pycom16g11960

plant mutator transposase zinc finger

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
8354534 .. 8356857
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11960.1

Sequence Viewer

Length: 2097 bp
ATGTCCATCAAGTACTTCCTTCCCGGCAATACAAAGACTCTCATTACGATCTCTAAAGACAAGGACTTGCAACGTATGGTCAATTTTCTCGGGGATACAAACACTGTCTATGTTTTTGTGATGACAGAGGAAGCTGCTATTAGAAATTTGTCCAACATGCCTGCTAGTAGGTCAAGCAGGACAACCGTATCGGAAGCAGTGGTTCCTATTGTCGACCCTGTTGATACGCGAATTGATACCGACAATACTGACAATGCCGATGGCCAGATTGATATGGAACTCCAGGAAATCCCTTCACTTTCTGTTCCTGGCTGTTCCAGTGATGATAAGCATCATAAGGCTGCACAACAGTGGGAAAACACCATCACCGGTGTGGACCAAAGGTTTAATAGTTTTAGCGAATTCCGAGAAGCATTGCATAAGTTTTCAATTGCGCATGGATTTGCTTATAGGTATAAGAAAAATGACAGTCACCGTGTCACTGTCAAATGCAAAGGTCAAAATTGCCCATGGAGGATATATGCATCAAGGTTGTCTACTACCCAGTTGATTTGTATTAAGAAAATGAACACGGATCATACATGTGAAGGAGCTGCTGTGAAAGCTGGGTATAGGGCAACGAGAGGTTGGGTGGGAAGTATCATAAAAGAGAAGTTGAAAGTTTCCCCAAACTACAAGCCAAAGGCTATAGCAGAGGACATTAAGCGAGAGTACGGGATTCAATTGAATTATTCTCAGGCATGGCGTGCCAAAGAGATTGCCAGGGAGCAGCTTCAAGGCTCCTATAAAGAGGCCTATAATCAGTTGCCATATTTCTGCGAGAAGATAAAAGAAACTAATCCAGGAAGTTTTGCTTCATTTGCAACTAAGGAAGACTCAAGCTTCCATCGTTTCTTTGTATCTTTCCGTGCATCAATTGTGGGTTTCAAAGAAGGTTGCCGCCCTCTAATTTTTCTTGATAGTGCTCCTCTGAACTCAAAATATCAAGGAGTTTTGTTGGCTGCAACAACTGCAGATGCTGATGATGGTGTGTTTCCAGTAGCATTTTCTATTGTGGATGCTGAGACTGATGAGAACTGGCATTGGTTCTTACTAGAACTGAAATCGGCAGTGGCAACATCTCAGCCGATCACATTTGTAGCAGATTTTCAGAATGGATTGAAAAATTCATTGCCCGAGGTATTTGATAAATGTTACCACTGCTATTGTTTGAGGCATCTTGCTGAAAAACTTAACAAGGACTTGAAGGGGCAATTTTCTCACGAGGCAAGACGATTCATGATAAGTGATTTTTATGCGGCTGCTTATGCACCCACTCGGGAGGCTTTCCAGCACAGTGTTGACAACATAAAAAATATTTCACCGGATGCTTACAATTGGGTCATACAAAGTGAGCCAGTGCACTGGGCTAATGCATTCTGCGGAGGAGGCAGGTACAACCACATGACTTCAAACTTCGGACAGCAGTTCTACAGTTGGGTATCAGAGGCGCATGAGTTGCCAATTACGCAGATGATTGACGTATTACGAGGCAATACGATGCAAGCCTTCTATTCACGTGGGGTGGAGTCCAATCAGTGGGTGACAAGATTAACACCATCAAAGGAGGAAAATCTTCAAAAGGAAACGGAAATTGCTCGATCGCTTCAAGTGTTACTCTCACATGGTAGCACTTTTGAGGTTCGTGGAGAATCTGTCGACAGTGTTGACATCGACCATTGGGATTGCACCTGTAAGGGATGGCAACTCACTGGTCTTCCTTGCTGCCATGCTATTGCTGTCTTTATAACTATTGGCAGGAACCCTTATGATTACTGCTCCAGATACTTCACGGTGGAGAGTTACCGTTTAACTTATGCAGAATCAATTCACCCTGTTCCGAATGTAGACAGACCACACACAGATGAATCAAACCAAGTAGTAGTTACTGTTACCCCTCCGCCCACCAGGCGGCCGCCAGGGCGGCCAAAGATGAAGCAGACGGAATCAGACGACATAATAAAACGCCAGCTGCAATGTAGCAAGTGCAAGGGGCTCGGCCACAATAAGAAGACATGTAAAGATTCTAGCATTGTTCAAGGGACGTTGTTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

699

Amino Acids

79.09

Weight (kDa)

7.78

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 121 - 186 4e-25 MuDR family transposase
MULE PF10551 318 - 409 2.2e-14 MULE transposase domain
SWIM PF04434 569 - 598 3.5e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1787
Acc16I TGCGCA 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 1422
AccB7I CCANNNNNTGG 1 cut(s) 1578
AccI GTMKAC 4 cut(s) 213, 536, 1698, 1887
AccII CGCG 1 cut(s) 229
AciI CCGC 7 cut(s) 940, 1298, 1422, 1940, 1951, 1955, 1963
AclWI GGATC 1 cut(s) 582
AcoI YGGCCR 4 cut(s) 262, 1952, 1964, 2038
AcsI RAATTY 3 cut(s) 145, 401, 1165
AcvI CACGTG 1 cut(s) 1559
AfaI GTAC 3 cut(s) 14, 713, 1436
AfiI CCNNNNNNNGG 2 cut(s) 1578, 1950
AflIII ACRYGT 2 cut(s) 581, 2054
AgeI ACCGGT 1 cut(s) 368
AjnI CCWGG 6 cut(s) 282, 307, 761, 841, 1946, 1957
AleI CACNNNNGTG 2 cut(s) 349, 371
AluBI AGCT 6 cut(s) 134, 593, 605, 772, 882, 2011
AluI AGCT 6 cut(s) 134, 593, 605, 772, 882, 2011
Alw21I GWGCWC 2 cut(s) 967, 1404
Alw26I GTCTC 1 cut(s) 1058
Alw44I GTGCAC 1 cut(s) 1400
AlwI GGATC 1 cut(s) 582
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 3 cut(s) 89, 1175, 1317
AoxI GGCC 5 cut(s) 262, 792, 1952, 1964, 2038
ApaLI GTGCAC 1 cut(s) 1400
ApeKI GCWGC 8 cut(s) 134, 341, 593, 769, 1001, 1301, 1764, 2011
ApoI RAATTY 3 cut(s) 145, 401, 1165
AsiGI ACCGGT 1 cut(s) 368
Asp700I GAANNNNTTC 2 cut(s) 1614, 1866
AspLEI GCGC 2 cut(s) 436, 1492
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 5 cut(s) 358, 464, 1353, 1594, 1862
AvaI CYCGRG 3 cut(s) 89, 1175, 1317
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 1404
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BalI TGGCCA 1 cut(s) 264
BanII GRGCYC 1 cut(s) 2037
BauI CACGAG 1 cut(s) 1262
BbrPI CACGTG 1 cut(s) 1559
BbsI GAAGAC 3 cut(s) 879, 1748, 2057
Bbv12I GWGCWC 2 cut(s) 967, 1404
BbvI GCAGC 8 cut(s) 121, 328, 580, 781, 988, 1288, 1751, 1998
BccI CCATC 7 cut(s) 14, 254, 371, 894, 1019, 1606, 1734
BcgI CGANNNNNNTGC 2 cut(s) 2017, 2051
BciT130I CCWGG 6 cut(s) 284, 309, 763, 843, 1948, 1959
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 1058
BfaI CTAG 3 cut(s) 165, 1094, 2067
BfmI CTRYAG 3 cut(s) 687, 1011, 1471
BfuAI ACCTGC 1 cut(s) 1422
BfuI GTATCC 1 cut(s) 88
BglI GCCNNNNNGGC 3 cut(s) 1948, 1960, 1963
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 7 cut(s) 24, 284, 309, 763, 843, 1948, 1959
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 3 cut(s) 89, 1175, 1317
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 3 cut(s) 204, 781, 1802
BmrFI CCNGG 7 cut(s) 24, 284, 309, 763, 843, 1948, 1959
BmrI ACTGGG 2 cut(s) 538, 1414
BmsI GCATC 8 cut(s) 340, 533, 920, 1006, 1048, 1225, 1357, 1530
BmuI ACTGGG 2 cut(s) 538, 1414
BpiI GAAGAC 3 cut(s) 879, 1748, 2057
BpmI CTGGAG 2 cut(s) 266, 1804
BpuEI CTTGAG 1 cut(s) 862
BpuMI CCSGG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 1559
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 509, 762, 1176, 1958
BsaWI WCCGGW 2 cut(s) 368, 1363
BsaXI ACNNNNNCTCC 4 cut(s) 582, 612, 1680, 1710
Bsc4I CCNNNNNNNGG 2 cut(s) 1578, 1950
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 7 cut(s) 318, 544, 1037, 1082, 1397, 1409, 1756
Bse3DI GCAATG 3 cut(s) 413, 1169, 2021
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 6 cut(s) 284, 309, 763, 843, 1948, 1959
BseDI CCNNGG 4 cut(s) 509, 762, 1176, 1958
BseGI GGATG 3 cut(s) 1063, 1372, 1745
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 1578, 1950
BseMI GCAATG 3 cut(s) 413, 1169, 2021
BseMII CTCAG 3 cut(s) 749, 1053, 1136
BseNI ACTGG 7 cut(s) 318, 544, 1037, 1082, 1397, 1409, 1756
BseRI GAGGAG 2 cut(s) 957, 1440
BseSI GKGCMC 1 cut(s) 1404
BseX3I CGGCCG 1 cut(s) 1952
BseXI GCAGC 8 cut(s) 121, 328, 580, 781, 988, 1288, 1751, 1998
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 2 cut(s) 1643, 1955
BshFI GGCC 5 cut(s) 264, 794, 1954, 1966, 2040
BshTI ACCGGT 1 cut(s) 368
BsiEI CGRYCG 2 cut(s) 1643, 1955
BsiHKAI GWGCWC 2 cut(s) 967, 1404
BsiHKCI CYCGRG 3 cut(s) 89, 1175, 1317
BsiSI CCGG 3 cut(s) 24, 369, 1364
BslI CCNNNNNNNGG 2 cut(s) 1578, 1950
BsmAI GTCTC 1 cut(s) 1058
BsmI GAATGC 1 cut(s) 1415
BsnI GGCC 5 cut(s) 264, 794, 1954, 1966, 2040
BsoBI CYCGRG 3 cut(s) 89, 1175, 1317
Bsp1286I GDGCHC 3 cut(s) 967, 1404, 2037
Bsp143I GATC 4 cut(s) 48, 574, 1128, 1640
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 7 cut(s) 940, 1298, 1422, 1940, 1951, 1955, 1963
BspANI GGCC 5 cut(s) 264, 794, 1954, 1966, 2040
BspCNI CTCAG 3 cut(s) 748, 1054, 1135
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 1278
BspLI GGNNCC 3 cut(s) 204, 781, 1802
BspMAI CTGCAG 1 cut(s) 1015
BspMI ACCTGC 1 cut(s) 1422
BspPI GGATC 1 cut(s) 582
BsrDI GCAATG 3 cut(s) 413, 1169, 2021
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 7 cut(s) 318, 544, 1037, 1082, 1397, 1409, 1756
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 4 cut(s) 509, 762, 1176, 1958
BssMI GATC 4 cut(s) 48, 574, 1128, 1640
BssSI CACGAG 1 cut(s) 1262
BssT1I CCWWGG 1 cut(s) 509
Bst2BI CACGAG 1 cut(s) 1262
Bst2UI CCWGG 6 cut(s) 284, 309, 763, 843, 1948, 1959
BstAPI GCANNNNNTGC 3 cut(s) 746, 1010, 1498
BstBAI YACGTR 1 cut(s) 1559
BstC8I GCNNGC 4 cut(s) 162, 747, 1545, 2009
BstDEI CTNAG 4 cut(s) 735, 867, 1062, 1122
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 3 cut(s) 1063, 1372, 1745
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 2 cut(s) 436, 1492
BstKTI GATC 4 cut(s) 51, 577, 1131, 1643
BstMAI GTCTC 1 cut(s) 1058
BstMBI GATC 4 cut(s) 48, 574, 1128, 1640
BstMCI CGRYCG 2 cut(s) 1643, 1955
BstNI CCWGG 6 cut(s) 284, 309, 763, 843, 1948, 1959
BstNSI RCATGY 3 cut(s) 160, 585, 2058
BstSCI CCNGG 7 cut(s) 22, 282, 307, 761, 841, 1946, 1957
BstSFI CTRYAG 3 cut(s) 687, 1011, 1471
BstSLI GKGCMC 1 cut(s) 1404
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 8 cut(s) 121, 328, 580, 781, 988, 1288, 1751, 1998
BstV2I GAAGAC 3 cut(s) 879, 1748, 2057
BstXI CCANNNNNNTGG 1 cut(s) 1404
BstZI CGGCCG 1 cut(s) 1952
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 5 cut(s) 264, 794, 1954, 1966, 2040
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 3 cut(s) 1063, 1372, 1745
BtsI GCAGTG 3 cut(s) 204, 1116, 1198
BveI ACCTGC 1 cut(s) 1422
Cac8I GCNNGC 4 cut(s) 162, 747, 1545, 2009
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 1278
CciNI GCGGCCGC 1 cut(s) 1952
CfoI GCGC 2 cut(s) 436, 1492
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 13, 712, 1435
CspAI ACCGGT 1 cut(s) 368
CspCI CAANNNNNGTGG 2 cut(s) 1187, 1222
CviQI GTAC 3 cut(s) 13, 712, 1435
DdeI CTNAG 4 cut(s) 735, 867, 1062, 1122
DpnI GATC 4 cut(s) 50, 576, 1130, 1642
DpnII GATC 4 cut(s) 48, 574, 1128, 1640
EaeI YGGCCR 4 cut(s) 262, 1952, 1964, 2038
EagI CGGCCG 1 cut(s) 1952
EciI GGCGGA 1 cut(s) 1929
EclXI CGGCCG 1 cut(s) 1952
Eco130I CCWWGG 1 cut(s) 509
Eco147I AGGCCT 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 2037
Eco47I GGWCC 1 cut(s) 376
Eco52I CGGCCG 1 cut(s) 1952
Eco72I CACGTG 1 cut(s) 1559
Eco88I CYCGRG 3 cut(s) 89, 1175, 1317
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 6 cut(s) 282, 307, 761, 841, 1946, 1957
EcoT14I CCWWGG 1 cut(s) 509
EcoT22I ATGCAT 2 cut(s) 526, 1417
EcoT38I GRGCYC 1 cut(s) 2037
ErhI CCWWGG 1 cut(s) 509
FalI AAGNNNNNCTT 2 cut(s) 838, 870
FblI GTMKAC 4 cut(s) 213, 536, 1698, 1887
FokI GGATG 3 cut(s) 1070, 1379, 1752
FriOI GRGCYC 1 cut(s) 2037
FspBI CTAG 3 cut(s) 165, 1094, 2067
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 2 cut(s) 435, 1491
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 266, 1804
HaeIII GGCC 5 cut(s) 264, 794, 1954, 1966, 2040
HapII CCGG 3 cut(s) 24, 369, 1364
HhaI GCGC 2 cut(s) 436, 1492
Hin6I GCGC 2 cut(s) 434, 1490
HinP1I GCGC 2 cut(s) 434, 1490
HincII GTYRAC 4 cut(s) 214, 1342, 1699, 1708
HindII GTYRAC 4 cut(s) 214, 1342, 1699, 1708
HindIII AAGCTT 1 cut(s) 880
HpaII CCGG 3 cut(s) 24, 369, 1364
HphI GGTGA 5 cut(s) 358, 464, 1353, 1594, 1862
Hpy166II GTNNAC 8 cut(s) 214, 376, 537, 1342, 1402, 1699, 1708, 1888
Hpy188I TCNGA 8 cut(s) 193, 407, 972, 1152, 1460, 1486, 1881, 1990
Hpy188III TCNNGA 5 cut(s) 956, 1262, 1279, 1319, 1821
Hpy8I GTNNAC 8 cut(s) 214, 376, 537, 1342, 1402, 1699, 1708, 1888
HpyAV CCTTC 6 cut(s) 29, 303, 581, 926, 1240, 1558
HpyCH4IV ACGT 4 cut(s) 73, 1521, 1558, 2084
HpyF3I CTNAG 4 cut(s) 735, 867, 1062, 1122
HpySE526I ACGT 4 cut(s) 73, 1521, 1558, 2084
HspAI GCGC 2 cut(s) 434, 1490
Kzo9I GATC 4 cut(s) 48, 574, 1128, 1640
LmnI GCTCC 5 cut(s) 590, 766, 785, 970, 1823
Lsp1109I GCAGC 8 cut(s) 121, 328, 580, 781, 988, 1288, 1751, 1998
LweI GCATC 8 cut(s) 340, 533, 920, 1006, 1048, 1225, 1357, 1530
MaeI CTAG 3 cut(s) 165, 1094, 2067
MaeII ACGT 4 cut(s) 73, 1521, 1558, 2084
MaeIII GTNAC 8 cut(s) 470, 478, 1193, 1582, 1653, 1841, 1924, 1930
MalI GATC 4 cut(s) 50, 576, 1130, 1642
MboI GATC 4 cut(s) 48, 574, 1128, 1640
MboII GAAGA 5 cut(s) 835, 884, 1607, 1748, 2062
MfeI CAATTG 4 cut(s) 429, 722, 915, 1375
MhlI GDGCHC 3 cut(s) 967, 1404, 2037
MlsI TGGCCA 1 cut(s) 264
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 3 cut(s) 31, 869, 1577
MmeI TCCRAC 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 264
Mph1103I ATGCAT 2 cut(s) 526, 1417
MroXI GAANNNNTTC 2 cut(s) 1614, 1866
MscI TGGCCA 1 cut(s) 264
MseI TTAA 7 cut(s) 387, 558, 702, 1233, 1592, 1850, 2090
MslI CAYNNNNRTG 4 cut(s) 349, 371, 582, 1902
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 2011
MspI CCGG 3 cut(s) 24, 369, 1364
MspR9I CCNGG 7 cut(s) 24, 284, 309, 763, 843, 1948, 1959
MunI CAATTG 4 cut(s) 429, 722, 915, 1375
Mva1269I GAATGC 1 cut(s) 1415
MvaI CCWGG 6 cut(s) 284, 309, 763, 843, 1948, 1959
MvnI CGCG 1 cut(s) 229
NciI CCSGG 1 cut(s) 24
NcoI CCATGG 1 cut(s) 509
NdeII GATC 4 cut(s) 48, 574, 1128, 1640
NlaIV GGNNCC 3 cut(s) 204, 781, 1802
NmeAIII GCCGAG 1 cut(s) 2016
NmuCI GTSAC 3 cut(s) 470, 478, 1582
NotI GCGGCCGC 1 cut(s) 1952
NsbI TGCGCA 1 cut(s) 435
NsiI ATGCAT 2 cut(s) 526, 1417
NspI RCATGY 3 cut(s) 160, 585, 2058
OliI CACNNNNGTG 2 cut(s) 349, 371
PagI TCATGA 1 cut(s) 1278
PceI AGGCCT 1 cut(s) 794
PciI ACATGT 2 cut(s) 581, 2054
PctI GAATGC 1 cut(s) 1415
PdmI GAANNNNTTC 2 cut(s) 1614, 1866
PfeI GAWTC 7 cut(s) 718, 1275, 1691, 1862, 1907, 1985, 2063
PflMI CCANNNNNTGG 1 cut(s) 1578
PfoI TCCNGGA 2 cut(s) 282, 841
PinAI ACCGGT 1 cut(s) 368
Ple19I CGATCG 1 cut(s) 1643
PleI GAGTC 3 cut(s) 31, 869, 1576
PmaCI CACGTG 1 cut(s) 1559
PmlI CACGTG 1 cut(s) 1559
PpsI GAGTC 3 cut(s) 31, 869, 1576
Ppu21I YACGTR 1 cut(s) 1559
PscI ACATGT 2 cut(s) 581, 2054
PsiI TTATAA 1 cut(s) 1787
Psp6I CCWGG 6 cut(s) 282, 307, 761, 841, 1946, 1957
PspCI CACGTG 1 cut(s) 1559
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 6 cut(s) 282, 307, 761, 841, 1946, 1957
PspN4I GGNNCC 3 cut(s) 204, 781, 1802
PspPI GGNCC 1 cut(s) 376
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 1019
PvuI CGATCG 1 cut(s) 1643
PvuII CAGCTG 1 cut(s) 2011
RsaI GTAC 3 cut(s) 14, 713, 1436
RsaNI GTAC 3 cut(s) 13, 712, 1435
RseI CAYNNNNRTG 4 cut(s) 349, 371, 582, 1902
SalI GTCGAC 2 cut(s) 212, 1697
SaqAI TTAA 7 cut(s) 387, 558, 702, 1233, 1592, 1850, 2090
Sau3AI GATC 4 cut(s) 48, 574, 1128, 1640
Sau96I GGNCC 1 cut(s) 376
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 3 cut(s) 31, 869, 1577
ScrFI CCNGG 7 cut(s) 24, 284, 309, 763, 843, 1948, 1959
SduI GDGCHC 3 cut(s) 967, 1404, 2037
SfaNI GCATC 8 cut(s) 340, 533, 920, 1006, 1048, 1225, 1357, 1530
SfcI CTRYAG 3 cut(s) 687, 1011, 1471
SgrAI CRCCGGYG 1 cut(s) 368
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 4 cut(s) 349, 371, 582, 1902
SmlI CTYRAG 1 cut(s) 877
SmoI CTYRAG 1 cut(s) 877
SseBI AGGCCT 1 cut(s) 794
SsiI CCGC 7 cut(s) 940, 1298, 1422, 1940, 1951, 1955, 1963
SspI AATATT 1 cut(s) 1357
SspMI CTAG 3 cut(s) 165, 1094, 2067
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 7 cut(s) 22, 282, 307, 761, 841, 1946, 1957
StyI CCWWGG 1 cut(s) 509
TaiI ACGT 4 cut(s) 76, 1524, 1561, 2087
TaqI TCGA 4 cut(s) 213, 1639, 1698, 1713
TatI WGTACW 1 cut(s) 12
TauI GCSGC 5 cut(s) 942, 1301, 1954, 1957, 1966
TfiI GAWTC 7 cut(s) 718, 1275, 1691, 1862, 1907, 1985, 2063
Tru1I TTAA 7 cut(s) 387, 558, 702, 1233, 1592, 1850, 2090
Tru9I TTAA 7 cut(s) 387, 558, 702, 1233, 1592, 1850, 2090
TseFI GTSAC 3 cut(s) 470, 478, 1582
TseI GCWGC 8 cut(s) 134, 341, 593, 769, 1001, 1301, 1764, 2011
Tsp45I GTSAC 3 cut(s) 470, 478, 1582
TspDTI ATGAA 6 cut(s) 581, 846, 1158, 1267, 1920, 1988
TspGWI ACGGA 4 cut(s) 587, 896, 1643, 1997
Van91I CCANNNNNTGG 1 cut(s) 1578
VneI GTGCAC 1 cut(s) 1400
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 3 cut(s) 145, 401, 1165
XceI RCATGY 3 cut(s) 160, 585, 2058
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmiI GTMKAC 4 cut(s) 213, 536, 1698, 1887
XmnI GAANNNNTTC 2 cut(s) 1614, 1866
XspI CTAG 3 cut(s) 165, 1094, 2067
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 526, 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.