Rorug02G0614300

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000251
Physical Location & Seq
Reverse (-)
73206869 .. 73207942
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0614300.1

Sequence Viewer

Length: 297 bp
ATGGTGAAGGTTTACTTTCTTATTTCACTAGGGCAGACTGACAAGACGGTGAAGGTGGTGAGGGAAGGTGGAAAGGTGGTCACAATAGTAGGTCCAGTAATGCCTCCGGCGTTCAGATTTGTGCTCACCCCTACAGGGTCTATCTTGGAGAAACTGAAGCCGTACTCGGGGAGCAGGAAGGTGAAGCCAGTGCTTGATCCCACAGGTCCATATCACTTTTATAAAGTTGTTGAAGCACTTGGTTACCTTGAGACTTCAAGAGCTACAGGAAAGGTTGTTGTGTACCCCATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

98

Amino Acids

10.75

Weight (kDa)

9.89

Isoelectric Point (pI)

14.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 12 - 94 1.8e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AclWI GGATC 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 164, 284
AfiI CCNNNNNNNGG 2 cut(s) 135, 167
AgsI TTSAA 2 cut(s) 233, 258
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 92, 206
AsuHPI GGTGA 5 cut(s) 16, 61, 70, 118, 193
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 92, 206
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 132, 264
Bme18I GGWCC 2 cut(s) 92, 206
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 92, 206
BpuEI CTTGAG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 167
Bse1I ACTGG 2 cut(s) 95, 188
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 2 cut(s) 135, 167
BseNI ACTGG 2 cut(s) 95, 188
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 135, 167
BsmAI GTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 196
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 2 cut(s) 95, 188
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 49
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 196
BstPI GGTNACC 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 132, 264
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 92, 206
Csp6I GTAC 2 cut(s) 163, 283
CviAII CATG 1 cut(s) 294
CviJI RGCY 3 cut(s) 160, 187, 263
CviKI_1 RGCY 3 cut(s) 160, 187, 263
CviQI GTAC 2 cut(s) 163, 283
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 92, 206
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 166
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
FaeI CATG 1 cut(s) 297
FaiI YATR 3 cut(s) 211, 222, 295
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 293
FokI GGATG 1 cut(s) 275
FspBI CTAG 1 cut(s) 29
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 297
HpaII CCGG 1 cut(s) 107
HphI GGTGA 5 cut(s) 16, 61, 70, 118, 193
Hpy166II GTNNAC 2 cut(s) 13, 283
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 13, 283
HpyAV CCTTC 3 cut(s) 46, 59, 172
HpyCH4III ACNGT 1 cut(s) 49
Hsp92II CATG 1 cut(s) 297
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 7 cut(s) 108, 120, 120, 160, 189, 201, 252
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 79, 242
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 126
MnlI CCTC 2 cut(s) 54, 114
MspI CCGG 1 cut(s) 107
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 92, 206
RsaI GTAC 2 cut(s) 164, 284
RsaNI GTAC 2 cut(s) 163, 283
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 92, 206
SduI GDGCHC 1 cut(s) 126
SfcI CTRYAG 2 cut(s) 132, 264
SinI GGWCC 2 cut(s) 92, 206
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 49
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 92, 206
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.