FvH4_6g01063

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000251
Physical Location & Seq
Reverse (-)
593633 .. 597526
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01063.t6

Sequence Viewer

Length: 1788 bp
ATGGAAGATCATGCTTTAGTTCCTGTGCCCGATGATTCTCTCACCTTGACGGAATGTGCATTAGCTATTGGGCAAGAATTTCCTGATGTTGAAACTTGCCGAAGAGCATTGAAGGATGTTGCTATTGCAATGCATTTTGATCTTCGTATCGTCAAATCAGATCGAAGCCGGTTTATAGCCAAGTGCTCCAAAGAAGGCTGTCCATGGCGTGTCCATGTAGCAAAATGTCCTGGAGTTCCCACCTTTACAATAAGAACCTTGCAGGGTGAGCATACATGTGAAGGAGTCCGCCACCTTCATCATCAGCAAGCATCAGTAGGTTGGGTTGCTAGGTCCGTGGAAGCTCGAGTTCGGGATAATCCACGGTATAAACCAAAAGAGATCCTGCAAGATATCCGTGATCAGCATGGGGTTGCTGTTTCTTACATGCAAGCATGGCGTGGCAAGGAGCGTAGCATGGCAGCACTTCATGGAACTCTTGAAGAAGGGTATCGCCTTCTTCCTGCATACTGTGACCAAATAAGGAAACACAATCCAGGAAGCATTGCTTCAGTTTTTACCACTGGACAAGACAATTGCTTCCAGCGGCTCTTTGTTTCCTACCGTGCATCAATTTATGGGTTTATACATGCTTGTCGACCACTTTTAGAACTTGACAAAGCACATCTTAAGGGCAAATACCTGGGTACATTGCTCTGTGCTGCATCTGTTGATGCTGATGATGCATTATTTCCACTGGCAATAGCTATTGTTGATGTTGAAAGTGATGAGAATTGGATGTGGTTTATGTCGGAGTTACGGAAGCTTCTTGGAGTAAACACTGACAACATGCCTAGACTTACTATACTCTCTGAAAGACAAAGGGGCATTGTGGAAGCCGTGGAAACTCATTTCCCAAATGCCTTTCATGGTTTTTGTCTGCGCTATGTAAGCGAAAATTTTCGTGATACATTTAAGAACACAAAGTTGGTGAATATCTTCTGGAATGCTGTTTATGCTCTCACTGCAGTTGAATTTGAGAGCAAGATTGCAGAGATGATGGATATCTCGCAAGACGTAATACCATGGTTTCAACACTTCCCTCCTCAGCTTTGGGCTGTAGCATACTTTGAAGGTGTGCGATATGGTCATTTTACCCTCGGGGTTACAGAGCTGCTGTATAATTGGGCCCTTGAATGCCATGAGCTCCCTATTGTGCAAATGATGGAGCATATTCGTCATCAGTTGTCATCGTGGTTTAATGAGCGCAGGGAAATGGGCATGAGGTTGACATCAATTCTAGTACCTTCTGCTGAGAAGCGTGTTCTAGAGGCAGTTGCTGATGCTCGCTGCTATCAAGTGCTTCGCGCAAATGAAGTTGAATTTGAAATTGTATCTACTGAACGGACAAATATTGTGGATATAAGAACTCGAGTGTGCTCCTGTCGTCGTTGGCATATATATGGTTTACCTTGTGCACATGCTGCTGCTGCACTTATTTCCTGTGGACACACTGTCGCTTTATTTGCTGAGCCTTGCTTCACAGTAGCAAGTTACAGAGATACCTATTTACAGATGATTCATCCTATTCCAGATAAGAGCTTATGGAATGAACCCACTGAAGGGACAGAGGGTGGGAGTGCAAAAGTTGATATCATGATTCGTCCGCCCAAGACCAGGCGTCCCCCTGGCAGACCGAAAAAGAAGATCCTTCGTGTAGAGAACTTCAAGCGTCCAAAGAGAGTTGTTCAATGTGGTCGGTGCCATATGTTAGGACATTCTCAAAAGAAATGCACCTTGCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

596

Amino Acids

68.05

Weight (kDa)

8.48

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 55 - 119 1.8e-23 MuDR family transposase
MULE PF10551 251 - 348 1.9e-14 MULE transposase domain
SWIM PF04434 501 - 531 2.1e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1740
AccI GTMKAC 1 cut(s) 637
AccII CGCG 1 cut(s) 1347
AciI CCGC 3 cut(s) 289, 586, 1646
AclWI GGATC 2 cut(s) 376, 1681
AcsI RAATTY 4 cut(s) 77, 937, 1013, 1361
AcuI CTGAAG 2 cut(s) 534, 1620
AcyI GRCGYC 1 cut(s) 1660
AfaI GTAC 2 cut(s) 688, 1284
AfiI CCNNNNNNNGG 3 cut(s) 1601, 1602, 1656
AflII CTTAAG 1 cut(s) 668
AflIII ACRYGT 1 cut(s) 275
AhdI GACNNNNNGTC 2 cut(s) 1493, 1659
AjnI CCWGG 5 cut(s) 229, 535, 681, 1655, 1666
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 8 cut(s) 65, 344, 746, 805, 1090, 1153, 1186, 1581
AluI AGCT 8 cut(s) 65, 344, 746, 805, 1090, 1153, 1186, 1581
Alw21I GWGCWC 4 cut(s) 188, 1188, 1421, 1459
Alw44I GTGCAC 1 cut(s) 1455
AlwI GGATC 2 cut(s) 376, 1681
AlwNI CAGNNNCTG 1 cut(s) 1319
Ama87I CYCGRG 3 cut(s) 345, 1139, 1410
AoxI GGCC 1 cut(s) 1167
ApaI GGGCCC 1 cut(s) 1171
ApaLI GTGCAC 1 cut(s) 1455
ApeKI GCWGC 7 cut(s) 461, 701, 1153, 1329, 1463, 1466, 1469
ApoI RAATTY 4 cut(s) 77, 937, 1013, 1361
Asp700I GAANNNNTTC 2 cut(s) 939, 977
AspLEI GCGC 3 cut(s) 924, 1248, 1349
AspS9I GGNCC 3 cut(s) 333, 1167, 1168
AsuHPI GGTGA 3 cut(s) 34, 278, 982
AvaI CYCGRG 3 cut(s) 345, 1139, 1410
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 3 cut(s) 30, 1171, 1459
BanI GGYRCC 1 cut(s) 1740
BanII GRGCYC 2 cut(s) 1171, 1188
Bbv12I GWGCWC 4 cut(s) 188, 1188, 1421, 1459
BbvCI CCTCAGC 1 cut(s) 1086
BbvI GCAGC 7 cut(s) 473, 688, 1140, 1316, 1450, 1453, 1456
BccI CCATC 2 cut(s) 1033, 1198
BceAI ACGGC 1 cut(s) 863
BciT130I CCWGG 5 cut(s) 231, 537, 683, 1657, 1668
BclI TGATCA 1 cut(s) 400
BfaI CTAG 4 cut(s) 330, 834, 1280, 1307
BfmI CTRYAG 2 cut(s) 1005, 1098
BfrI CTTAAG 1 cut(s) 668
BisI GCNGC 8 cut(s) 462, 587, 702, 1154, 1330, 1464, 1467, 1470
BlpI GCTNAGC 1 cut(s) 1509
BlsI GCNGC 8 cut(s) 463, 588, 703, 1155, 1331, 1465, 1468, 1471
Bme1390I CCNGG 5 cut(s) 231, 537, 683, 1657, 1668
Bme18I GGWCC 1 cut(s) 333
BmeRI GACNNNNNGTC 2 cut(s) 1493, 1659
BmeT110I CYCGRG 3 cut(s) 345, 1139, 1410
BmgT120I GGNCC 3 cut(s) 333, 1167, 1168
BmiI GGNNCC 2 cut(s) 1169, 1742
BmrFI CCNGG 5 cut(s) 231, 537, 683, 1657, 1668
BmsI GCATC 6 cut(s) 320, 617, 703, 712, 713, 1312
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 1086
Bpu1102I GCTNAGC 1 cut(s) 1509
BsaBI GATNNNNATC 1 cut(s) 1043
BsaHI GRCGYC 1 cut(s) 1660
BsaJI CCNNGG 8 cut(s) 203, 336, 362, 682, 879, 1064, 1138, 1666
Bsc4I CCNNNNNNNGG 3 cut(s) 1601, 1602, 1656
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 568, 741
Bse3DI GCAATG 3 cut(s) 135, 543, 689
Bse8I GATNNNNATC 1 cut(s) 1043
BseBI CCWGG 5 cut(s) 231, 537, 683, 1657, 1668
BseDI CCNNGG 8 cut(s) 203, 336, 362, 682, 879, 1064, 1138, 1666
BseGI GGATG 3 cut(s) 121, 783, 1561
BseJI GATNNNNATC 1 cut(s) 1043
BseLI CCNNNNNNNGG 3 cut(s) 1601, 1602, 1656
BseMI GCAATG 3 cut(s) 135, 543, 689
BseMII CTCAG 3 cut(s) 1100, 1284, 1500
BseNI ACTGG 2 cut(s) 568, 741
BseRI GAGGAG 1 cut(s) 1074
BseSI GKGCMC 3 cut(s) 30, 1171, 1459
BseXI GCAGC 7 cut(s) 473, 688, 1140, 1316, 1450, 1453, 1456
BsgI GTGCAG 1 cut(s) 1455
Bsh1236I CGCG 1 cut(s) 1347
BshFI GGCC 1 cut(s) 1169
BshNI GGYRCC 1 cut(s) 1740
BsiHKAI GWGCWC 4 cut(s) 188, 1188, 1421, 1459
BsiHKCI CYCGRG 3 cut(s) 345, 1139, 1410
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 2 cut(s) 1618, 1647
BslI CCNNNNNNNGG 3 cut(s) 1601, 1602, 1656
BsmFI GGGAC 2 cut(s) 1618, 1647
BsmI GAATGC 2 cut(s) 991, 1181
BsnI GGCC 1 cut(s) 1169
BsoBI CYCGRG 3 cut(s) 345, 1139, 1410
Bsp120I GGGCCC 1 cut(s) 1167
Bsp1286I GDGCHC 6 cut(s) 30, 188, 1171, 1188, 1421, 1459
Bsp143I GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
Bsp1720I GCTNAGC 1 cut(s) 1509
Bsp19I CCATGG 2 cut(s) 203, 1064
BspACI CCGC 3 cut(s) 289, 586, 1646
BspANI GGCC 1 cut(s) 1169
BspCNI CTCAG 3 cut(s) 1099, 1285, 1501
BspFNI CGCG 1 cut(s) 1347
BspHI TCATGA 1 cut(s) 1635
BspLI GGNNCC 2 cut(s) 1169, 1742
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 2 cut(s) 376, 1681
BspQI GCTCTTC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 1740
BspTI CTTAAG 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 135, 543, 689
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 2 cut(s) 568, 741
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 8 cut(s) 203, 336, 362, 682, 879, 1064, 1138, 1666
BssMI GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
BssNI GRCGYC 1 cut(s) 1660
BssT1I CCWWGG 2 cut(s) 203, 1064
Bst2UI CCWGG 5 cut(s) 231, 537, 683, 1657, 1668
Bst4CI ACNGT 5 cut(s) 366, 512, 605, 1495, 1525
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 1660
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 1463
BstC8I GCNNGC 3 cut(s) 309, 432, 1327
BstDEI CTNAG 3 cut(s) 1086, 1293, 1509
BstDSI CCRYGG 5 cut(s) 203, 336, 362, 879, 1064
BstF5I GGATG 3 cut(s) 121, 783, 1561
BstFNI CGCG 1 cut(s) 1347
BstHHI GCGC 3 cut(s) 924, 1248, 1349
BstKTI GATC 6 cut(s) 10, 142, 163, 384, 403, 1689
BstMBI GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
BstMWI GCNNNNNNNGC 9 cut(s) 268, 436, 722, 930, 995, 1004, 1463, 1469, 1505
BstNI CCWGG 5 cut(s) 231, 537, 683, 1657, 1668
BstNSI RCATGY 5 cut(s) 279, 430, 632, 832, 1463
BstSCI CCNGG 5 cut(s) 229, 535, 681, 1655, 1666
BstSFI CTRYAG 2 cut(s) 1005, 1098
BstSLI GKGCMC 3 cut(s) 30, 1171, 1459
BstUI CGCG 1 cut(s) 1347
BstV1I GCAGC 7 cut(s) 473, 688, 1140, 1316, 1450, 1453, 1456
BstX2I RGATCY 2 cut(s) 381, 1686
BstYI RGATCY 2 cut(s) 381, 1686
BsuRI GGCC 1 cut(s) 1169
BtgI CCRYGG 5 cut(s) 203, 336, 362, 879, 1064
BtsCI GGATG 3 cut(s) 121, 783, 1561
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 6 cut(s) 561, 734, 819, 1002, 1491, 1596
Cac8I GCNNGC 3 cut(s) 309, 432, 1327
CaiI CAGNNNCTG 1 cut(s) 1319
CciI TCATGA 1 cut(s) 1635
CfoI GCGC 3 cut(s) 924, 1248, 1349
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 333, 1167, 1168
CseI GACGC 2 cut(s) 1649, 1700
Csp6I GTAC 2 cut(s) 687, 1283
CspCI CAANNNNNGTGG 2 cut(s) 1377, 1412
CviQI GTAC 2 cut(s) 687, 1283
DdeI CTNAG 3 cut(s) 1086, 1293, 1509
DpnI GATC 6 cut(s) 9, 141, 162, 383, 402, 1688
DpnII GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
DriI GACNNNNNGTC 2 cut(s) 1493, 1659
Eam1104I CTCTTC 1 cut(s) 97
Eam1105I GACNNNNNGTC 2 cut(s) 1493, 1659
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 2 cut(s) 278, 1635
Ecl136II GAGCTC 1 cut(s) 1186
Eco130I CCWWGG 2 cut(s) 203, 1064
Eco24I GRGCYC 2 cut(s) 1171, 1188
Eco32I GATATC 3 cut(s) 394, 1045, 1633
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 1186
Eco57I CTGAAG 2 cut(s) 534, 1620
Eco88I CYCGRG 3 cut(s) 345, 1139, 1410
EcoICRI GAGCTC 1 cut(s) 1186
EcoO109I RGGNCCY 1 cut(s) 1168
EcoRII CCWGG 5 cut(s) 229, 535, 681, 1655, 1666
EcoRV GATATC 3 cut(s) 394, 1045, 1633
EcoT14I CCWWGG 2 cut(s) 203, 1064
EcoT22I ATGCAT 2 cut(s) 135, 727
EcoT38I GRGCYC 2 cut(s) 1171, 1188
ErhI CCWWGG 2 cut(s) 203, 1064
FalI AAGNNNNNCTT 4 cut(s) 532, 564, 651, 683
FaqI GGGAC 2 cut(s) 1618, 1647
FauNDI CATATG 1 cut(s) 1746
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 637
Fnu4HI GCNGC 8 cut(s) 462, 587, 702, 1154, 1330, 1464, 1467, 1470
FokI GGATG 3 cut(s) 128, 790, 1548
FriOI GRGCYC 2 cut(s) 1171, 1188
Fsp4HI GCNGC 8 cut(s) 462, 587, 702, 1154, 1330, 1464, 1467, 1470
FspBI CTAG 4 cut(s) 330, 834, 1280, 1307
GlaI GCGC 3 cut(s) 923, 1247, 1348
GluI GCNGC 8 cut(s) 462, 587, 702, 1154, 1330, 1464, 1467, 1470
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 1169
HapII CCGG 1 cut(s) 169
HgaI GACGC 2 cut(s) 1649, 1700
HhaI GCGC 3 cut(s) 924, 1248, 1349
Hin1I GRCGYC 1 cut(s) 1660
Hin6I GCGC 3 cut(s) 922, 1246, 1347
HinP1I GCGC 3 cut(s) 922, 1246, 1347
HincII GTYRAC 2 cut(s) 638, 1269
HindII GTYRAC 2 cut(s) 638, 1269
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 4 cut(s) 35, 285, 1558, 1639
HpaII CCGG 1 cut(s) 169
HphI GGTGA 3 cut(s) 34, 278, 982
Hpy166II GTNNAC 6 cut(s) 638, 817, 1269, 1448, 1457, 1487
Hpy188I TCNGA 3 cut(s) 160, 793, 853
Hpy188III TCNNGA 8 cut(s) 83, 353, 479, 944, 982, 1307, 1571, 1636
Hpy8I GTNNAC 6 cut(s) 638, 817, 1269, 1448, 1457, 1487
Hpy99I CGWCG 1 cut(s) 1431
HpyCH4III ACNGT 5 cut(s) 366, 512, 605, 1495, 1525
HpyCH4IV ACGT 1 cut(s) 1056
HpyF10VI GCNNNNNNNGC 9 cut(s) 268, 436, 722, 930, 995, 1004, 1463, 1469, 1505
HpyF3I CTNAG 3 cut(s) 1086, 1293, 1509
HpySE526I ACGT 1 cut(s) 1056
Hsp92I GRCGYC 1 cut(s) 1660
HspAI GCGC 3 cut(s) 922, 1246, 1347
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 5 cut(s) 191, 448, 1191, 1207, 1424
Lsp1109I GCAGC 7 cut(s) 473, 688, 1140, 1316, 1450, 1453, 1456
LweI GCATC 6 cut(s) 320, 617, 703, 712, 713, 1312
MaeI CTAG 4 cut(s) 330, 834, 1280, 1307
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 4 cut(s) 512, 795, 1144, 1532
MalI GATC 6 cut(s) 9, 141, 162, 383, 402, 1688
MboI GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
MboII GAAGA 7 cut(s) 17, 114, 134, 491, 494, 970, 1696
MfeI CAATTG 1 cut(s) 574
MflI RGATCY 2 cut(s) 381, 1686
MhlI GDGCHC 6 cut(s) 30, 188, 1171, 1188, 1421, 1459
MlyI GAGTC 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 6 cut(s) 1092, 1095, 1148, 1257, 1303, 1603
Mph1103I ATGCAT 2 cut(s) 135, 727
MroXI GAANNNNTTC 2 cut(s) 939, 977
MseI TTAA 3 cut(s) 669, 954, 1239
MslI CAYNNNNRTG 2 cut(s) 276, 1440
MspA1I CMGCKG 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 5 cut(s) 231, 537, 683, 1657, 1668
MunI CAATTG 1 cut(s) 574
Mva1269I GAATGC 2 cut(s) 991, 1181
MvaI CCWGG 5 cut(s) 231, 537, 683, 1657, 1668
MvnI CGCG 1 cut(s) 1347
MwoI GCNNNNNNNGC 9 cut(s) 268, 436, 722, 930, 995, 1004, 1463, 1469, 1505
NcoI CCATGG 2 cut(s) 203, 1064
NdeI CATATG 1 cut(s) 1746
NdeII GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
NlaIV GGNNCC 2 cut(s) 1169, 1742
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 2 cut(s) 135, 727
NspI RCATGY 5 cut(s) 279, 430, 632, 832, 1463
PaeR7I CTCGAG 2 cut(s) 345, 1410
PagI TCATGA 1 cut(s) 1635
PciI ACATGT 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 2 cut(s) 991, 1181
PdmI GAANNNNTTC 2 cut(s) 939, 977
PfeI GAWTC 3 cut(s) 35, 1558, 1639
PfoI TCCNGGA 2 cut(s) 229, 535
PkrI GCNGC 8 cut(s) 463, 588, 703, 1155, 1331, 1465, 1468, 1471
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PscI ACATGT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 1188
Psp6I CCWGG 5 cut(s) 229, 535, 681, 1655, 1666
PspGI CCWGG 5 cut(s) 229, 535, 681, 1655, 1666
PspN4I GGNNCC 2 cut(s) 1169, 1742
PspOMI GGGCCC 1 cut(s) 1167
PspPI GGNCC 3 cut(s) 333, 1167, 1168
PspXI VCTCGAGB 2 cut(s) 345, 1410
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 2 cut(s) 381, 1686
RsaI GTAC 2 cut(s) 688, 1284
RsaNI GTAC 2 cut(s) 687, 1283
RseI CAYNNNNRTG 2 cut(s) 276, 1440
SacI GAGCTC 1 cut(s) 1188
SalI GTCGAC 1 cut(s) 636
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 669, 954, 1239
SatI GCNGC 8 cut(s) 462, 587, 702, 1154, 1330, 1464, 1467, 1470
Sau3AI GATC 6 cut(s) 7, 139, 160, 381, 400, 1686
Sau96I GGNCC 3 cut(s) 333, 1167, 1168
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 5 cut(s) 231, 537, 683, 1657, 1668
SduI GDGCHC 6 cut(s) 30, 188, 1171, 1188, 1421, 1459
SfaNI GCATC 6 cut(s) 320, 617, 703, 712, 713, 1312
SfcI CTRYAG 2 cut(s) 1005, 1098
Sfr274I CTCGAG 2 cut(s) 345, 1410
SinI GGWCC 1 cut(s) 333
SlaI CTCGAG 2 cut(s) 345, 1410
SmiMI CAYNNNNRTG 2 cut(s) 276, 1440
SmlI CTYRAG 3 cut(s) 345, 668, 1410
SmoI CTYRAG 3 cut(s) 345, 668, 1410
SsiI CCGC 3 cut(s) 289, 586, 1646
SspI AATATT 1 cut(s) 1393
SspMI CTAG 4 cut(s) 330, 834, 1280, 1307
SstI GAGCTC 1 cut(s) 1188
StyD4I CCNGG 5 cut(s) 229, 535, 681, 1655, 1666
StyI CCWWGG 2 cut(s) 203, 1064
TaaI ACNGT 5 cut(s) 366, 512, 605, 1495, 1525
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 4 cut(s) 163, 346, 637, 1411
TaqII GACCGA 1 cut(s) 1690
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 3 cut(s) 35, 1558, 1639
Tru1I TTAA 3 cut(s) 669, 954, 1239
Tru9I TTAA 3 cut(s) 669, 954, 1239
TscAI CASTG 6 cut(s) 568, 741, 826, 1009, 1498, 1603
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 7 cut(s) 461, 701, 1153, 1329, 1463, 1466, 1469
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 6 cut(s) 287, 458, 896, 1368, 1550, 1605
TspGWI ACGGA 5 cut(s) 65, 325, 386, 814, 1399
TspRI CASTG 6 cut(s) 568, 741, 826, 1009, 1498, 1603
Vha464I CTTAAG 1 cut(s) 668
VneI GTGCAC 1 cut(s) 1455
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 4 cut(s) 77, 937, 1013, 1361
XbaI TCTAGA 1 cut(s) 1306
XceI RCATGY 5 cut(s) 279, 430, 632, 832, 1463
XhoI CTCGAG 2 cut(s) 345, 1410
XmiI GTMKAC 1 cut(s) 637
XmnI GAANNNNTTC 2 cut(s) 939, 977
XspI CTAG 4 cut(s) 330, 834, 1280, 1307
Zsp2I ATGCAT 2 cut(s) 135, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.