Rroxscaffold_7G00214340

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000251
Physical Location & Seq
Reverse (-)
64959044 .. 64961506
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214340.1

Sequence Viewer

Length: 1008 bp
ATGTGGTTCTTGTCAGAGTTGCACAAGGCACTAGAGATGAACACCCAGAATATGCCACAGCTCACATTTATATCTGATACACAGAAGGGCATTGCAGACGCAGTGAGAAGGAAATTCCCAAATTCTGTACATGATATTTGCATTCGCCACTTGAGTGAAAGCATTGGGAAAGAATTCAAGAACCCAAGGCTTGTTCATCTATTATGGAAAGCTGCACAAGCCACTACGACGATTGGTTTCAAAGAAAAAATGGCTGAAATAGAGGAGGTTTCTTTAGATGCTGCAAAATGGCTGCAACAATTTCATCCTTCCCGCTGGGCATTTGTGTATTTTGAAGGAACACATTATGGTCATTTCTCATCAAATATTGAAGAGTTCAATAAATGGATTCTGGAAGCTCGTGAATTGCCCATAATCCAGGTGATTGAGAGGATTCACGGTAAATTGATGACGGAGTTTGAAGAACGGCGTAAGCAAAGTAATTCTTGGTTTTCCTTACTTGCTCCATCTGCTGAGAACTATATTTTAGAAGCCATCAGCCGTGCATCCACATATCAGGTCCTTAGATCTGATCAAGTTGAATTTGAGGTCCTCTCAGCTGATCGATCAGACATTGTGAATATTGGAACCCATTGTTGTTCCTGCCGCGAATGGCAGCTATATGGTTTACCATGTTCCCATGCTGTTGCTGCCCTCATATCATGTCAGAAAGATGTATATGCCTTTACAGAGAAATGTTTTACTGCAGCAAGTTACCGTGAGGCGTATGCTGGAGAGATATATCCCATTGAAGCAAAACCCCGATGGGTAAAGACAGAAGAGGCTGCAATGACTGATGATGATGATAATCGAGTTTTTGTGCGACCTCCTAAGATTCGTAGACTGCCAGGGCGCCCCGAAAAGAAACGGGTTTGTGTAGAAGACATTAATCCTGGCAAACATACTGTACGTTGCAGTCTCTGTAATCAGACCGGACATTATAAGACAACCTGCAAAGAGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

335

Amino Acids

38.82

Weight (kDa)

7.58

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 2 - 52 8.1e-07 MULE transposase domain
SWIM PF04434 206 - 235 7.3e-11 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
Acc36I ACCTGC 1 cut(s) 998
AccB1I GGYRCC 1 cut(s) 891
AccI GTMKAC 1 cut(s) 880
AccII CGCG 1 cut(s) 648
AciI CCGC 2 cut(s) 313, 646
AcsI RAATTY 4 cut(s) 113, 121, 173, 581
AcyI GRCGYC 1 cut(s) 892
AfaI GTAC 2 cut(s) 129, 948
AgsI TTSAA 8 cut(s) 178, 241, 335, 371, 379, 461, 581, 791
AjnI CCWGG 3 cut(s) 417, 886, 931
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 5 cut(s) 61, 212, 398, 599, 658
AluI AGCT 5 cut(s) 61, 212, 398, 599, 658
Alw26I GTCTC 1 cut(s) 962
AlwNI CAGNNNCTG 1 cut(s) 960
ApeKI GCWGC 7 cut(s) 212, 281, 292, 655, 689, 746, 824
ApoI RAATTY 4 cut(s) 113, 121, 173, 581
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 559, 589
AsuHPI GGTGA 1 cut(s) 433
AvaII GGWCC 2 cut(s) 559, 589
BanI GGYRCC 1 cut(s) 891
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 927
BbvI GCAGC 7 cut(s) 199, 268, 279, 667, 676, 758, 811
BccI CCATC 3 cut(s) 514, 542, 798
BceAI ACGGC 2 cut(s) 482, 525
BciT130I CCWGG 3 cut(s) 419, 888, 933
BclI TGATCA 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 895
BfuAI ACCTGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 566
BisI GCNGC 8 cut(s) 213, 282, 293, 646, 656, 690, 747, 825
BlsI GCNGC 8 cut(s) 214, 283, 294, 647, 657, 691, 748, 826
Bme1390I CCNGG 3 cut(s) 419, 888, 933
Bme18I GGWCC 2 cut(s) 559, 589
BmgT120I GGNCC 2 cut(s) 559, 589
BmiI GGNNCC 2 cut(s) 628, 893
BmrFI CCNGG 3 cut(s) 419, 888, 933
BmsI GCATC 2 cut(s) 268, 554
BpiI GAAGAC 1 cut(s) 927
BplI GAGNNNNNCTC 2 cut(s) 578, 610
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 604
BsaBI GATNNNNATC 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 892
BsaJI CCNNGG 2 cut(s) 185, 887
BsaWI WCCGGW 1 cut(s) 971
Bse3DI GCAATG 2 cut(s) 90, 834
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 3 cut(s) 419, 888, 933
BseCI ATCGAT 1 cut(s) 604
BseDI CCNNGG 2 cut(s) 185, 887
BseGI GGATG 2 cut(s) 304, 545
BseJI GATNNNNATC 1 cut(s) 846
BseMI GCAATG 2 cut(s) 90, 834
BseMII CTCAG 2 cut(s) 504, 609
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 7 cut(s) 199, 268, 279, 667, 676, 758, 811
BseYI CCCAGC 1 cut(s) 315
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 891
BshVI ATCGAT 1 cut(s) 604
BsiSI CCGG 1 cut(s) 972
BsmAI GTCTC 1 cut(s) 962
BsmI GAATGC 1 cut(s) 141
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 4 cut(s) 566, 571, 601, 605
BspACI CCGC 2 cut(s) 313, 646
BspCNI CTCAG 2 cut(s) 505, 608
BspDI ATCGAT 1 cut(s) 604
BspFNI CGCG 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 628, 893
BspMAI CTGCAG 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 998
BspT107I GGYRCC 1 cut(s) 891
BsrDI GCAATG 2 cut(s) 90, 834
BsrGI TGTACA 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 185, 887
BssMI GATC 4 cut(s) 566, 571, 601, 605
BssNI GRCGYC 1 cut(s) 892
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 3 cut(s) 419, 888, 933
Bst4CI ACNGT 3 cut(s) 440, 758, 946
Bst6I CTCTTC 2 cut(s) 366, 813
BstACI GRCGYC 1 cut(s) 892
BstAUI TGTACA 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 513, 563, 595, 870
BstF5I GGATG 2 cut(s) 304, 545
BstFNI CGCG 1 cut(s) 648
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 4 cut(s) 569, 574, 604, 608
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 4 cut(s) 566, 571, 601, 605
BstMWI GCNNNNNNNGC 3 cut(s) 218, 509, 689
BstNI CCWGG 3 cut(s) 419, 888, 933
BstSCI CCNGG 3 cut(s) 417, 886, 931
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 7 cut(s) 199, 268, 279, 667, 676, 758, 811
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 604
BsuTUI ATCGAT 1 cut(s) 604
BtsCI GGATG 2 cut(s) 304, 545
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 998
CaiI CAGNNNCTG 1 cut(s) 960
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 559, 589
ClaI ATCGAT 1 cut(s) 604
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 128, 947
CviAII CATG 4 cut(s) 131, 672, 680, 702
CviQI GTAC 2 cut(s) 128, 947
DdeI CTNAG 4 cut(s) 513, 563, 595, 870
DinI GGCGCC 1 cut(s) 893
DpnI GATC 4 cut(s) 568, 573, 603, 607
DpnII GATC 4 cut(s) 566, 571, 601, 605
Eam1104I CTCTTC 2 cut(s) 366, 813
EarI CTCTTC 2 cut(s) 366, 813
Eco130I CCWWGG 1 cut(s) 185
Eco47I GGWCC 2 cut(s) 559, 589
EcoO109I RGGNCCY 2 cut(s) 559, 589
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 417, 886, 931
EcoT14I CCWWGG 1 cut(s) 185
EgeI GGCGCC 1 cut(s) 893
EheI GGCGCC 1 cut(s) 893
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 4 cut(s) 134, 675, 683, 705
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FatI CATG 4 cut(s) 130, 671, 679, 701
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 8 cut(s) 213, 282, 293, 646, 656, 690, 747, 825
FokI GGATG 2 cut(s) 291, 532
Fsp4HI GCNGC 8 cut(s) 213, 282, 293, 646, 656, 690, 747, 825
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 893
GluI GCNGC 8 cut(s) 213, 282, 293, 646, 656, 690, 747, 825
GsaI CCCAGC 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 1 cut(s) 895
HapII CCGG 1 cut(s) 972
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 894
Hin1I GRCGYC 1 cut(s) 892
Hin1II CATG 4 cut(s) 134, 675, 683, 705
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HinfI GANTC 4 cut(s) 388, 433, 874, 1002
HpaII CCGG 1 cut(s) 972
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 2 cut(s) 668, 881
Hpy188I TCNGA 7 cut(s) 16, 76, 571, 610, 708, 969, 1007
Hpy188III TCNNGA 3 cut(s) 178, 392, 401
Hpy8I GTNNAC 2 cut(s) 668, 881
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 4 cut(s) 79, 102, 318, 329
HpyCH4III ACNGT 3 cut(s) 440, 758, 946
HpyCH4IV ACGT 1 cut(s) 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 509, 689
HpyF3I CTNAG 4 cut(s) 513, 563, 595, 870
HpySE526I ACGT 1 cut(s) 949
Hsp92I GRCGYC 1 cut(s) 892
Hsp92II CATG 4 cut(s) 134, 675, 683, 705
HspAI GCGC 1 cut(s) 892
KasI GGCGCC 1 cut(s) 891
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 566, 571, 601, 605
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 7 cut(s) 199, 268, 279, 667, 676, 758, 811
LweI GCATC 2 cut(s) 268, 554
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 949
MaeIII GTNAC 1 cut(s) 752
MalI GATC 4 cut(s) 568, 573, 603, 607
MboI GATC 4 cut(s) 566, 571, 601, 605
MboII GAAGA 4 cut(s) 383, 473, 830, 932
MflI RGATCY 1 cut(s) 566
MluCI AATT 8 cut(s) 113, 121, 173, 299, 404, 443, 481, 581
Mly113I GGCGCC 1 cut(s) 892
MnlI CCTC 9 cut(s) 256, 259, 423, 580, 602, 704, 754, 814, 876
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 2 cut(s) 315, 599
MspI CCGG 1 cut(s) 972
MspR9I CCNGG 3 cut(s) 419, 888, 933
Mva1269I GAATGC 1 cut(s) 141
MvaI CCWGG 3 cut(s) 419, 888, 933
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 3 cut(s) 218, 509, 689
NarI GGCGCC 1 cut(s) 892
NdeII GATC 4 cut(s) 566, 571, 601, 605
NlaIII CATG 4 cut(s) 134, 675, 683, 705
NlaIV GGNNCC 2 cut(s) 628, 893
OliI CACNNNNGTG 1 cut(s) 153
PctI GAATGC 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 4 cut(s) 388, 433, 874, 1002
PkrI GCNGC 8 cut(s) 214, 283, 294, 647, 657, 691, 748, 826
PluTI GGCGCC 1 cut(s) 895
PpuMI RGGWCCY 2 cut(s) 559, 589
PshBI ATTAAT 1 cut(s) 927
PsiI TTATAA 1 cut(s) 981
Psp5II RGGWCCY 2 cut(s) 559, 589
Psp6I CCWGG 3 cut(s) 417, 886, 931
PspFI CCCAGC 1 cut(s) 315
PspGI CCWGG 3 cut(s) 417, 886, 931
PspN4I GGNNCC 2 cut(s) 628, 893
PspPI GGNCC 2 cut(s) 559, 589
PspPPI RGGWCCY 2 cut(s) 559, 589
PstI CTGCAG 1 cut(s) 748
PstNI CAGNNNCTG 1 cut(s) 960
PsuI RGATCY 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 2 cut(s) 129, 948
RsaNI GTAC 2 cut(s) 128, 947
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 927
SatI GCNGC 8 cut(s) 213, 282, 293, 646, 656, 690, 747, 825
Sau3AI GATC 4 cut(s) 566, 571, 601, 605
Sau96I GGNCC 2 cut(s) 559, 589
ScrFI CCNGG 3 cut(s) 419, 888, 933
SfaNI GCATC 2 cut(s) 268, 554
SfcI CTRYAG 1 cut(s) 744
SfoI GGCGCC 1 cut(s) 893
SinI GGWCC 2 cut(s) 559, 589
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 8 cut(s) 113, 121, 173, 299, 404, 443, 481, 581
SsiI CCGC 2 cut(s) 313, 646
SspDI GGCGCC 1 cut(s) 891
SspI AATATT 2 cut(s) 367, 622
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 417, 886, 931
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 3 cut(s) 440, 758, 946
TaiI ACGT 1 cut(s) 952
TaqI TCGA 2 cut(s) 604, 850
TasI AATT 8 cut(s) 113, 121, 173, 299, 404, 443, 481, 581
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 4 cut(s) 388, 433, 874, 1002
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 1 cut(s) 108
TseI GCWGC 7 cut(s) 212, 281, 292, 655, 689, 746, 824
TspDTI ATGAA 3 cut(s) 53, 185, 293
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 559, 589
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 4 cut(s) 113, 121, 173, 581
XmiI GTMKAC 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.