Rh7CG003100

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000251
Physical Location & Seq
Reverse (-)
287822 .. 288706
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG003100.1

Sequence Viewer

Length: 885 bp
ATGGAGGAGGAGACATTTTTTGTTGGTCAAGAGTTCCCTGATGTAAAAGCGTTTAGGAATGCGATTAAAGAAGCTGCAATTGCCCAACACTTTGAGGTTCGTATAATAAAAAGTGACCTTATCCGGTACTTTGCAAAGTGTGCAGCGGAGGCTTGTCCTTGGCGTATTCGTGCTGTTAAGCTTCCTAATGCGCCGACATTTGCGATAAGAAGCCTTGAAGGGAAGCACACTTGCGGTAGAAATGCGCACAACGAGCACCATCAGGCGTCTATTGATTGGATTGTTAGTTTTATAGAACAACGCCTGCGGGATAACATTAATTACAAGCCGAAGGATATATTGCATGATATCCATCAGCAGTATGGGATTACCATACCTTATAAGCAGGCTTGGCGTGCAAAGGAACGGGGACTTGCTGCGATATATGGATCTTCCGAGGAAGGGTATTGCCTTCTTCCTTCATACTGTGAAGAAATAAAGAAGACCAACCCTGGAAGCATTGCTGAGGTGTTTACTACTGGTCCAGATCACCGGTTCCAGCGGTTATTTGTTTCCTTTTATTCATCCATTTATGGTTTTCTAAATGGTTGCTTGCCTGTTATTGGGCTTGGTGGAATCCATCTTAAGAGCAAATATCTCGGCACCTTACTCTCTGCAACTTCTTTTGATGCTGAAGGGGGTTTATTTCCACTTGCATTTGGTGTTGTTGATGAAGAAAATGATGAGAGCTGGATGTGGTTCTTGTCAGAGTTGCACAAGGCACTAGAGATGAACACCCAAAATATGCCACAGCTCACATTTATATCTGATACACAGAAGGGCATTGCAGACGCTGTGAGAAGGAATTCCCAAATTCTGTACATGATATTTGCATTCGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

294

Amino Acids

33.43

Weight (kDa)

6.37

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 6 - 69 1.5e-23 MuDR family transposase
MULE PF10551 201 - 281 6e-12 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
Acc16I TGCGCA 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 4 cut(s) 146, 234, 307, 541
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 2 cut(s) 844, 852
AcuI CTGAAG 1 cut(s) 693
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 2 cut(s) 128, 860
AfiI CCNNNNNNNGG 2 cut(s) 441, 602
AflII CTTAAG 1 cut(s) 623
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 4 cut(s) 74, 181, 729, 793
AluI AGCT 4 cut(s) 74, 181, 729, 793
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 436
AlwNI CAGNNNCTG 1 cut(s) 833
ApeKI GCWGC 3 cut(s) 74, 143, 416
ApoI RAATTY 2 cut(s) 844, 852
AseI ATTAAT 1 cut(s) 318
AsiGI ACCGGT 1 cut(s) 531
Asp700I GAANNNNTTC 1 cut(s) 844
AspLEI GCGC 2 cut(s) 193, 247
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 641
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 258
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 61, 155, 403
BccI CCATC 3 cut(s) 267, 360, 627
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 764
BfrI CTTAAG 1 cut(s) 623
BisI GCNGC 3 cut(s) 75, 144, 417
BlsI GCNGC 3 cut(s) 76, 145, 418
Bme1390I CCNGG 1 cut(s) 492
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 536, 643
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 266
BsaJI CCNNGG 3 cut(s) 158, 435, 490
BsaWI WCCGGW 2 cut(s) 123, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 602
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 1 cut(s) 523
Bse3DI GCAATG 2 cut(s) 498, 822
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 158, 435, 490
BseGI GGATG 2 cut(s) 563, 738
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 441, 602
BseMI GCAATG 2 cut(s) 498, 822
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 2 cut(s) 20, 23
BseXI GCAGC 3 cut(s) 61, 155, 403
BsgI GTGCAG 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 641
BshTI ACCGGT 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 124, 532
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 441, 602
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 64, 872
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 2 cut(s) 428, 526
BspACI CCGC 4 cut(s) 146, 234, 307, 541
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 536, 643
BspPI GGATC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 498, 822
BsrFI RCCGGY 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 3 cut(s) 158, 435, 490
BssMI GATC 2 cut(s) 428, 526
BssNI GRCGYC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 467
BstACI GRCGYC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 623
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 4 cut(s) 305, 387, 396, 593
BstDEI CTNAG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 563, 738
BstHHI GCGC 2 cut(s) 193, 247
BstKTI GATC 2 cut(s) 431, 529
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 428, 526
BstMWI GCNNNNNNNGC 6 cut(s) 80, 140, 149, 253, 391, 395
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 61, 155, 403
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BtsCI GGATG 2 cut(s) 563, 738
Cac8I GCNNGC 4 cut(s) 305, 387, 396, 593
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 2 cut(s) 193, 247
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 2 cut(s) 255, 839
Csp6I GTAC 2 cut(s) 127, 859
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 2 cut(s) 344, 862
CviJI RGCY 9 cut(s) 74, 152, 181, 213, 328, 389, 607, 729, 793
CviKI_1 RGCY 9 cut(s) 74, 152, 181, 213, 328, 389, 607, 729, 793
CviQI GTAC 2 cut(s) 127, 859
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 430, 528
DpnII GATC 2 cut(s) 428, 526
Eco130I CCWWGG 1 cut(s) 158
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 693
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 490
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 347, 865
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 343, 861
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 75, 144, 417
FokI GGATG 2 cut(s) 550, 745
Fsp4HI GCNGC 3 cut(s) 75, 144, 417
FspAI RTGCGCAY 1 cut(s) 246
FspBI CTAG 1 cut(s) 764
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 192, 246
GluI GCNGC 3 cut(s) 75, 144, 417
HapII CCGG 2 cut(s) 124, 532
HgaI GACGC 2 cut(s) 255, 839
HhaI GCGC 2 cut(s) 193, 247
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 2 cut(s) 347, 865
Hin6I GCGC 2 cut(s) 191, 245
HinP1I GCGC 2 cut(s) 191, 245
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 1 cut(s) 615
HpaII CCGG 2 cut(s) 124, 532
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 3 cut(s) 436, 748, 808
Hpy188III TCNNGA 2 cut(s) 29, 524
Hpy8I GTNNAC 1 cut(s) 513
HpyAV CCTTC 8 cut(s) 212, 325, 434, 461, 468, 668, 811, 834
HpyCH4III ACNGT 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 140, 149, 253, 391, 395
HpyF3I CTNAG 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 347, 865
HspAI GCGC 2 cut(s) 191, 245
Kzo9I GATC 2 cut(s) 428, 526
Lsp1109I GCAGC 3 cut(s) 61, 155, 403
LweI GCATC 1 cut(s) 658
MaeI CTAG 1 cut(s) 764
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 430, 528
MboI GATC 2 cut(s) 428, 526
MboII GAAGA 5 cut(s) 423, 446, 482, 493, 725
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 78, 319, 844, 852
MnlI CCTC 4 cut(s) 88, 142, 430, 499
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 4 cut(s) 66, 177, 318, 624
MspA1I CMGCKG 2 cut(s) 146, 541
MspCI CTTAAG 1 cut(s) 623
MspI CCGG 2 cut(s) 124, 532
MspR9I CCNGG 1 cut(s) 492
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 2 cut(s) 64, 872
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 6 cut(s) 80, 140, 149, 253, 391, 395
NdeII GATC 2 cut(s) 428, 526
NlaIII CATG 2 cut(s) 347, 865
NlaIV GGNNCC 2 cut(s) 536, 643
NmeAIII GCCGAG 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 113
NsbI TGCGCA 1 cut(s) 246
PctI GAATGC 2 cut(s) 64, 872
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 1 cut(s) 615
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 3 cut(s) 76, 145, 418
PshBI ATTAAT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 536, 643
PspPI GGNCC 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 833
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 2 cut(s) 128, 860
RsaNI GTAC 2 cut(s) 127, 859
SaqAI TTAA 4 cut(s) 66, 177, 318, 624
SatI GCNGC 3 cut(s) 75, 144, 417
Sau3AI GATC 2 cut(s) 428, 526
Sau96I GGNCC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 258
SetI ASST 9 cut(s) 76, 99, 120, 183, 379, 510, 647, 731, 795
SfaNI GCATC 1 cut(s) 658
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 4 cut(s) 78, 319, 844, 852
SsiI CCGC 4 cut(s) 146, 234, 307, 541
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 1 cut(s) 490
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 467
TasI AATT 4 cut(s) 78, 319, 844, 852
TatI WGTACW 1 cut(s) 858
TfiI GAWTC 1 cut(s) 615
Tru1I TTAA 4 cut(s) 66, 177, 318, 624
Tru9I TTAA 4 cut(s) 66, 177, 318, 624
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 3 cut(s) 74, 143, 416
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 4 cut(s) 450, 552, 726, 785
Vha464I CTTAAG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 521
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 2 cut(s) 844, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.