MuDR family transposase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1563 |
| AccB1I | GGYRCC | 1 cut(s) | 1845 |
| AccI | GTMKAC | 1 cut(s) | 742 |
| AciI | CCGC | 2 cut(s) | 394, 691 |
| AclWI | GGATC | 1 cut(s) | 481 |
| AcsI | RAATTY | 5 cut(s) | 182, 1042, 1118, 1407, 1466 |
| AcuI | CTGAAG | 1 cut(s) | 639 |
| AcyI | GRCGYC | 1 cut(s) | 1765 |
| AfaI | GTAC | 3 cut(s) | 132, 793, 1389 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1706, 1761 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1598, 1746, 1764 |
| AjiI | CACGTC | 1 cut(s) | 1162 |
| AjnI | CCWGG | 4 cut(s) | 334, 640, 786, 1771 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1055, 1087 |
| AleI | CACNNNNGTG | 1 cut(s) | 26 |
| AluBI | AGCT | 8 cut(s) | 150, 170, 449, 851, 910, 1258, 1291, 1686 |
| AluI | AGCT | 8 cut(s) | 150, 170, 449, 851, 910, 1258, 1291, 1686 |
| Alw21I | GWGCWC | 3 cut(s) | 293, 1293, 1526 |
| Alw26I | GTCTC | 2 cut(s) | 26, 1640 |
| AlwI | GGATC | 1 cut(s) | 481 |
| Ama87I | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| AoxI | GGCC | 2 cut(s) | 970, 1272 |
| ApaI | GGGCCC | 1 cut(s) | 1276 |
| ApeKI | GCWGC | 7 cut(s) | 566, 806, 1258, 1434, 1568, 1571, 1574 |
| ApoI | RAATTY | 5 cut(s) | 182, 1042, 1118, 1407, 1466 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1044, 1082 |
| AspLEI | GCGC | 3 cut(s) | 1564, 1727, 1818 |
| AspS9I | GGNCC | 4 cut(s) | 970, 1272, 1273, 1792 |
| AsuC2I | CCSGG | 1 cut(s) | 1701 |
| AsuHPI | GGTGA | 3 cut(s) | 383, 1087, 1715 |
| AvaI | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| AvaII | GGWCC | 1 cut(s) | 1792 |
| BaeGI | GKGCMC | 1 cut(s) | 1276 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1157, 1190 |
| BanI | GGYRCC | 1 cut(s) | 1845 |
| BanII | GRGCYC | 3 cut(s) | 1276, 1293, 1701 |
| Bbv12I | GWGCWC | 3 cut(s) | 293, 1293, 1526 |
| BbvI | GCAGC | 7 cut(s) | 578, 793, 1245, 1421, 1555, 1558, 1561 |
| BccI | CCATC | 2 cut(s) | 1138, 1303 |
| BceAI | ACGGC | 1 cut(s) | 968 |
| BciT130I | CCWGG | 4 cut(s) | 336, 642, 788, 1773 |
| BclI | TGATCA | 1 cut(s) | 505 |
| BcnI | CCSGG | 1 cut(s) | 1701 |
| BcoDI | GTCTC | 2 cut(s) | 26, 1640 |
| BfaI | CTAG | 5 cut(s) | 122, 435, 939, 1385, 1761 |
| BfmI | CTRYAG | 2 cut(s) | 1110, 1203 |
| BfoI | RGCGCY | 2 cut(s) | 1728, 1819 |
| BglII | AGATCT | 1 cut(s) | 1149 |
| BisI | GCNGC | 8 cut(s) | 567, 692, 807, 1259, 1435, 1569, 1572, 1575 |
| BlpI | GCTNAGC | 1 cut(s) | 1614 |
| BlsI | GCNGC | 8 cut(s) | 568, 693, 808, 1260, 1436, 1570, 1573, 1576 |
| Bme1390I | CCNGG | 5 cut(s) | 336, 642, 788, 1701, 1773 |
| Bme18I | GGWCC | 1 cut(s) | 1792 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1598, 1746, 1764 |
| BmeT110I | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| BmgBI | CACGTC | 1 cut(s) | 1162 |
| BmgT120I | GGNCC | 4 cut(s) | 970, 1272, 1273, 1792 |
| BmiI | GGNNCC | 2 cut(s) | 1274, 1847 |
| BmrFI | CCNGG | 5 cut(s) | 336, 642, 788, 1701, 1773 |
| BmsI | GCATC | 7 cut(s) | 425, 722, 808, 817, 818, 1343, 1417 |
| BpmI | CTGGAG | 1 cut(s) | 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1614 |
| BpuMI | CCSGG | 1 cut(s) | 1701 |
| Bsa29I | ATCGAT | 1 cut(s) | 1379 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1148 |
| BsaHI | GRCGYC | 1 cut(s) | 1765 |
| BsaI | GGTCTC | 1 cut(s) | 1640 |
| BsaJI | CCNNGG | 8 cut(s) | 27, 308, 787, 984, 1169, 1243, 1728, 1771 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1706, 1761 |
| Bse118I | RCCGGY | 1 cut(s) | 273 |
| Bse1I | ACTGG | 1 cut(s) | 846 |
| Bse3DI | GCAATG | 3 cut(s) | 228, 240, 648 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1148 |
| BseBI | CCWGG | 4 cut(s) | 336, 642, 788, 1773 |
| BseCI | ATCGAT | 1 cut(s) | 1379 |
| BseDI | CCNNGG | 8 cut(s) | 27, 308, 787, 984, 1169, 1243, 1728, 1771 |
| BseGI | GGATG | 4 cut(s) | 61, 226, 888, 1666 |
| BseJI | GATNNNNATC | 1 cut(s) | 1148 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1706, 1761 |
| BseMI | GCAATG | 3 cut(s) | 228, 240, 648 |
| BseMII | CTCAG | 2 cut(s) | 1389, 1605 |
| BseNI | ACTGG | 1 cut(s) | 846 |
| BseRI | GAGGAG | 1 cut(s) | 1179 |
| BseSI | GKGCMC | 1 cut(s) | 1276 |
| BseXI | GCAGC | 7 cut(s) | 578, 793, 1245, 1421, 1555, 1558, 1561 |
| BsgI | GTGCAG | 2 cut(s) | 28, 1560 |
| BshFI | GGCC | 2 cut(s) | 972, 1274 |
| BshNI | GGYRCC | 1 cut(s) | 1845 |
| BshVI | ATCGAT | 1 cut(s) | 1379 |
| BsiHKAI | GWGCWC | 3 cut(s) | 293, 1293, 1526 |
| BsiHKCI | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| BsiSI | CCGG | 2 cut(s) | 274, 1701 |
| BslFI | GGGAC | 2 cut(s) | 1586, 1752 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1706, 1761 |
| BsmAI | GTCTC | 2 cut(s) | 26, 1640 |
| BsmFI | GGGAC | 2 cut(s) | 1586, 1752 |
| BsmI | GAATGC | 2 cut(s) | 1096, 1286 |
| BsnI | GGCC | 2 cut(s) | 972, 1274 |
| Bso31I | GGTCTC | 1 cut(s) | 1640 |
| BsoBI | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| Bsp120I | GGGCCC | 1 cut(s) | 1272 |
| Bsp1286I | GDGCHC | 5 cut(s) | 293, 1276, 1293, 1526, 1701 |
| Bsp143I | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1614 |
| Bsp19I | CCATGG | 2 cut(s) | 308, 1169 |
| BspACI | CCGC | 2 cut(s) | 394, 691 |
| BspANI | GGCC | 2 cut(s) | 972, 1274 |
| BspCNI | CTCAG | 2 cut(s) | 1390, 1606 |
| BspDI | ATCGAT | 1 cut(s) | 1379 |
| BspLI | GGNNCC | 2 cut(s) | 1274, 1847 |
| BspMAI | CTGCAG | 1 cut(s) | 1114 |
| BspPI | GGATC | 1 cut(s) | 481 |
| BspQI | GCTCTTC | 1 cut(s) | 202 |
| BspT107I | GGYRCC | 1 cut(s) | 1845 |
| BspTNI | GGTCTC | 1 cut(s) | 1640 |
| BsrDI | GCAATG | 3 cut(s) | 228, 240, 648 |
| BsrFI | RCCGGY | 1 cut(s) | 273 |
| BsrI | ACTGG | 1 cut(s) | 846 |
| BssAI | RCCGGY | 1 cut(s) | 273 |
| BssECI | CCNNGG | 8 cut(s) | 27, 308, 787, 984, 1169, 1243, 1728, 1771 |
| BssMI | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| BssNI | GRCGYC | 1 cut(s) | 1765 |
| BssT1I | CCWWGG | 3 cut(s) | 308, 1169, 1728 |
| Bst2UI | CCWGG | 4 cut(s) | 336, 642, 788, 1773 |
| Bst4CI | ACNGT | 3 cut(s) | 617, 710, 1630 |
| Bst6I | CTCTTC | 1 cut(s) | 202 |
| BstACI | GRCGYC | 1 cut(s) | 1765 |
| BstC8I | GCNNGC | 4 cut(s) | 414, 537, 1432, 1566 |
| BstDEI | CTNAG | 3 cut(s) | 146, 1398, 1614 |
| BstDSI | CCRYGG | 4 cut(s) | 27, 308, 984, 1169 |
| BstF5I | GGATG | 4 cut(s) | 61, 226, 888, 1666 |
| BstH2I | RGCGCY | 2 cut(s) | 1728, 1819 |
| BstHHI | GCGC | 3 cut(s) | 1564, 1727, 1818 |
| BstKTI | GATC | 7 cut(s) | 115, 247, 268, 489, 508, 1152, 1351 |
| BstMAI | GTCTC | 2 cut(s) | 26, 1640 |
| BstMBI | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 92, 373, 541, 827, 1100, 1109, 1231, 1568, 1574 |
| BstNI | CCWGG | 4 cut(s) | 336, 642, 788, 1773 |
| BstNSI | RCATGY | 4 cut(s) | 535, 737, 937, 1568 |
| BstSCI | CCNGG | 5 cut(s) | 334, 640, 786, 1699, 1771 |
| BstSFI | CTRYAG | 2 cut(s) | 1110, 1203 |
| BstSLI | GKGCMC | 1 cut(s) | 1276 |
| BstV1I | GCAGC | 7 cut(s) | 578, 793, 1245, 1421, 1555, 1558, 1561 |
| BstX2I | RGATCY | 2 cut(s) | 486, 1149 |
| BstYI | RGATCY | 2 cut(s) | 486, 1149 |
| Bsu15I | ATCGAT | 1 cut(s) | 1379 |
| BsuRI | GGCC | 2 cut(s) | 972, 1274 |
| BsuTUI | ATCGAT | 1 cut(s) | 1379 |
| BtgI | CCRYGG | 4 cut(s) | 27, 308, 984, 1169 |
| BtrI | CACGTC | 1 cut(s) | 1162 |
| BtsCI | GGATG | 4 cut(s) | 61, 226, 888, 1666 |
| BtsI | GCAGTG | 2 cut(s) | 16, 1107 |
| BtsIMutI | CAGTG | 4 cut(s) | 16, 839, 924, 1107 |
| Cac8I | GCNNGC | 4 cut(s) | 414, 537, 1432, 1566 |
| CfoI | GCGC | 3 cut(s) | 1564, 1727, 1818 |
| Cfr10I | RCCGGY | 1 cut(s) | 273 |
| Cfr13I | GGNCC | 4 cut(s) | 970, 1272, 1273, 1792 |
| ClaI | ATCGAT | 1 cut(s) | 1379 |
| CseI | GACGC | 2 cut(s) | 38, 1754 |
| Csp6I | GTAC | 3 cut(s) | 131, 792, 1388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1482, 1517 |
| CviQI | GTAC | 3 cut(s) | 131, 792, 1388 |
| DdeI | CTNAG | 3 cut(s) | 146, 1398, 1614 |
| DpnI | GATC | 7 cut(s) | 114, 246, 267, 488, 507, 1151, 1350 |
| DpnII | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1598, 1746, 1764 |
| Eam1104I | CTCTTC | 1 cut(s) | 202 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1598, 1746, 1764 |
| EarI | CTCTTC | 1 cut(s) | 202 |
| EciI | GGCGGA | 1 cut(s) | 383 |
| Ecl136II | GAGCTC | 1 cut(s) | 1291 |
| Eco130I | CCWWGG | 3 cut(s) | 308, 1169, 1728 |
| Eco24I | GRGCYC | 3 cut(s) | 1276, 1293, 1701 |
| Eco31I | GGTCTC | 1 cut(s) | 1640 |
| Eco32I | GATATC | 2 cut(s) | 499, 596 |
| Eco47I | GGWCC | 1 cut(s) | 1792 |
| Eco53kI | GAGCTC | 1 cut(s) | 1291 |
| Eco57I | CTGAAG | 1 cut(s) | 639 |
| Eco88I | CYCGRG | 3 cut(s) | 450, 1244, 1515 |
| EcoICRI | GAGCTC | 1 cut(s) | 1291 |
| EcoO109I | RGGNCCY | 3 cut(s) | 970, 1273, 1792 |
| EcoRII | CCWGG | 4 cut(s) | 334, 640, 786, 1771 |
| EcoRV | GATATC | 2 cut(s) | 499, 596 |
| EcoT14I | CCWWGG | 3 cut(s) | 308, 1169, 1728 |
| EcoT22I | ATGCAT | 3 cut(s) | 166, 240, 832 |
| EcoT38I | GRGCYC | 3 cut(s) | 1276, 1293, 1701 |
| ErhI | CCWWGG | 3 cut(s) | 308, 1169, 1728 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 637, 669, 756, 788 |
| FaqI | GGGAC | 2 cut(s) | 1586, 1752 |
| FauNDI | CATATG | 1 cut(s) | 1851 |
| FbaI | TGATCA | 1 cut(s) | 505 |
| FblI | GTMKAC | 1 cut(s) | 742 |
| Fnu4HI | GCNGC | 8 cut(s) | 567, 692, 807, 1259, 1435, 1569, 1572, 1575 |
| FokI | GGATG | 4 cut(s) | 68, 233, 895, 1653 |
| FriOI | GRGCYC | 3 cut(s) | 1276, 1293, 1701 |
| Fsp4HI | GCNGC | 8 cut(s) | 567, 692, 807, 1259, 1435, 1569, 1572, 1575 |
| FspAI | RTGCGCAY | 1 cut(s) | 1563 |
| FspBI | CTAG | 5 cut(s) | 122, 435, 939, 1385, 1761 |
| FspI | TGCGCA | 1 cut(s) | 1563 |
| GlaI | GCGC | 3 cut(s) | 1563, 1726, 1817 |
| GluI | GCNGC | 8 cut(s) | 567, 692, 807, 1259, 1435, 1569, 1572, 1575 |
| GsuI | CTGGAG | 1 cut(s) | 357 |
| HaeII | RGCGCY | 2 cut(s) | 1728, 1819 |
| HaeIII | GGCC | 2 cut(s) | 972, 1274 |
| HapII | CCGG | 2 cut(s) | 274, 1701 |
| HgaI | GACGC | 2 cut(s) | 38, 1754 |
| HhaI | GCGC | 3 cut(s) | 1564, 1727, 1818 |
| Hin1I | GRCGYC | 1 cut(s) | 1765 |
| Hin6I | GCGC | 3 cut(s) | 1562, 1725, 1816 |
| HinP1I | GCGC | 3 cut(s) | 1562, 1725, 1816 |
| HincII | GTYRAC | 1 cut(s) | 1374 |
| HindII | GTYRAC | 1 cut(s) | 1374 |
| HindIII | AAGCTT | 2 cut(s) | 148, 908 |
| HinfI | GANTC | 6 cut(s) | 68, 140, 390, 1381, 1663, 1744 |
| HpaII | CCGG | 2 cut(s) | 274, 1701 |
| HphI | GGTGA | 3 cut(s) | 383, 1087, 1715 |
| Hpy166II | GTNNAC | 7 cut(s) | 16, 743, 922, 1374, 1553, 1592, 1751 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 898, 958 |
| Hpy188III | TCNNGA | 8 cut(s) | 53, 188, 458, 584, 669, 1049, 1087, 1676 |
| Hpy8I | GTNNAC | 7 cut(s) | 16, 743, 922, 1374, 1553, 1592, 1751 |
| Hpy99I | CGWCG | 1 cut(s) | 1536 |
| HpyCH4III | ACNGT | 3 cut(s) | 617, 710, 1630 |
| HpyCH4IV | ACGT | 1 cut(s) | 1161 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 92, 373, 541, 827, 1100, 1109, 1231, 1568, 1574 |
| HpyF3I | CTNAG | 3 cut(s) | 146, 1398, 1614 |
| HpySE526I | ACGT | 1 cut(s) | 1161 |
| Hsp92I | GRCGYC | 1 cut(s) | 1765 |
| HspAI | GCGC | 3 cut(s) | 1562, 1725, 1816 |
| Ksp22I | TGATCA | 1 cut(s) | 505 |
| Kzo9I | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| LguI | GCTCTTC | 1 cut(s) | 202 |
| LmnI | GCTCC | 5 cut(s) | 296, 553, 1296, 1312, 1722 |
| Lsp1109I | GCAGC | 7 cut(s) | 578, 793, 1245, 1421, 1555, 1558, 1561 |
| LweI | GCATC | 7 cut(s) | 425, 722, 808, 817, 818, 1343, 1417 |
| MaeI | CTAG | 5 cut(s) | 122, 435, 939, 1385, 1761 |
| MaeII | ACGT | 1 cut(s) | 1161 |
| MaeIII | GTNAC | 3 cut(s) | 869, 1249, 1637 |
| MalI | GATC | 7 cut(s) | 114, 246, 267, 488, 507, 1151, 1350 |
| MboI | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| MboII | GAAGA | 6 cut(s) | 122, 219, 239, 596, 599, 1075 |
| MfeI | CAATTG | 1 cut(s) | 1419 |
| MflI | RGATCY | 2 cut(s) | 486, 1149 |
| MhlI | GDGCHC | 5 cut(s) | 293, 1276, 1293, 1526, 1701 |
| MlyI | GAGTC | 1 cut(s) | 399 |
| MnlI | CCTC | 8 cut(s) | 52, 676, 1197, 1200, 1253, 1362, 1408, 1708 |
| Mph1103I | ATGCAT | 3 cut(s) | 166, 240, 832 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1044, 1082 |
| MseI | TTAA | 4 cut(s) | 42, 774, 1059, 1344 |
| MslI | CAYNNNNRTG | 4 cut(s) | 26, 233, 381, 1545 |
| MspA1I | CMGCKG | 1 cut(s) | 691 |
| MspI | CCGG | 2 cut(s) | 274, 1701 |
| MspR9I | CCNGG | 5 cut(s) | 336, 642, 788, 1701, 1773 |
| MunI | CAATTG | 1 cut(s) | 1419 |
| Mva1269I | GAATGC | 2 cut(s) | 1096, 1286 |
| MvaI | CCWGG | 4 cut(s) | 336, 642, 788, 1773 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 92, 373, 541, 827, 1100, 1109, 1231, 1568, 1574 |
| NciI | CCSGG | 1 cut(s) | 1701 |
| NcoI | CCATGG | 2 cut(s) | 308, 1169 |
| NdeI | CATATG | 1 cut(s) | 1851 |
| NdeII | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| NlaIV | GGNNCC | 2 cut(s) | 1274, 1847 |
| NmuCI | GTSAC | 1 cut(s) | 869 |
| NsbI | TGCGCA | 1 cut(s) | 1563 |
| NsiI | ATGCAT | 3 cut(s) | 166, 240, 832 |
| NspI | RCATGY | 4 cut(s) | 535, 737, 937, 1568 |
| OliI | CACNNNNGTG | 1 cut(s) | 26 |
| PaeI | GCATGC | 1 cut(s) | 1568 |
| PaeR7I | CTCGAG | 2 cut(s) | 450, 1515 |
| PciSI | GCTCTTC | 1 cut(s) | 202 |
| PctI | GAATGC | 2 cut(s) | 1096, 1286 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1044, 1082 |
| PfeI | GAWTC | 5 cut(s) | 68, 140, 1381, 1663, 1744 |
| PfoI | TCCNGGA | 2 cut(s) | 334, 640 |
| PkrI | GCNGC | 8 cut(s) | 568, 693, 808, 1260, 1436, 1570, 1573, 1576 |
| PleI | GAGTC | 1 cut(s) | 398 |
| PpsI | GAGTC | 1 cut(s) | 398 |
| PpuMI | RGGWCCY | 1 cut(s) | 1792 |
| Psp124BI | GAGCTC | 1 cut(s) | 1293 |
| Psp5II | RGGWCCY | 1 cut(s) | 1792 |
| Psp6I | CCWGG | 4 cut(s) | 334, 640, 786, 1771 |
| PspGI | CCWGG | 4 cut(s) | 334, 640, 786, 1771 |
| PspN4I | GGNNCC | 2 cut(s) | 1274, 1847 |
| PspOMI | GGGCCC | 1 cut(s) | 1272 |
| PspPI | GGNCC | 4 cut(s) | 970, 1272, 1273, 1792 |
| PspPPI | RGGWCCY | 1 cut(s) | 1792 |
| PspXI | VCTCGAGB | 2 cut(s) | 450, 1515 |
| PstI | CTGCAG | 1 cut(s) | 1114 |
| PsuI | RGATCY | 2 cut(s) | 486, 1149 |
| RsaI | GTAC | 3 cut(s) | 132, 793, 1389 |
| RsaNI | GTAC | 3 cut(s) | 131, 792, 1388 |
| RseI | CAYNNNNRTG | 4 cut(s) | 26, 233, 381, 1545 |
| SacI | GAGCTC | 1 cut(s) | 1293 |
| SapI | GCTCTTC | 1 cut(s) | 202 |
| SaqAI | TTAA | 4 cut(s) | 42, 774, 1059, 1344 |
| SatI | GCNGC | 8 cut(s) | 567, 692, 807, 1259, 1435, 1569, 1572, 1575 |
| Sau3AI | GATC | 7 cut(s) | 112, 244, 265, 486, 505, 1149, 1348 |
| Sau96I | GGNCC | 4 cut(s) | 970, 1272, 1273, 1792 |
| SchI | GAGTC | 1 cut(s) | 399 |
| ScrFI | CCNGG | 5 cut(s) | 336, 642, 788, 1701, 1773 |
| SduI | GDGCHC | 5 cut(s) | 293, 1276, 1293, 1526, 1701 |
| SfaNI | GCATC | 7 cut(s) | 425, 722, 808, 817, 818, 1343, 1417 |
| SfcI | CTRYAG | 2 cut(s) | 1110, 1203 |
| Sfr274I | CTCGAG | 2 cut(s) | 450, 1515 |
| SinI | GGWCC | 1 cut(s) | 1792 |
| SlaI | CTCGAG | 2 cut(s) | 450, 1515 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 26, 233, 381, 1545 |
| SmlI | CTYRAG | 2 cut(s) | 450, 1515 |
| SmoI | CTYRAG | 2 cut(s) | 450, 1515 |
| SphI | GCATGC | 1 cut(s) | 1568 |
| SsiI | CCGC | 2 cut(s) | 394, 691 |
| SspMI | CTAG | 5 cut(s) | 122, 435, 939, 1385, 1761 |
| SstI | GAGCTC | 1 cut(s) | 1293 |
| StyD4I | CCNGG | 5 cut(s) | 334, 640, 786, 1699, 1771 |
| StyI | CCWWGG | 3 cut(s) | 308, 1169, 1728 |
| TaaI | ACNGT | 3 cut(s) | 617, 710, 1630 |
| TaiI | ACGT | 1 cut(s) | 1164 |
| TaqI | TCGA | 4 cut(s) | 268, 451, 1379, 1516 |
| TaqII | GACCGA | 1 cut(s) | 1795 |
| TauI | GCSGC | 1 cut(s) | 694 |
| TfiI | GAWTC | 5 cut(s) | 68, 140, 1381, 1663, 1744 |
| Tru1I | TTAA | 4 cut(s) | 42, 774, 1059, 1344 |
| Tru9I | TTAA | 4 cut(s) | 42, 774, 1059, 1344 |
| TscAI | CASTG | 4 cut(s) | 16, 846, 931, 1114 |
| TseFI | GTSAC | 1 cut(s) | 869 |
| TseI | GCWGC | 7 cut(s) | 566, 806, 1258, 1434, 1568, 1571, 1574 |
| Tsp45I | GTSAC | 1 cut(s) | 869 |
| TspDTI | ATGAA | 6 cut(s) | 94, 392, 563, 1001, 1473, 1655 |
| TspGWI | ACGGA | 2 cut(s) | 491, 1504 |
| TspRI | CASTG | 4 cut(s) | 16, 846, 931, 1114 |
| VpaK11BI | GGWCC | 1 cut(s) | 1792 |
| XapI | RAATTY | 5 cut(s) | 182, 1042, 1118, 1407, 1466 |
| XceI | RCATGY | 4 cut(s) | 535, 737, 937, 1568 |
| XhoI | CTCGAG | 2 cut(s) | 450, 1515 |
| XmiI | GTMKAC | 1 cut(s) | 742 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1044, 1082 |
| XspI | CTAG | 5 cut(s) | 122, 435, 939, 1385, 1761 |
| Zsp2I | ATGCAT | 3 cut(s) | 166, 240, 832 |