Rh6AG037700

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000251
Physical Location & Seq
Forward (+)
5095952 .. 5096299
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG037700.1

Sequence Viewer

Length: 348 bp
ATGTTGATCATTACTTCGAGTTTGAACACGAAGAAGAAGAAGGGTGGTTGTGATTGTTTTGGTTTGGTTTTTCAGGTTTGCCGCATGCAGGAAGAGACATTTTTTGTTGGTCAAGAGTTCCCTGATGTTAAGGCGTTTAGGAATGCTATTAAAGAAGCAATAATTTCCCAACACTTTGAGCTTCGTATAATAAAAAGTGACCTTATCCGCTACTTTGTAAAGTGTGCCGCGGAGGCTTGTCCTTGGCGCATTCGTGTTGTGAAGCTTCCTAATGCGCCGACATTTGCGATAAGAAGCCTTGAAGGGAAGCACACTTGCTGTAGAAATGCGCACAATGGCGTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

115

Amino Acids

13.14

Weight (kDa)

9.34

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 34 - 97 5.8e-22 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 330
AccII CGCG 1 cut(s) 230
AciI CCGC 4 cut(s) 82, 208, 228, 230
AcyI GRCGYC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 25, 302
AluBI AGCT 2 cut(s) 181, 265
AluI AGCT 2 cut(s) 181, 265
Alw26I GTCTC 1 cut(s) 89
AspLEI GCGC 3 cut(s) 249, 277, 331
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 233
BisI GCNGC 2 cut(s) 82, 228
BlsI GCNGC 2 cut(s) 83, 229
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 228, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 228, 242
BseLI CCNNNNNNNGG 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 2 cut(s) 148, 249
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 4 cut(s) 82, 208, 228, 230
BspFNI CGCG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 228, 242
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 230
BstHHI GCGC 3 cut(s) 249, 277, 331
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 319
BstUI CGCG 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 3 cut(s) 249, 277, 331
Cfr42I CCGCGG 1 cut(s) 231
CseI GACGC 1 cut(s) 328
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 181, 236, 265, 297
CviKI_1 RGCY 4 cut(s) 181, 236, 265, 297
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 188
FatI CATG 1 cut(s) 84
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 82, 228
Fsp4HI GCNGC 2 cut(s) 82, 228
FspAI RTGCGCAY 1 cut(s) 330
FspI TGCGCA 1 cut(s) 330
GlaI GCGC 3 cut(s) 248, 276, 330
GluI GCNGC 2 cut(s) 82, 228
HgaI GACGC 1 cut(s) 328
HhaI GCGC 3 cut(s) 249, 277, 331
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 3 cut(s) 247, 275, 329
HinP1I GCGC 3 cut(s) 247, 275, 329
HindIII AAGCTT 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 34, 296
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 3 cut(s) 247, 275, 329
Ksp22I TGATCA 1 cut(s) 6
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 59, 74, 135
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 43, 46, 49, 104
MluCI AATT 1 cut(s) 162
MnlI CCTC 1 cut(s) 226
MseI TTAA 2 cut(s) 129, 150
MspA1I CMGCKG 1 cut(s) 230
Mva1269I GAATGC 2 cut(s) 148, 249
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 197
NsbI TGCGCA 1 cut(s) 330
NspI RCATGY 1 cut(s) 88
PaeI GCATGC 1 cut(s) 88
PctI GAATGC 2 cut(s) 148, 249
PkrI GCNGC 2 cut(s) 83, 229
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 129, 150
SatI GCNGC 2 cut(s) 82, 228
Sau3AI GATC 1 cut(s) 6
SetI ASST 4 cut(s) 78, 183, 204, 267
SfcI CTRYAG 1 cut(s) 319
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SphI GCATGC 1 cut(s) 88
Sse9I AATT 1 cut(s) 162
SsiI CCGC 4 cut(s) 82, 208, 228, 230
StyI CCWWGG 1 cut(s) 242
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 162
TauI GCSGC 2 cut(s) 84, 230
Tru1I TTAA 2 cut(s) 129, 150
Tru9I TTAA 2 cut(s) 129, 150
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
XceI RCATGY 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.