RLG00000015852

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000251
Physical Location & Seq
Reverse (-)
1878989 .. 1882031
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015852

Sequence Viewer

Length: 2580 bp
ATGGCGAGGGCAAAACTTATCTTAATCTGCCAGTGTGGTGGCGAATTCGTCAGGAAGGATGATGGAACCTTGTCATATATGGGAGGAGATGCACATGCAGTAGATATCAATCATGAAAGCCTAATTGATGATCTCAAGTTGAAGTTAGCTGAAATGTGTAATTTAGAGTATAAATCTTTGTGCATCAAGTATTTTCTCCCGGGAAATAGGCGAACTCTCATCACTTTATCCAGTGATAAGGACTTGAAAAGGATGTATGAGTTCCATGGGAATGTGGTAACCGCTGATGTTTTTGTCATGGGAAAAGCAGGTTTTGATGCCGAAGAAGCCTTGAACACACTTCAAAGGGCATGTGGGATAAAACTGGCTGACTCTGTGACTCCCATTGCTGCCTCCAGTACTTCAGCTGTTGTTTTTCATGCTGATGCCAATCATTCTGTTGCAGTTAATTCACCAATTGCACCAAGTGATGTTAATACCGCAGTTGTTCCTGCTGCTTCAAATAATACTCCAGATGTCCCTTCCCCTGTTCTTGCTCCACAACAAGCAGGCCCTATTATATCTGCCAAAGAAGGGACTCAAAGCACAAGTGGAGTGGCTCACACCTCAAACACTTTTCCTGCCTTTACTGATCATGCAGATGCTATGACTTCAAAGCCGACCGGTTCCATTTCTCTTGCTGCTGATGCAAGTGTCCACAGCTTGGACATAAATGATATGGACTCTACCCCTGCTGGTGTTATTAGTTCCAGTCCACGCGGTTCCATTTCTGTTGCTGCTGATGCAAGTGTCCACAGCTTGGACATAGTTGATATGGACTGCACCCCTGCCGATACCGTTAAGAAACGAAGGCGCACTGCTGCATGGAAAATTGGTCCAGATGGCCCTACCATTGTTTCTGTCAAAGATGATATTGGGGATAAAGGAAAACCTACGTCTCGGAAGAAGAATACTGTTGACTATAAAGCTGCTCCAGAAACTGATAACGAGGATCAGCAAGAGGAGATTGTGCGGTGTAAAGATCGTAATAGCATTGACCCTATTCAGGCTATTCTAGGCCCGTCAAATGATGTTCCATCTGAAGAGTTGGTCACATTGTGGAAAGATGGTATCACTGGGGTTGGACAGGAGTTCACAAGTGTTCATGAATTTCGCGATGTACTGCAAAAATATGCCATTGCTCATCGTTTTATGTATAGGTTAAAAAAGAATGATACTAACCGTGCAAGTTGCATATGTATTGCTGAAGCCTGTTCTTGGAGAATTCAAGCATCCTGGGACTCATCTATGGAAAAGTTTGTGATAAAGAAGATGGAGAAAAGGCATACATGTGAAGGGGAGTCCTGGAAATTTTATCATCCAAAAAAGAATTGGTTGGTTAGTATCATTAAAGACAGATTAACAGACAACCCACATCTGAAGCCGAAAGAAATTGTCAACAGCATTCTTCAGGATTTTGGAATTACGGTGAACTATACTCAAGTACGGCGTGGAATTGAAGATGCAAAGGAACAACTTATGGGTTCTTATAAAGAAGCTTATAACCAGTTACCTTGGTTTTGTGAGAAAATGGCAGAGGCAAATCCTGGTAGTAATATTAGGCTTTTCACTGCTGTTTCAACCACACAGTCCTTAACTATTGTCTTTGATAGAGAGAAAGGACTGGAGAAATTAGTGACTGAGGTATTTGAGAATTCCCACCATGGCTACGCTATGCACCACCTTCTGAGAAGCTTCAAGAAAAACTTGAGGCCCCCATTTCATGGAGATGGAAAGGGTTCTTTGCTAAGTTGTTTTGTGGCTGCCGCCCAGTCACTCCGACTTGATGGTTTTAAGTATTTTACAGATCAAATTAAACAGGTTTCATCACATGCTTATGACTGGGTCCTCCAAATTGAACAAGGATGTTGGACAAATGTATTTTTCAAAGGTGAGCACTACAACCATATCACTGTTGATGTTGCAGAGACATACGCCAACTGGATAGAGGAAATGCGAGCATTGCCCATAATACGGAAGATAGAAGTGTTAAGCTCTAAGCTGATGGAATTGATAAATACTCGTCGAACTGATTCATGCACTTGGTCTACAGAACTTACTCCATCTAAGGAAGAAAAGCTGCAAGAAAAAATGTTACAAGCAGATCGCCTTAAAGTATTATTTTCAACTGATACTCTTTTTGAGGTTCATAATGATTCCATTAATGTAGTGGATCTCAACAAAGGGGAGTGTAGTTGTCTGGATTGGAAATCAACTGGGCTACCTTGCTGCCATGTTATTGCTGTCTTCAACTGCACAGGTAGGAATGTGTATGATTTTTGTTCAAGGTATTATAAAGTTGACAACTTTCGTTCAACTTATTCGGAATCCATAACCACTGTGGCGGTGCCTTTCAAGCCTTTGGATAGTGATAAAATTGACTCAGAGGCCAAGAATGTACTTCCTCCTTCCATCTCCAGGCCACAAAGCCATGATAAGGAAAAACAGAAGAAAACAAAGGGTGTGGCAAAAAAGGAAGTGTTCTGCTCAAACTGCAAGGAAACAGGACATAATAAAGCTACATGCAAGGCAGGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

860

Amino Acids

95.43

Weight (kDa)

6.61

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 24 - 90 1.9e-06 PB1 domain
DBD_Tnp_Mut PF03108 371 - 435 1.1e-17 MuDR family transposase
SWIM PF04434 737 - 765 6.8e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1530, 1542, 2334
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 2386
AccB7I CCANNNNNTGG 3 cut(s) 703, 799, 1763
AccI GTMKAC 1 cut(s) 2087
AccII CGCG 2 cut(s) 759, 1155
AciI CCGC 6 cut(s) 282, 480, 759, 1012, 1806, 2384
AclWI GGATC 2 cut(s) 999, 2220
AcsI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1693
AcuI CTGAAG 5 cut(s) 387, 1101, 1266, 1433, 1439
AdeI CACNNNGTG 2 cut(s) 467, 1098
AfaI GTAC 4 cut(s) 400, 1161, 1485, 2439
AfiI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 1763, 2013, 2457, 2476
AflIII ACRYGT 1 cut(s) 1328
AgeI ACCGGT 1 cut(s) 662
AjnI CCWGG 4 cut(s) 1274, 1343, 1585, 2456
Alw21I GWGCWC 1 cut(s) 1938
Alw26I GTCTC 2 cut(s) 942, 1961
AlwI GGATC 2 cut(s) 999, 2220
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 6 cut(s) 550, 883, 1057, 1751, 2427, 2459
ApeKI GCWGC 9 cut(s) 389, 494, 680, 776, 860, 968, 1802, 2119, 2268
ApoI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1693
AseI ATTAAT 1 cut(s) 2202
AsiGI ACCGGT 1 cut(s) 662
Asp700I GAANNNNTTC 2 cut(s) 1777, 2071
AspLEI GCGC 1 cut(s) 855
AspS9I GGNCC 6 cut(s) 551, 875, 884, 1058, 1752, 1885
AsuC2I CCSGG 2 cut(s) 200, 201
AsuHPI GGTGA 3 cut(s) 444, 1480, 1943
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 2 cut(s) 875, 1885
BanI GGYRCC 1 cut(s) 2386
BbsI GAAGAC 1 cut(s) 2278
Bbv12I GWGCWC 1 cut(s) 1938
BbvI GCAGC 9 cut(s) 376, 481, 667, 763, 847, 955, 1789, 2106, 2255
BceAI ACGGC 1 cut(s) 1502
BciT130I CCWGG 4 cut(s) 1276, 1345, 1587, 2458
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 2 cut(s) 200, 201
BcoDI GTCTC 2 cut(s) 942, 1961
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 2088
BfuAI ACCTGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 6 cut(s) 200, 201, 1276, 1345, 1587, 2458
Bme18I GGWCC 2 cut(s) 875, 1885
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 6 cut(s) 551, 875, 884, 1058, 1752, 1885
BmiI GGNNCC 6 cut(s) 67, 667, 763, 1754, 1886, 2388
BmrFI CCNGG 6 cut(s) 200, 201, 1276, 1345, 1587, 2458
BmrI ACTGGG 4 cut(s) 1125, 1804, 1891, 2265
BmsI GCATC 9 cut(s) 79, 192, 307, 415, 631, 676, 772, 1280, 1492
BmuI ACTGGG 4 cut(s) 1125, 1804, 1891, 2265
BpiI GAAGAC 1 cut(s) 2278
BpmI CTGGAG 5 cut(s) 379, 495, 957, 1685, 2440
BpuEI CTTGAG 3 cut(s) 119, 1464, 1768
BpuMI CCSGG 2 cut(s) 200, 201
BsaBI GATNNNNATC 2 cut(s) 108, 429
BsaJI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1702
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 1763, 2013, 2457, 2476
Bse118I RCCGGY 1 cut(s) 662
Bse3DI GCAATG 3 cut(s) 384, 1176, 2000
Bse8I GATNNNNATC 2 cut(s) 108, 429
BseBI CCWGG 4 cut(s) 1276, 1345, 1587, 2458
BseDI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1702
BseGI GGATG 5 cut(s) 64, 258, 1271, 1357, 1910
BseJI GATNNNNATC 2 cut(s) 108, 429
BseLI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 1763, 2013, 2457, 2476
BseMI GCAATG 3 cut(s) 384, 1176, 2000
BseMII CTCAG 3 cut(s) 1671, 1718, 2436
BseRI GAGGAG 2 cut(s) 99, 1016
BseXI GCAGC 9 cut(s) 376, 481, 667, 763, 847, 955, 1789, 2106, 2255
BsgI GTGCAG 2 cut(s) 805, 2278
Bsh1236I CGCG 2 cut(s) 759, 1155
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 6 cut(s) 552, 885, 1059, 1753, 2429, 2461
BshNI GGYRCC 1 cut(s) 2386
BshTI ACCGGT 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 1938
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 200, 663
BslFI GGGAC 3 cut(s) 503, 589, 1292
BslI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 1763, 2013, 2457, 2476
BsmAI GTCTC 2 cut(s) 942, 1961
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 3 cut(s) 503, 589, 1292
BsmI GAATGC 1 cut(s) 1443
BsnI GGCC 6 cut(s) 552, 885, 1059, 1753, 2429, 2461
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 1938
Bsp143I GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
Bsp19I CCATGG 2 cut(s) 265, 1702
Bsp68I TCGCGA 1 cut(s) 1155
BspACI CCGC 6 cut(s) 282, 480, 759, 1012, 1806, 2384
BspANI GGCC 6 cut(s) 552, 885, 1059, 1753, 2429, 2461
BspCNI CTCAG 3 cut(s) 1672, 1719, 2435
BspFNI CGCG 2 cut(s) 759, 1155
BspHI TCATGA 2 cut(s) 112, 1144
BspLI GGNNCC 6 cut(s) 67, 667, 763, 1754, 1886, 2388
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 999, 2220
BspT107I GGYRCC 1 cut(s) 2386
BsrDI GCAATG 3 cut(s) 384, 1176, 2000
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1702
BssMI GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
BssT1I CCWWGG 3 cut(s) 265, 1553, 1702
Bst2UI CCWGG 4 cut(s) 1276, 1345, 1587, 2458
Bst4CI ACNGT 7 cut(s) 838, 955, 1223, 1468, 1629, 1954, 2380
Bst6I CTCTTC 1 cut(s) 1077
BstC8I GCNNGC 3 cut(s) 550, 1998, 2572
BstDEI CTNAG 7 cut(s) 1680, 1727, 1787, 2037, 2106, 2422, 2577
BstDSI CCRYGG 2 cut(s) 265, 1702
BstEII GGTNACC 1 cut(s) 277
BstF5I GGATG 5 cut(s) 64, 258, 1271, 1357, 1910
BstFNI CGCG 2 cut(s) 759, 1155
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 7 cut(s) 133, 634, 994, 1024, 1849, 2146, 2215
BstMAI GTCTC 2 cut(s) 942, 1961
BstMBI GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 7 cut(s) 326, 686, 782, 2002, 2395, 2532, 2571
BstNI CCWGG 4 cut(s) 1276, 1345, 1587, 2458
BstNSI RCATGY 5 cut(s) 98, 354, 1332, 1874, 2565
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 6 cut(s) 198, 199, 1274, 1343, 1585, 2456
BstSFI CTRYAG 1 cut(s) 2088
BstUI CGCG 2 cut(s) 759, 1155
BstV1I GCAGC 9 cut(s) 376, 481, 667, 763, 847, 955, 1789, 2106, 2255
BstV2I GAAGAC 1 cut(s) 2278
BstX2I RGATCY 1 cut(s) 2212
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 2212
BsuRI GGCC 6 cut(s) 552, 885, 1059, 1753, 2429, 2461
BtgI CCRYGG 2 cut(s) 265, 1702
BtgZI GCGATG 1 cut(s) 1170
BtsCI GGATG 5 cut(s) 64, 258, 1271, 1357, 1910
BtsI GCAGTG 2 cut(s) 855, 1608
BtsIMutI CAGTG 7 cut(s) 38, 238, 855, 1113, 1608, 1950, 2376
BtuMI TCGCGA 1 cut(s) 1155
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 550, 1998, 2572
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 2 cut(s) 112, 1144
CfoI GCGC 1 cut(s) 855
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 6 cut(s) 551, 875, 884, 1058, 1752, 1885
Cfr9I CCCGGG 1 cut(s) 199
Csp6I GTAC 4 cut(s) 399, 1160, 1484, 2438
CspAI ACCGGT 1 cut(s) 662
CspCI CAANNNNNGTGG 4 cut(s) 576, 611, 2484, 2519
CviQI GTAC 4 cut(s) 399, 1160, 1484, 2438
DdeI CTNAG 7 cut(s) 1680, 1727, 1787, 2037, 2106, 2422, 2577
DpnI GATC 7 cut(s) 132, 633, 993, 1023, 1848, 2145, 2214
DpnII GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
DraIII CACNNNGTG 2 cut(s) 467, 1098
Eam1104I CTCTTC 1 cut(s) 1077
EarI CTCTTC 1 cut(s) 1077
Eco130I CCWWGG 3 cut(s) 265, 1553, 1702
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 875, 1885
Eco57I CTGAAG 5 cut(s) 387, 1101, 1266, 1433, 1439
Eco88I CYCGRG 1 cut(s) 199
Eco91I GGTNACC 1 cut(s) 277
EcoO109I RGGNCCY 3 cut(s) 551, 1752, 1885
EcoO65I GGTNACC 1 cut(s) 277
EcoRI GAATTC 3 cut(s) 44, 1263, 1693
EcoRII CCWGG 4 cut(s) 1274, 1343, 1585, 2456
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 265, 1553, 1702
ErhI CCWWGG 3 cut(s) 265, 1553, 1702
Esp3I CGTCTC 1 cut(s) 942
FalI AAGNNNNNCTT 2 cut(s) 1730, 1762
FaqI GGGAC 3 cut(s) 503, 589, 1292
FauNDI CATATG 1 cut(s) 1235
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 2087
FokI GGATG 5 cut(s) 71, 265, 1258, 1344, 1917
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 1 cut(s) 854
GsuI CTGGAG 5 cut(s) 379, 495, 957, 1685, 2440
HaeIII GGCC 6 cut(s) 552, 885, 1059, 1753, 2429, 2461
HapII CCGG 2 cut(s) 200, 663
HhaI GCGC 1 cut(s) 855
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HincII GTYRAC 3 cut(s) 958, 1438, 2341
HindII GTYRAC 3 cut(s) 958, 1438, 2341
HindIII AAGCTT 2 cut(s) 1536, 1732
HpaII CCGG 2 cut(s) 200, 663
HphI GGTGA 3 cut(s) 444, 1480, 1943
Hpy166II GTNNAC 9 cut(s) 697, 755, 793, 958, 1134, 1438, 1471, 2088, 2341
Hpy188I TCNGA 7 cut(s) 942, 1081, 1419, 1728, 1820, 2365, 2425
Hpy8I GTNNAC 9 cut(s) 697, 755, 793, 958, 1134, 1438, 1471, 2088, 2341
Hpy99I CGWCG 1 cut(s) 2067
HpyAV CCTTC 7 cut(s) 49, 531, 566, 843, 1328, 1733, 2457
HpyCH4III ACNGT 7 cut(s) 838, 955, 1223, 1468, 1629, 1954, 2380
HpyCH4IV ACGT 1 cut(s) 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 326, 686, 782, 2002, 2395, 2532, 2571
HpyF3I CTNAG 7 cut(s) 1680, 1727, 1787, 2037, 2106, 2422, 2577
HpySE526I ACGT 1 cut(s) 935
HspAI GCGC 1 cut(s) 853
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
LmnI GCTCC 2 cut(s) 541, 976
Lsp1109I GCAGC 9 cut(s) 376, 481, 667, 763, 847, 955, 1789, 2106, 2255
LweI GCATC 9 cut(s) 79, 192, 307, 415, 631, 676, 772, 1280, 1492
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 1 cut(s) 935
MaeIII GTNAC 7 cut(s) 277, 376, 1090, 1548, 1675, 1812, 2133
MalI GATC 7 cut(s) 132, 633, 993, 1023, 1848, 2145, 2214
MboI GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 2212
MhlI GDGCHC 1 cut(s) 1938
MlyI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1349, 2414
MmeI TCCRAC 3 cut(s) 1102, 1843, 1889
MroXI GAANNNNTTC 2 cut(s) 1777, 2071
MslI CAYNNNNRTG 6 cut(s) 270, 423, 639, 1329, 1767, 1875
MspA1I CMGCKG 2 cut(s) 284, 407
MspI CCGG 2 cut(s) 200, 663
MspR9I CCNGG 6 cut(s) 200, 201, 1276, 1345, 1587, 2458
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 1443
MvaI CCWGG 4 cut(s) 1276, 1345, 1587, 2458
MvnI CGCG 2 cut(s) 759, 1155
MwoI GCNNNNNNNGC 7 cut(s) 326, 686, 782, 2002, 2395, 2532, 2571
NciI CCSGG 2 cut(s) 200, 201
NcoI CCATGG 2 cut(s) 265, 1702
NdeI CATATG 1 cut(s) 1235
NdeII GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
NlaIV GGNNCC 6 cut(s) 67, 667, 763, 1754, 1886, 2388
NmuCI GTSAC 4 cut(s) 376, 1090, 1675, 1812
NruI TCGCGA 1 cut(s) 1155
NspI RCATGY 5 cut(s) 98, 354, 1332, 1874, 2565
PagI TCATGA 2 cut(s) 112, 1144
PciI ACATGT 1 cut(s) 1328
PctI GAATGC 1 cut(s) 1443
PdmI GAANNNNTTC 2 cut(s) 1777, 2071
PfeI GAWTC 3 cut(s) 2072, 2195, 2366
PflFI GACNNNGTC 1 cut(s) 1883
PflMI CCANNNNNTGG 3 cut(s) 703, 799, 1763
PfoI TCCNGGA 1 cut(s) 1343
PinAI ACCGGT 1 cut(s) 662
PleI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1348, 2414
PpsI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1348, 2414
PpuMI RGGWCCY 1 cut(s) 1885
PscI ACATGT 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 2202
PsiI TTATAA 3 cut(s) 1530, 1542, 2334
Psp5II RGGWCCY 1 cut(s) 1885
Psp6I CCWGG 4 cut(s) 1274, 1343, 1585, 2456
PspEI GGTNACC 1 cut(s) 277
PspGI CCWGG 4 cut(s) 1274, 1343, 1585, 2456
PspN4I GGNNCC 6 cut(s) 67, 667, 763, 1754, 1886, 2388
PspPI GGNCC 6 cut(s) 551, 875, 884, 1058, 1752, 1885
PspPPI RGGWCCY 1 cut(s) 1885
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 2212
PsyI GACNNNGTC 1 cut(s) 1883
PvuII CAGCTG 1 cut(s) 407
RruI TCGCGA 1 cut(s) 1155
RsaI GTAC 4 cut(s) 400, 1161, 1485, 2439
RsaNI GTAC 4 cut(s) 399, 1160, 1484, 2438
RseI CAYNNNNRTG 6 cut(s) 270, 423, 639, 1329, 1767, 1875
Sau3AI GATC 7 cut(s) 130, 631, 991, 1021, 1846, 2143, 2212
Sau96I GGNCC 6 cut(s) 551, 875, 884, 1058, 1752, 1885
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1349, 2414
ScrFI CCNGG 6 cut(s) 200, 201, 1276, 1345, 1587, 2458
SduI GDGCHC 1 cut(s) 1938
SfaNI GCATC 9 cut(s) 79, 192, 307, 415, 631, 676, 772, 1280, 1492
SfcI CTRYAG 1 cut(s) 2088
SinI GGWCC 2 cut(s) 875, 1885
SmaI CCCGGG 1 cut(s) 201
SmiMI CAYNNNNRTG 6 cut(s) 270, 423, 639, 1329, 1767, 1875
SmlI CTYRAG 3 cut(s) 134, 1479, 1747
SmoI CTYRAG 3 cut(s) 134, 1479, 1747
SsiI CCGC 6 cut(s) 282, 480, 759, 1012, 1806, 2384
SspI AATATT 1 cut(s) 1597
SspMI CTAG 1 cut(s) 1055
StyD4I CCNGG 6 cut(s) 198, 199, 1274, 1343, 1585, 2456
StyI CCWWGG 3 cut(s) 265, 1553, 1702
TaaI ACNGT 7 cut(s) 838, 955, 1223, 1468, 1629, 1954, 2380
TaiI ACGT 1 cut(s) 938
TaqI TCGA 1 cut(s) 2065
TatI WGTACW 3 cut(s) 398, 1159, 2437
TauI GCSGC 1 cut(s) 1808
TfiI GAWTC 3 cut(s) 2072, 2195, 2366
TscAI CASTG 7 cut(s) 38, 238, 862, 1120, 1615, 1957, 2383
TseFI GTSAC 4 cut(s) 376, 1090, 1675, 1812
TseI GCWGC 9 cut(s) 389, 494, 680, 776, 860, 968, 1802, 2119, 2268
Tsp45I GTSAC 4 cut(s) 376, 1090, 1675, 1812
TspDTI ATGAA 8 cut(s) 129, 407, 1133, 1161, 1751, 1854, 2064, 2177
TspGWI ACGGA 1 cut(s) 2029
TspMI CCCGGG 1 cut(s) 199
TspRI CASTG 7 cut(s) 38, 238, 862, 1120, 1615, 1957, 2383
Tth111I GACNNNGTC 1 cut(s) 1883
Van91I CCANNNNNTGG 3 cut(s) 703, 799, 1763
VpaK11BI GGWCC 2 cut(s) 875, 1885
VspI ATTAAT 1 cut(s) 2202
XapI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1693
XceI RCATGY 5 cut(s) 98, 354, 1332, 1874, 2565
XcmI CCANNNNNNNNNTGG 3 cut(s) 1368, 2206, 2377
XmaI CCCGGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 2087
XmnI GAANNNNTTC 2 cut(s) 1777, 2071
XspI CTAG 1 cut(s) 1055
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.