s) 1441, 1798, 1805, 2158
BspANI GGCC 8 cut(s) 72, 90, 155, 527, 798, 1138, 2208, 2253
BspCNI CTCAG 6 cut(s) 361, 407, 516, 824, 1999, 2119
BspDI ATCGAT 2 cut(s) 1772, 1999
BspHI TCATGA 6 cut(s) 103, 187, 217, 319, 445, 1876
BspLI GGNNCC 2 cut(s) 1139, 1907
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 4 cut(s) 312, 444, 979, 2099
BspQI GCTCTTC 2 cut(s) 345, 1809
BspT104I TTCGAA 1 cut(s) 1515
BspTNI GGTCTC 1 cut(s) 1745
BsrDI GCAATG 2 cut(s) 621, 969
BsrFI RCCGGY 1 cut(s) 1202
BsrI ACTGG 5 cut(s) 72, 510, 687, 888, 1755
BssAI RCCGGY 1 cut(s) 1202
BssMI GATC 4 cut(s) 304, 436, 971, 2104
BssNI GRCGYC 1 cut(s) 1676
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 6 cut(s) 85, 91, 701, 1144, 1331, 2174
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 4 cut(s) 200, 485, 729, 1035
Bst4CI ACNGT 6 cut(s) 1220, 1504, 1620, 1910, 2023, 2204
Bst6I CTCTTC 3 cut(s) 345, 1094, 1809
BstACI GRCGYC 1 cut(s) 1676
BstBI TTCGAA 1 cut(s) 1515
BstDEI CTNAG 9 cut(s) 348, 394, 503, 608, 811, 848, 2007, 2127, 2148
BstDSI CCRYGG 2 cut(s) 701, 2203
BstF5I GGATG 7 cut(s) 295, 343, 701, 756, 1281, 2059, 2091
BstHHI GCGC 1 cut(s) 1955
BstKTI GATC 4 cut(s) 307, 439, 974, 2107
BstMAI GTCTC 3 cut(s) 397, 1091, 1745
BstMBI GATC 4 cut(s) 304, 436, 971, 2104
BstMCI CGRYCG 1 cut(s) 1203
BstMWI GCNNNNNNNGC 7 cut(s) 533, 683, 934, 1853, 1967, 2120, 2224
BstNI CCWGG 4 cut(s) 200, 485, 729, 1035
BstNSI RCATGY 5 cut(s) 215, 777, 1330, 1420, 1961
BstSCI CCNGG 4 cut(s) 198, 483, 727, 1033
BstSLI GKGCMC 1 cut(s) 1825
BstV2I GAAGAC 2 cut(s) 2176, 2205
BstX2I RGATCY 1 cut(s) 2104
BstYI RGATCY 1 cut(s) 2104
Bsu15I ATCGAT 2 cut(s) 1772, 1999
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 8 cut(s) 72, 90, 155, 527, 798, 1138, 2208, 2253
BsuTUI ATCGAT 2 cut(s) 1772, 1999
BtgI CCRYGG 2 cut(s) 701, 2203
BtrI CACGTC 1 cut(s) 2268
BtsCI GGATG 7 cut(s) 295, 343, 701, 756, 1281, 2059, 2091
BtsI GCAGTG 3 cut(s) 570, 672, 1769
BtsIMutI CAGTG 6 cut(s) 570, 672, 694, 824, 1500, 1769
BveI ACCTGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 6 cut(s) 103, 187, 217, 319, 445, 1876
CfoI GCGC 1 cut(s) 1955
Cfr10I RCCGGY 1 cut(s) 1202
Cfr13I GGNCC 6 cut(s) 70, 400, 526, 753, 1137, 1837
ClaI ATCGAT 2 cut(s) 1772, 1999
CseI GACGC 5 cut(s) 1035, 1073, 1409, 1665, 1733
Csp6I GTAC 3 cut(s) 65, 500, 1185
CspAI ACCGGT 1 cut(s) 1202
CspCI CAANNNNNGTGG 2 cut(s) 816, 851
CviQI GTAC 3 cut(s) 65, 500, 1185
DdeI CTNAG 9 cut(s) 348, 394, 503, 608, 811, 848, 2007, 2127, 2148
DpnI GATC 4 cut(s) 306, 438, 973, 2106
DpnII GATC 4 cut(s) 304, 436, 971, 2104
EaeI YGGCCR 2 cut(s) 796, 2206
Eam1104I CTCTTC 3 cut(s) 345, 1094, 1809
EarI CTCTTC 3 cut(s) 345, 1094, 1809
EciI GGCGGA 1 cut(s) 2147
Eco130I CCWWGG 6 cut(s) 85, 91, 701, 1144, 1331, 2174
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 607
Eco31I GGTCTC 1 cut(s) 1745
Eco32I GATATC 1 cut(s) 989
Eco47I GGWCC 3 cut(s) 400, 753, 1837
Eco57I CTGAAG 2 cut(s) 1833, 2217
EcoO109I RGGNCCY 1 cut(s) 1837
EcoRI GAATTC 2 cut(s) 1511, 1706
EcoRII CCWGG 4 cut(s) 198, 483, 727, 1033
EcoRV GATATC 1 cut(s) 989
EcoT14I CCWWGG 6 cut(s) 85, 91, 701, 1144, 1331, 2174
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 6 cut(s) 85, 91, 701, 1144, 1331, 2174
Esp3I CGTCTC 1 cut(s) 1091
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 132, 1897
FauI CCCGC 1 cut(s) 1791
FokI GGATG 7 cut(s) 302, 330, 708, 743, 1288, 2046, 2098
FriOI GRGCYC 1 cut(s) 607
FspAI RTGCGCAY 1 cut(s) 1954
FspBI CTAG 3 cut(s) 86, 1332, 1785
FspI TGCGCA 1 cut(s) 1954
GlaI GCGC 1 cut(s) 1954
GsaI CCCAGC 2 cut(s) 496, 2165
GsuI CTGGAG 2 cut(s) 493, 905
HaeIII GGCC 8 cut(s) 72, 90, 155, 527, 798, 1138, 2208, 2253
HapII CCGG 2 cut(s) 598, 1203
HgaI GACGC 5 cut(s) 1035, 1073, 1409, 1665, 1733
HhaI GCGC 1 cut(s) 1955
Hin1I GRCGYC 1 cut(s) 1676
Hin6I GCGC 1 cut(s) 1953
HinP1I GCGC 1 cut(s) 1953
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 8 cut(s) 461, 488, 664, 766, 892, 1576, 1649, 1774
HpaII CCGG 2 cut(s) 598, 1203
HphI GGTGA 2 cut(s) 904, 1226
Hpy166II GTNNAC 6 cut(s) 311, 1013, 1252, 1767, 1823, 1897
Hpy188I TCNGA 9 cut(s) 50, 351, 397, 658, 1291, 1351, 1698, 1905, 2098
Hpy8I GTNNAC 6 cut(s) 311, 1013, 1252, 1767, 1823, 1897
Hpy99I CGWCG 3 cut(s) 1681, 1749, 2269
HpyAV CCTTC 6 cut(s) 251, 977, 1354, 1710, 1850, 1874
HpyCH4III ACNGT 6 cut(s) 1220, 1504, 1620, 1910, 2023, 2204
HpyCH4IV ACGT 1 cut(s) 2267
HpyF10VI GCNNNNNNNGC 7 cut(s) 533, 683, 934, 1853, 1967, 2120, 2224
HpyF3I CTNAG 9 cut(s) 348, 394, 503, 608, 811, 848, 2007, 2127, 2148
HpySE526I ACGT 1 cut(s) 2267
Hsp92I GRCGYC 1 cut(s) 1676
HspAI GCGC 1 cut(s) 1953
Kzo9I GATC 4 cut(s) 304, 436, 971, 2104
LguI GCTCTTC 2 cut(s) 345, 1809
LmnI GCTCC 3 cut(s) 512, 838, 946
LweI GCATC 4 cut(s) 172, 686, 1115, 1543
MaeI CTAG 3 cut(s) 86, 1332, 1785
MaeII ACGT 1 cut(s) 2267
MaeIII GTNAC 5 cut(s) 32, 269, 1214, 2023, 2151
MalI GATC 4 cut(s) 306, 438, 973, 2106
MboI GATC 4 cut(s) 304, 436, 971, 2104
MboII GAAGA 8 cut(s) 332, 992, 1081, 1550, 1826, 2181, 2191, 2210
MflI RGATCY 1 cut(s) 2104
MhlI GDGCHC 3 cut(s) 607, 1225, 1825
MlsI TGGCCA 1 cut(s) 798
MluNI TGGCCA 1 cut(s) 798
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 761
Mox20I TGGCCA 1 cut(s) 798
MscI TGGCCA 1 cut(s) 798
MseI TTAA 6 cut(s) 651, 1020, 1314, 1452, 1470, 1974
MslI CAYNNNNRTG 8 cut(s) 192, 216, 222, 276, 288, 444, 774, 1428
Msp20I TGGCCA 1 cut(s) 798
MspI CCGG 2 cut(s) 598, 1203
MspR9I CCNGG 4 cut(s) 200, 485, 729, 1035
Mva1269I GAATGC 1 cut(s) 1132
MvaI CCWGG 4 cut(s) 200, 485, 729, 1035
MwoI GCNNNNNNNGC 7 cut(s) 533, 683, 934, 1853, 1967, 2120, 2224
NcoI CCATGG 1 cut(s) 701
NdeII GATC 4 cut(s) 304, 436, 971, 2104
NlaIV GGNNCC 2 cut(s) 1139, 1907
NmuCI GTSAC 4 cut(s) 32, 269, 1214, 2151
NsbI TGCGCA 1 cut(s) 1954
NspI RCATGY 5 cut(s) 215, 777, 1330, 1420, 1961
NspV TTCGAA 1 cut(s) 1515
PaeI GCATGC 2 cut(s) 215, 1420
PagI TCATGA 6 cut(s) 103, 187, 217, 319, 445, 1876
PasI CCCWGGG 1 cut(s) 1034
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 773
PciSI GCTCTTC 2 cut(s) 345, 1809
PctI GAATGC 1 cut(s) 1132
PfeI GAWTC 7 cut(s) 461, 488, 766, 892, 1576, 1649, 1774
PflMI CCANNNNNTGG 4 cut(s) 199, 229, 334, 361
PfoI TCCNGGA 1 cut(s) 483
PinAI ACCGGT 1 cut(s) 1202
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PpuMI RGGWCCY 1 cut(s) 1837
PscI ACATGT 1 cut(s) 773
PshBI ATTAAT 1 cut(s) 1314
PsiI TTATAA 1 cut(s) 867
Psp5II RGGWCCY 1 cut(s) 1837
Psp6I CCWGG 4 cut(s) 198, 483, 727, 1033
PspFI CCCAGC 2 cut(s) 492, 2161
PspGI CCWGG 4 cut(s) 198, 483, 727, 1033
PspN4I GGNNCC 2 cut(s) 1139, 1907
PspPI GGNCC 6 cut(s) 70, 400, 526, 753, 1137, 1837
PspPPI RGGWCCY 1 cut(s) 1837
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 2104
RsaI GTAC 3 cut(s) 66, 501, 1186
RsaNI GTAC 3 cut(s) 65, 500, 1185
RseI CAYNNNNRTG 8 cut(s) 192, 216, 222, 276, 288, 444, 774, 1428
SapI GCTCTTC 2 cut(s) 345, 1809
SaqAI TTAA 6 cut(s) 651, 1020, 1314, 1452, 1470, 1974
Sau3AI GATC 4 cut(s) 304, 436, 971, 2104
Sau96I GGNCC 6 cut(s) 70, 400, 526, 753, 1137, 1837
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 4 cut(s) 200, 485, 729, 1035
SduI GDGCHC 3 cut(s) 607, 1225, 1825
SfaNI GCATC 4 cut(s) 172, 686, 1115, 1543
SfuI TTCGAA 1 cut(s) 1515
SinI GGWCC 3 cut(s) 400, 753, 1837
SmiMI CAYNNNNRTG 8 cut(s) 192, 216, 222, 276, 288, 444, 774, 1428
SmlI CTYRAG 1 cut(s) 1307
SmoI CTYRAG 1 cut(s) 1307
SphI GCATGC 2 cut(s) 215, 1420
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 4 cut(s) 1441, 1798, 1805, 2158
SspI AATATT 2 cut(s) 1007, 1527
SspMI CTAG 3 cut(s) 86, 1332, 1785
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 4 cut(s) 198, 483, 727, 1033
StyI CCWWGG 6 cut(s) 85, 91, 701, 1144, 1331, 2174
TaaI ACNGT 6 cut(s) 1220, 1504, 1620, 1910, 2023, 2204
TaiI ACGT 1 cut(s) 2270
TaqI TCGA 9 cut(s) 898, 1209, 1509, 1515, 1747, 1772, 1999, 2035, 2191
TatI WGTACW 1 cut(s) 499
TfiI GAWTC 7 cut(s) 461, 488, 766, 892, 1576, 1649, 1774
Tru1I TTAA 6 cut(s) 651, 1020, 1314, 1452, 1470, 1974
Tru9I TTAA 6 cut(s) 651, 1020, 1314, 1452, 1470, 1974
TscAI CASTG 6 cut(s) 570, 679, 694, 824, 1507, 1769
TseFI GTSAC 4 cut(s) 32, 269, 1214, 2151
Tsp45I GTSAC 4 cut(s) 32, 269, 1214, 2151
TspGWI ACGGA 2 cut(s) 1039, 1588
TspRI CASTG 6 cut(s) 570, 679, 694, 824, 1507, 1769
Van91I CCANNNNNTGG 4 cut(s) 199, 229, 334, 361
VneI GTGCAC 1 cut(s) 1821
VpaK11BI GGWCC 3 cut(s) 400, 753, 1837
VspI ATTAAT 1 cut(s) 1314
XapI RAATTY 7 cut(s) 418, 783, 829, 1387, 1511, 1706, 1859
XceI RCATGY 5 cut(s) 215, 777, 1330, 1420, 1961
XcmI CCANNNNNNNNNTGG 2 cut(s) 556, 1587
XmaJI CCTAGG 2 cut(s) 85, 1331
XspI CTAG 3 cut(s) 86, 1332, 1785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.