FvH4_6g02501

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000251
Physical Location & Seq
Forward (+)
1453847 .. 1459367
5521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02501.t1

Sequence Viewer

Length: 2262 bp
ATGGCCAACCATGATTTGATAGTTGGACGAAATCACACTACAGCACTTAGGCAGAATCAGCAGATACTGGGCCACAACCGTAACCTAGGCACTCATGACCATCATCTGGGCTCAGCACAGGCTCATGAGCATCACTTGGATATGGGAGATAACAGGGATGACCTAGGTTTAGACCATCCTCATGACCACGAATTGGGTTTAGAACAGGACCAAGACCACGAAGGAGATGATGGTCACAGCTACAGACATGAAAATGAGTTAGGTATGGACCGGAAACCTGATCTGGATGACCATGGATTGTCTATTCCTCCTCAGAACCATGACTTGGTTTTAGTTGAGAATAATGAGCTGGCTGTCTCAGACGATCAAGAACTTGAAGGAAGTATGGAACTGGCCATGGATCAACATCATGAAATGGGCATAGAATCTATGCATGATATGAGTATCCAGGACTCCCAGCTGGCACTTAGCCCCAATCCCGTACTTCAGGCTCGTATGGCTGTTGCAAATCCTCATTATGAGTTGGTAGTGGGGCAAGAATTTCCTGATGTCAAGAGCTGCCGGAGAGCTTTGAGGGACACAGCTATTGCCCTGCACTTTGAAATGCAGACTATTAAATCTGACAAGACTCGCTTCACTGCCAAGTGTGCCAGTGAGGGATGCCCATGGCGTATACATGCTGCAAAGCTCCCAGGAGTTCCAACTTTCACAATCAGGACCATCCACGAGACTCATACATGTGGAGGAATTTATCATCTTGGTCATCAGCAAGCCTCTGTTCAGTGGGTTGCAAATTCTGTGGAGCAACGACTTAGAGAGAACCCAAATTACAAGCCAAAGGAGATACTGGAAGAGATTCACCGAGTTCATGGTATCACCTTATCATACAAGCAAGCTTGGCGAGGCAAGGAGCGCATCATGGCAGCAATGCGTGGATCATTTGAAGAAGGGTATCGCTTGCTTCCAGAATATTGTGAACAGGTCAAACGAACTAACCCAGGGAGTATTGCATCTGTTTATGGAAACCCGAGTGATAACTGCTTCCAGCGCCTCTTCATATCATTTCAGGCATCAATTTATGGTTTCTTAAACGCTTGTCGGCCCCTCCTCGGGCTTGATAGGACACATTTGAAAAGTAAGTATCTGGGTACTTTGCTTCTTGCTACCGGTTTCGATGGTGACGGTTCTCTATTTCCTGTGGCATTTGGGGTTGTAGACGAGGAGAGTGATGAGAATTGGATGTGGTTTCTTTCTGAGCTTCATAATCTGCTTGAGCTTAATTCAGAGAACATGCCTAGGCTTACCATTTTGTCAGACAGGCAGAAAGGCATTGTAGATGGAGTTGAAGTAAACTTTCCTACTGCTTTTCATGGATTTTGCATGCGTCACCTGAGTGATAGTTTTCGTAAGGAGTTTAATAACACAATGCTCGTTAATCTTCTATGGGAAGCTGCTCATGCTCTCACTGTAATTGAATTTGAAGCAAAAGTTTTAGAGATAGAAGAGATATCTCAAGATGCTGCATATTGGATCAGACGAATTCCACCTCGCTTATGGGCTACTGCTTACTTTGAGGGAACACGGTTTGGGCATTTGACAGCTAACATAGTTGAATCCTTAAATACTTGGATATTGGAGGCCTCTGGGCTTCCAATTGTTCAGATGATGGAATGCATCAGAAGGCAGCTAATGACTTGGTTCAATGAACGTCGAGAGACCAGTATGCAGTGGACATCTATTCTTGTTCCTTCCGCAGAGAGGCGTGTTGCGGAGGCTCTTGAGCGGGGGCGCACCTATCAGGTTCTTCGTGCTAATGAAGCTGAATTTGAAGTCATTTCTCATGAAGGGACAATGATTGTGGACATTCGAAATCGTTGCTGCCTTTGTCGTGGCTGGCAGCTTTATGGTTTGCCATGTGCCCATGCTGTTGCAGCACTTCTATCTTGCAGGCAGCAAGTCCATCGGTTTACTGAGAGCTGCTTCACTGTTGCAACCTATCGGAAGACATACTCACAAACAATACATCCAATTCCAGATAAATCCCTATGGGCTGAGACGTTAAGGGTAGAGGGAGAAGATCCCAATGCAAGCAGTGCTCTTTCTGAGGTTCTAATCAATCCTCCGAAGTCACTCCGGCCACCAGGTCGACCAAGAAAGAAGCGTGTCCGAGCAGAGGACCGTGGCCGAGTGAAGCGAGTAGTGCATTGTAGTCGCTGCAATCAAACAGGCCACTTCAGAACCACATGTGCCGCCCCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

754

Amino Acids

85.83

Weight (kDa)

6.07

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 174 - 238 1.2e-27 MuDR family transposase
MULE PF10551 370 - 465 4.4e-19 MULE transposase domain
SWIM PF04434 621 - 649 4.3e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 106, 193, 325
AccBSI CCGCTC 1 cut(s) 1783
AccI GTMKAC 3 cut(s) 673, 1215, 2146
AciI CCGC 4 cut(s) 1752, 1769, 1783, 2250
AclWI GGATC 4 cut(s) 408, 943, 1538, 2072
AcoI YGGCCR 4 cut(s) 3, 393, 2135, 2182
AcsI RAATTY 6 cut(s) 539, 747, 793, 1475, 1539, 1823
AcuI CTGAAG 2 cut(s) 470, 2218
AfaI GTAC 2 cut(s) 483, 1150
AfiI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 1109, 1110, 1758, 2173
AflIII ACRYGT 2 cut(s) 737, 2243
AgeI ACCGGT 1 cut(s) 1166
AjnI CCWGG 4 cut(s) 447, 691, 997, 2140
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AleI CACNNNNGTG 1 cut(s) 1392
Alw21I GWGCWC 1 cut(s) 2098
Alw26I GTCTC 4 cut(s) 361, 722, 1709, 2048
AlwI GGATC 4 cut(s) 408, 943, 1538, 2072
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 2 cut(s) 1027, 1109
AoxI GGCC 8 cut(s) 3, 70, 393, 1100, 1638, 2135, 2182, 2227
ApoI RAATTY 6 cut(s) 539, 747, 793, 1475, 1539, 1823
AsiGI ACCGGT 1 cut(s) 1166
Asp700I GAANNNNTTC 1 cut(s) 855
AspA2I CCTAGG 3 cut(s) 85, 163, 1295
AspLEI GCGC 3 cut(s) 915, 1050, 1791
AspS9I GGNCC 6 cut(s) 70, 208, 268, 717, 1101, 2176
AsuHPI GGTGA 4 cut(s) 851, 868, 1190, 1379
AsuII TTCGAA 1 cut(s) 1867
AvaI CYCGRG 2 cut(s) 1027, 1109
AvaII GGWCC 4 cut(s) 208, 268, 717, 2176
AvrII CCTAGG 3 cut(s) 85, 163, 1295
BaeGI GKGCMC 1 cut(s) 1921
BalI TGGCCA 2 cut(s) 5, 395
BanII GRGCYC 1 cut(s) 113
BauI CACGAG 1 cut(s) 725
BbsI GAAGAC 1 cut(s) 2009
Bbv12I GWGCWC 1 cut(s) 2098
BccI CCATC 8 cut(s) 108, 183, 224, 728, 1169, 1331, 1660, 1968
BcgI CGANNNNNNTGC 6 cut(s) 1857, 1891, 1943, 1977, 2192, 2226
BciT130I CCWGG 4 cut(s) 449, 693, 999, 2142
BciVI GTATCC 1 cut(s) 455
BcoDI GTCTC 4 cut(s) 361, 722, 1709, 2048
BfaI CTAG 3 cut(s) 86, 164, 1296
BfmI CTRYAG 2 cut(s) 39, 241
BfoI RGCGCY 1 cut(s) 1051
BfuI GTATCC 1 cut(s) 455
BlnI CCTAGG 3 cut(s) 85, 163, 1295
BlpI GCTNAGC 1 cut(s) 112
Bme1390I CCNGG 4 cut(s) 449, 693, 999, 2142
Bme18I GGWCC 4 cut(s) 208, 268, 717, 2176
BmeT110I CYCGRG 2 cut(s) 1027, 1109
BmgT120I GGNCC 6 cut(s) 70, 208, 268, 717, 1101, 2176
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 4 cut(s) 449, 693, 999, 2142
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 7 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 2009
Bpu1102I GCTNAGC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 1867
BpuEI CTTGAG 3 cut(s) 1292, 1497, 1799
BsaBI GATNNNNATC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 1709
BsaWI WCCGGW 2 cut(s) 270, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 1332, 1362
Bsc4I CCNNNNNNNGG 7 cut(s) 106, 193, 325, 1109, 1110, 1758, 2173
Bse118I RCCGGY 1 cut(s) 1166
Bse1I ACTGG 5 cut(s) 72, 396, 651, 852, 1719
Bse3DI GCAATG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 4 cut(s) 449, 693, 999, 2142
BseGI GGATG 7 cut(s) 163, 175, 292, 665, 720, 1245, 2023
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 1109, 1110, 1758, 2173
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 8 cut(s) 126, 326, 372, 1245, 1382, 1962, 2043, 2094
BseNI ACTGG 5 cut(s) 72, 396, 651, 852, 1719
BseRI GAGGAG 3 cut(s) 300, 1097, 1235
BseSI GKGCMC 1 cut(s) 1921
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 8 cut(s) 5, 72, 395, 1102, 1640, 2137, 2184, 2229
BshTI ACCGGT 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 2098
BsiHKCI CYCGRG 2 cut(s) 1027, 1109
BsiSI CCGG 4 cut(s) 271, 562, 1167, 2134
BslFI GGGAC 2 cut(s) 590, 1861
BslI CCNNNNNNNGG 7 cut(s) 106, 193, 325, 1109, 1110, 1758, 2173
BsmAI GTCTC 4 cut(s) 361, 722, 1709, 2048
BsmBI CGTCTC 1 cut(s) 2048
BsmFI GGGAC 2 cut(s) 590, 1861
BsmI GAATGC 1 cut(s) 1676
BsnI GGCC 8 cut(s) 5, 72, 395, 1102, 1640, 2137, 2184, 2229
Bso31I GGTCTC 1 cut(s) 1709
BsoBI CYCGRG 2 cut(s) 1027, 1109
Bsp119I TTCGAA 1 cut(s) 1867
Bsp1286I GDGCHC 3 cut(s) 113, 1921, 2098
Bsp143I GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
Bsp1720I GCTNAGC 1 cut(s) 112
Bsp19I CCATGG 3 cut(s) 292, 396, 665
BspACI CCGC 4 cut(s) 1752, 1769, 1783, 2250
BspANI GGCC 8 cut(s) 5, 72, 395, 1102, 1640, 2137, 2184, 2229
BspCNI CTCAG 8 cut(s) 125, 325, 371, 1246, 1383, 1963, 2044, 2095
BspHI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
BspLI GGNNCC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 408, 943, 1538, 2072
BspT104I TTCGAA 1 cut(s) 1867
BspTNI GGTCTC 1 cut(s) 1709
BsrBI CCGCTC 1 cut(s) 1783
BsrDI GCAATG 1 cut(s) 933
BsrFI RCCGGY 1 cut(s) 1166
BsrI ACTGG 5 cut(s) 72, 396, 651, 852, 1719
BssAI RCCGGY 1 cut(s) 1166
BssMI GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
BssNAI GTATAC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 725
BssT1I CCWWGG 6 cut(s) 85, 163, 292, 396, 665, 1295
Bst1107I GTATAC 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 725
Bst2UI CCWGG 4 cut(s) 449, 693, 999, 2142
Bst4CI ACNGT 6 cut(s) 80, 1184, 1468, 1584, 1987, 2180
Bst6I CTCTTC 3 cut(s) 846, 1058, 1497
BstAPI GCANNNNNTGC 1 cut(s) 2093
BstBI TTCGAA 1 cut(s) 1867
BstC8I GCNNGC 9 cut(s) 351, 462, 771, 894, 959, 1382, 1895, 1949, 2089
BstDSI CCRYGG 4 cut(s) 292, 396, 665, 2179
BstF5I GGATG 7 cut(s) 163, 175, 292, 665, 720, 1245, 2023
BstH2I RGCGCY 1 cut(s) 1051
BstHHI GCGC 3 cut(s) 915, 1050, 1791
BstKTI GATC 6 cut(s) 283, 367, 403, 938, 1533, 2080
BstMAI GTCTC 4 cut(s) 361, 722, 1709, 2048
BstMBI GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
BstNI CCWGG 4 cut(s) 449, 693, 999, 2142
BstNSI RCATGY 5 cut(s) 680, 741, 1294, 1384, 2247
BstSCI CCNGG 4 cut(s) 447, 691, 997, 2140
BstSFI CTRYAG 2 cut(s) 39, 241
BstSLI GKGCMC 1 cut(s) 1921
BstV2I GAAGAC 1 cut(s) 2009
BstX2I RGATCY 1 cut(s) 2077
BstYI RGATCY 1 cut(s) 2077
BstZ17I GTATAC 1 cut(s) 674
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 8 cut(s) 5, 72, 395, 1102, 1640, 2137, 2184, 2229
BtgI CCRYGG 4 cut(s) 292, 396, 665, 2179
BtsCI GGATG 7 cut(s) 163, 175, 292, 665, 720, 1245, 2023
BtsI GCAGTG 3 cut(s) 636, 1733, 2098
BtsIMutI CAGTG 7 cut(s) 636, 658, 788, 1464, 1733, 1983, 2098
Cac8I GCNNGC 9 cut(s) 351, 462, 771, 894, 959, 1382, 1895, 1949, 2089
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
CfoI GCGC 3 cut(s) 915, 1050, 1791
Cfr10I RCCGGY 1 cut(s) 1166
Cfr13I GGNCC 6 cut(s) 70, 208, 268, 717, 1101, 2176
CseI GACGC 1 cut(s) 1373
CsiI ACCWGGT 1 cut(s) 2140
Csp6I GTAC 2 cut(s) 482, 1149
CspAI ACCGGT 1 cut(s) 1166
CspCI CAANNNNNGTGG 4 cut(s) 780, 815, 1839, 1874
CviQI GTAC 2 cut(s) 482, 1149
DpnI GATC 6 cut(s) 282, 366, 402, 937, 1532, 2079
DpnII GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
EaeI YGGCCR 4 cut(s) 3, 393, 2135, 2182
Eam1104I CTCTTC 3 cut(s) 846, 1058, 1497
EarI CTCTTC 3 cut(s) 846, 1058, 1497
Eco130I CCWWGG 6 cut(s) 85, 163, 292, 396, 665, 1295
Eco147I AGGCCT 1 cut(s) 1640
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 1709
Eco32I GATATC 1 cut(s) 1509
Eco47I GGWCC 4 cut(s) 208, 268, 717, 2176
Eco57I CTGAAG 2 cut(s) 470, 2218
Eco88I CYCGRG 2 cut(s) 1027, 1109
EcoRI GAATTC 1 cut(s) 1539
EcoRII CCWGG 4 cut(s) 447, 691, 997, 2140
EcoRV GATATC 1 cut(s) 1509
EcoT14I CCWWGG 6 cut(s) 85, 163, 292, 396, 665, 1295
EcoT22I ATGCAT 2 cut(s) 435, 1676
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 6 cut(s) 85, 163, 292, 396, 665, 1295
Esp3I CGTCTC 1 cut(s) 2048
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 2 cut(s) 590, 1861
FauI CCCGC 1 cut(s) 1776
FblI GTMKAC 3 cut(s) 673, 1215, 2146
FokI GGATG 7 cut(s) 162, 170, 299, 672, 707, 1252, 2010
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 3 cut(s) 86, 164, 1296
GlaI GCGC 3 cut(s) 914, 1049, 1790
GsaI CCCAGC 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 1051
HaeIII GGCC 8 cut(s) 5, 72, 395, 1102, 1640, 2137, 2184, 2229
HapII CCGG 4 cut(s) 271, 562, 1167, 2134
HgaI GACGC 1 cut(s) 1373
HhaI GCGC 3 cut(s) 915, 1050, 1791
Hin6I GCGC 3 cut(s) 913, 1048, 1789
HinP1I GCGC 3 cut(s) 913, 1048, 1789
HincII GTYRAC 1 cut(s) 2147
HindII GTYRAC 1 cut(s) 2147
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 7 cut(s) 55, 425, 452, 628, 730, 856, 1613
HpaII CCGG 4 cut(s) 271, 562, 1167, 2134
HphI GGTGA 4 cut(s) 851, 868, 1190, 1379
Hpy166II GTNNAC 8 cut(s) 674, 977, 1216, 1351, 1731, 1861, 1968, 2147
Hpy8I GTNNAC 8 cut(s) 674, 977, 1216, 1351, 1731, 1861, 1968, 2147
Hpy99I CGWCG 1 cut(s) 1713
HpyAV CCTTC 6 cut(s) 215, 371, 941, 1674, 1758, 1838
HpyCH4III ACNGT 6 cut(s) 80, 1184, 1468, 1584, 1987, 2180
HpyCH4IV ACGT 2 cut(s) 1708, 2057
HpySE526I ACGT 2 cut(s) 1708, 2057
HspAI GCGC 3 cut(s) 913, 1048, 1789
Kzo9I GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
LmnI GCTCC 3 cut(s) 693, 802, 910
LweI GCATC 7 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683
MabI ACCWGGT 1 cut(s) 2140
MaeI CTAG 3 cut(s) 86, 164, 1296
MaeII ACGT 2 cut(s) 1708, 2057
MaeIII GTNAC 5 cut(s) 80, 233, 1178, 1385, 2127
MalI GATC 6 cut(s) 282, 366, 402, 937, 1532, 2079
MbiI CCGCTC 1 cut(s) 1783
MboI GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
MboII GAAGA 8 cut(s) 863, 956, 1045, 1430, 1514, 1796, 2014, 2087
MfeI CAATTG 1 cut(s) 1653
MflI RGATCY 1 cut(s) 2077
MhlI GDGCHC 3 cut(s) 113, 1921, 2098
MlsI TGGCCA 2 cut(s) 5, 395
MluNI TGGCCA 2 cut(s) 5, 395
MlyI GAGTC 3 cut(s) 446, 622, 724
MmeI TCCRAC 2 cut(s) 4, 725
Mox20I TGGCCA 2 cut(s) 5, 395
Mph1103I ATGCAT 2 cut(s) 435, 1676
MroXI GAANNNNTTC 1 cut(s) 855
MscI TGGCCA 2 cut(s) 5, 395
MseI TTAA 7 cut(s) 615, 1088, 1278, 1416, 1434, 1619, 2060
MslI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
Msp20I TGGCCA 2 cut(s) 5, 395
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 4 cut(s) 271, 562, 1167, 2134
MspR9I CCNGG 4 cut(s) 449, 693, 999, 2142
MunI CAATTG 1 cut(s) 1653
Mva1269I GAATGC 1 cut(s) 1676
MvaI CCWGG 4 cut(s) 449, 693, 999, 2142
NcoI CCATGG 3 cut(s) 292, 396, 665
NdeII GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
NlaIV GGNNCC 1 cut(s) 1103
NmeAIII GCCGAG 1 cut(s) 2210
NmuCI GTSAC 4 cut(s) 233, 1178, 1385, 2127
NsiI ATGCAT 2 cut(s) 435, 1676
NspI RCATGY 5 cut(s) 680, 741, 1294, 1384, 2247
NspV TTCGAA 1 cut(s) 1867
OliI CACNNNNGTG 1 cut(s) 1392
PaeI GCATGC 1 cut(s) 1384
PagI TCATGA 5 cut(s) 94, 124, 181, 409, 1840
PasI CCCWGGG 1 cut(s) 998
PceI AGGCCT 1 cut(s) 1640
PciI ACATGT 2 cut(s) 737, 2243
PctI GAATGC 1 cut(s) 1676
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 4 cut(s) 55, 425, 856, 1613
PflMI CCANNNNNTGG 3 cut(s) 106, 193, 325
PfoI TCCNGGA 1 cut(s) 447
PinAI ACCGGT 1 cut(s) 1166
PleI GAGTC 3 cut(s) 446, 622, 724
PpsI GAGTC 3 cut(s) 446, 622, 724
PscI ACATGT 2 cut(s) 737, 2243
Psp6I CCWGG 4 cut(s) 447, 691, 997, 2140
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 4 cut(s) 447, 691, 997, 2140
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 6 cut(s) 70, 208, 268, 717, 1101, 2176
PsrI GAACNNNNNNTAC 2 cut(s) 812, 844
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 2077
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 483, 1150
RsaNI GTAC 2 cut(s) 482, 1149
RseI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
SalI GTCGAC 1 cut(s) 2145
SaqAI TTAA 7 cut(s) 615, 1088, 1278, 1416, 1434, 1619, 2060
Sau3AI GATC 6 cut(s) 280, 364, 400, 935, 1530, 2077
Sau96I GGNCC 6 cut(s) 70, 208, 268, 717, 1101, 2176
SchI GAGTC 3 cut(s) 446, 622, 724
ScrFI CCNGG 4 cut(s) 449, 693, 999, 2142
SduI GDGCHC 3 cut(s) 113, 1921, 2098
SexAI ACCWGGT 1 cut(s) 2140
SfaNI GCATC 7 cut(s) 139, 650, 924, 1019, 1079, 1507, 1683
SfcI CTRYAG 2 cut(s) 39, 241
SfuI TTCGAA 1 cut(s) 1867
SinI GGWCC 4 cut(s) 208, 268, 717, 2176
SmiMI CAYNNNNRTG 4 cut(s) 180, 252, 738, 1392
SmlI CTYRAG 3 cut(s) 1271, 1512, 1778
SmoI CTYRAG 3 cut(s) 1271, 1512, 1778
SphI GCATGC 1 cut(s) 1384
SseBI AGGCCT 1 cut(s) 1640
SsiI CCGC 4 cut(s) 1752, 1769, 1783, 2250
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 86, 164, 1296
StuI AGGCCT 1 cut(s) 1640
StyD4I CCNGG 4 cut(s) 447, 691, 997, 2140
StyI CCWWGG 6 cut(s) 85, 163, 292, 396, 665, 1295
TaaI ACNGT 6 cut(s) 80, 1184, 1468, 1584, 1987, 2180
TaiI ACGT 2 cut(s) 1711, 2060
TaqI TCGA 4 cut(s) 1173, 1711, 1867, 2146
TauI GCSGC 1 cut(s) 2252
TfiI GAWTC 4 cut(s) 55, 425, 856, 1613
Tru1I TTAA 7 cut(s) 615, 1088, 1278, 1416, 1434, 1619, 2060
Tru9I TTAA 7 cut(s) 615, 1088, 1278, 1416, 1434, 1619, 2060
TscAI CASTG 7 cut(s) 643, 658, 788, 1471, 1733, 1990, 2098
TseFI GTSAC 4 cut(s) 233, 1178, 1385, 2127
Tsp45I GTSAC 4 cut(s) 233, 1178, 1385, 2127
TspDTI ATGAA 9 cut(s) 264, 426, 857, 1045, 1250, 1358, 1719, 1830, 1857
TspRI CASTG 7 cut(s) 643, 658, 788, 1471, 1733, 1990, 2098
Van91I CCANNNNNTGG 3 cut(s) 106, 193, 325
VpaK11BI GGWCC 4 cut(s) 208, 268, 717, 2176
XapI RAATTY 6 cut(s) 539, 747, 793, 1475, 1539, 1823
XceI RCATGY 5 cut(s) 680, 741, 1294, 1384, 2247
XcmI CCANNNNNNNNNTGG 1 cut(s) 1551
XmaJI CCTAGG 3 cut(s) 85, 163, 1295
XmiI GTMKAC 3 cut(s) 673, 1215, 2146
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 3 cut(s) 86, 164, 1296
Zsp2I ATGCAT 2 cut(s) 435, 1676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.