Rroxscaffold_2G00153730

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000251
Physical Location & Seq
Forward (+)
90477102 .. 90479703
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153730.1

Sequence Viewer

Length: 2115 bp
ATGATGACAATGCCCTCTATGCTGAAGCACATTGACTGGGCATGTGGGATAAATCTGGCTGACTCTGTGACTCCCATTGCTGCCTCCAGTACTTCAGCTGTTGTTTTTCACGCTGATGCTAATCATTCTGTTGCAGTTAATTCACCAATTGCACCAAGTGATGTTAATACTGCAGTTGTTCCTACTGCTTCAAATAATACTCCAGATGTCCCTTCCTCTGTTCTTGCTCCACAACAAGCAGGCTCTATTATATCTGCCAAAAAAGGGACTCAAAGCGCAAGTGGAGTGGCTCACACCTCAAACACTTTTCCTGCCTTCACTGATCATGCAGATGCTATTACTTCAAACCCGACCGGTTCCATTTCTCTTGCTGCTGATGCAAGTGTCCACAGCTTGGACATAAATGATATGGACTCTACCCCTGCTGGTGTTATTAGTTCCAGTCCAAACGGTTCCATTTCTGTTGCTGCTGATGCAAGTGTCCACAGCTTGGACATAATTGATATGGACTGCACCCCTGCTGATACAGTTAAGAAACGAAGGCGCACTGCTGCATGGAAAATTGGTCCAGATGGCCCTACCATTGTTTCTGTCAAAGATGATATTGGGGATAAGGGAAAACCTACGTCTCGGAAGAAGAATACTGTTGACTATAAAACTGCTCCAGAAACTGATAACGAGGATCAGCAAGAAGAGATTGTGCTGTGTAAAGATAGTAATAGCATTGACACTATTCAGGCTATTCTAGGCCCGTCAAATGATGTTCCATCTGAAGAGTTGGTCACATTGTGGAAAGATGGTATCACTGGGGTTGGACAGGAGTTCACAAGTGTTCATGAATTTCGCGATGTACTGCAAAAATATGCCATTGCTCATCGTTTTATGTATAGGTTAAAAAAGAATGATACTAACCGTGCAAGTTGCATATGTATTGCTGAAGCCTGTTCTTGGAGAATTCAAGCATCCTGGGACTCATCTATGGAAAAGTTTGTGATAAAGAAGATGGAGAAAAGGCATACATGTGAAGGGGAGTCCTGGAAATTTTATCATCCAAAAAAGAATTGGTTGGTTAGTATCATTAAAGACAGATTAACAGACAACCCACATCTGAAGCCGAAAGAAATTGTCAATAGCATTCTTCGGGATTTTGGAATTACAGTGAACTATACTCAAGTACGGCGTGGAATTGAAGATGCAAAGGAACAACTTATGGGTTCTTATAAAGAAGCTTATAACCAGTTACCATGGTTTTGTAAGAAAATGGCAGAGGCAAATCCTGGTAGTAATATTAGGCTTTTCACTGGTGAGGATGGGAGATTTCAGCGTCTCTTTGAATGCTTTCATGCGTCAATACATGGCTTTCAGAATGGTTGCCGACCTATTATTTTTCTTGATTCTATGTCCTTAAAATCAAAATACCATGAGACATTTTTCGCAGCTACTGCTTTGGATGGAGATGATGGTGCTTTCCCGGTTGCATTTGCCATAGTAGACACTGAGAATGACGATAACTGGCATTGGTTTTTGGATCAATTAAGATCAGCTGTTTCAACCACACAGTCCTTAACTATTGTCTTTGATAGAGAGAAAGGACTGGAGAAATTAGTGACCGAGGTATTTGAGAATGCCCACCATGGCTACTCTATGCACCACCTTCTGAGAAGCTTCAAGAAAAACTTGAGGCCCCCATTTCATGGAGATGGAAAGGGTTCTTTGCTAAGTTGTTTCGTGGCTGCTGCCCAGTCACTCCGACTTGATGGTTTTAAGTATTTTACAGATCAAATTAAACAGGTTTCATCACATGCTTATGACTGGGTCCTCCAAATTGAACAAGAATGTTGGACAAATGTATTTTTCAAAGGTGAGCACTACAACCATATCACTGTCGATGTTGCAGAGACGTACACCAACTGGATAGAGGAAATGCGAGCATTGCCCATAATACGGAAGATAGAAGTGTTAAGCTCTAAGCTGATGGAATTGATAAATACTCGTCAAACTGATTCATGCACTTGGTCTACAGAACTTACTCCATCTAAGGAAGAAAAGCTGCAAGAAAAAATGTTAGAAGCAGATCGCCTTAAAGTGTTATTTTCAACTGATACTCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

704

Amino Acids

78.47

Weight (kDa)

5.8

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 268 - 332 8.4e-18 MuDR family transposase
MULE PF10551 462 - 553 4.3e-15 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1221, 1233
AccB7I CCANNNNNTGG 3 cut(s) 394, 490, 1694
AccI GTMKAC 2 cut(s) 1491, 2018
AccII CGCG 1 cut(s) 846
AclWI GGATC 2 cut(s) 690, 1536
AcsI RAATTY 3 cut(s) 839, 954, 1040
AcuI CTGAAG 5 cut(s) 44, 78, 792, 957, 1130
AdeI CACNNNGTG 2 cut(s) 158, 789
AfaI GTAC 4 cut(s) 91, 852, 1176, 1904
AfiI CCNNNNNNNGG 6 cut(s) 264, 394, 490, 948, 1694, 1944
AflIII ACRYGT 1 cut(s) 1019
AgeI ACCGGT 1 cut(s) 353
AjnI CCWGG 3 cut(s) 965, 1034, 1276
Alw21I GWGCWC 1 cut(s) 1869
Alw26I GTCTC 4 cut(s) 633, 1331, 1418, 1892
AlwI GGATC 2 cut(s) 690, 1536
AlwNI CAGNNNCTG 2 cut(s) 671, 1442
AoxI GGCC 3 cut(s) 574, 748, 1682
ApeKI GCWGC 8 cut(s) 80, 371, 467, 551, 1436, 1733, 1736, 2050
ApoI RAATTY 3 cut(s) 839, 954, 1040
AsiGI ACCGGT 1 cut(s) 353
Asp700I GAANNNNTTC 2 cut(s) 1338, 1708
AspLEI GCGC 2 cut(s) 278, 546
AspS9I GGNCC 5 cut(s) 566, 575, 749, 1683, 1816
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 3 cut(s) 135, 1316, 1874
AvaII GGWCC 2 cut(s) 566, 1816
Bbv12I GWGCWC 1 cut(s) 1869
BbvI GCAGC 8 cut(s) 67, 358, 454, 538, 1448, 1720, 1723, 2037
BceAI ACGGC 1 cut(s) 1193
BciT130I CCWGG 3 cut(s) 967, 1036, 1278
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 1472
BcoDI GTCTC 4 cut(s) 633, 1331, 1418, 1892
BfaI CTAG 1 cut(s) 746
BfmI CTRYAG 2 cut(s) 171, 2019
BisI GCNGC 8 cut(s) 81, 372, 468, 552, 1437, 1734, 1737, 2051
BlsI GCNGC 8 cut(s) 82, 373, 469, 553, 1438, 1735, 1738, 2052
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 4 cut(s) 967, 1036, 1278, 1472
Bme18I GGWCC 2 cut(s) 566, 1816
BmgT120I GGNCC 5 cut(s) 566, 575, 749, 1683, 1816
BmiI GGNNCC 4 cut(s) 358, 454, 1685, 1817
BmrFI CCNGG 4 cut(s) 967, 1036, 1278, 1472
BmrI ACTGGG 4 cut(s) 46, 816, 1735, 1822
BmsI GCATC 6 cut(s) 106, 322, 367, 463, 971, 1183
BmuI ACTGGG 4 cut(s) 46, 816, 1735, 1822
BpmI CTGGAG 4 cut(s) 70, 186, 648, 1616
BpuEI CTTGAG 2 cut(s) 1155, 1699
BpuMI CCSGG 1 cut(s) 1472
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 966, 1244, 1611, 1633
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 6 cut(s) 264, 394, 490, 948, 1694, 1944
Bse118I RCCGGY 1 cut(s) 353
Bse3DI GCAATG 3 cut(s) 75, 867, 1931
Bse8I GATNNNNATC 1 cut(s) 120
BseBI CCWGG 3 cut(s) 967, 1036, 1278
BseDI CCNNGG 4 cut(s) 966, 1244, 1611, 1633
BseGI GGATG 4 cut(s) 962, 1048, 1315, 1456
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 6 cut(s) 264, 394, 490, 948, 1694, 1944
BseMI GCAATG 3 cut(s) 75, 867, 1931
BseMII CTCAG 2 cut(s) 1488, 1649
BseXI GCAGC 8 cut(s) 67, 358, 454, 538, 1448, 1720, 1723, 2037
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 846
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 3 cut(s) 576, 750, 1684
BshTI ACCGGT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 1869
BsiSI CCGG 2 cut(s) 354, 1472
BslFI GGGAC 3 cut(s) 194, 280, 983
BslI CCNNNNNNNGG 6 cut(s) 264, 394, 490, 948, 1694, 1944
BsmAI GTCTC 4 cut(s) 633, 1331, 1418, 1892
BsmBI CGTCTC 3 cut(s) 633, 1331, 1892
BsmFI GGGAC 3 cut(s) 194, 280, 983
BsmI GAATGC 3 cut(s) 1134, 1340, 1630
BsnI GGCC 3 cut(s) 576, 750, 1684
Bsp1286I GDGCHC 1 cut(s) 1869
Bsp143I GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
Bsp19I CCATGG 2 cut(s) 1244, 1633
Bsp68I TCGCGA 1 cut(s) 846
BspANI GGCC 3 cut(s) 576, 750, 1684
BspCNI CTCAG 2 cut(s) 1489, 1650
BspFNI CGCG 1 cut(s) 846
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 4 cut(s) 358, 454, 1685, 1817
BspMAI CTGCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 690, 1536
BsrDI GCAATG 3 cut(s) 75, 867, 1931
BsrFI RCCGGY 1 cut(s) 353
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 966, 1244, 1611, 1633
BssMI GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
BssT1I CCWWGG 2 cut(s) 1244, 1633
Bst2UI CCWGG 3 cut(s) 967, 1036, 1278
Bst4CI ACNGT 7 cut(s) 452, 529, 646, 914, 1159, 1560, 1885
Bst6I CTCTTC 2 cut(s) 687, 768
BstAPI GCANNNNNTGC 1 cut(s) 1442
BstC8I GCNNGC 2 cut(s) 241, 1929
BstDEI CTNAG 5 cut(s) 1497, 1658, 1718, 1968, 2037
BstDSI CCRYGG 2 cut(s) 1244, 1633
BstF5I GGATG 4 cut(s) 962, 1048, 1315, 1456
BstFNI CGCG 1 cut(s) 846
BstHHI GCGC 2 cut(s) 278, 546
BstKTI GATC 6 cut(s) 325, 685, 1531, 1541, 1780, 2077
BstMAI GTCTC 4 cut(s) 633, 1331, 1418, 1892
BstMBI GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 5 cut(s) 19, 377, 473, 1442, 1933
BstNI CCWGG 3 cut(s) 967, 1036, 1278
BstNSI RCATGY 3 cut(s) 45, 1023, 1805
BstSCI CCNGG 4 cut(s) 965, 1034, 1276, 1470
BstSFI CTRYAG 2 cut(s) 171, 2019
BstUI CGCG 1 cut(s) 846
BstV1I GCAGC 8 cut(s) 67, 358, 454, 538, 1448, 1720, 1723, 2037
BsuRI GGCC 3 cut(s) 576, 750, 1684
BtgI CCRYGG 2 cut(s) 1244, 1633
BtgZI GCGATG 1 cut(s) 861
BtsCI GGATG 4 cut(s) 962, 1048, 1315, 1456
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 7 cut(s) 318, 546, 804, 1164, 1299, 1494, 1881
BtuMI TCGCGA 1 cut(s) 846
Cac8I GCNNGC 2 cut(s) 241, 1929
CaiI CAGNNNCTG 2 cut(s) 671, 1442
CciI TCATGA 1 cut(s) 835
CfoI GCGC 2 cut(s) 278, 546
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 5 cut(s) 566, 575, 749, 1683, 1816
CseI GACGC 2 cut(s) 1313, 1335
Csp6I GTAC 4 cut(s) 90, 851, 1175, 1903
CspAI ACCGGT 1 cut(s) 353
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviQI GTAC 4 cut(s) 90, 851, 1175, 1903
DdeI CTNAG 5 cut(s) 1497, 1658, 1718, 1968, 2037
DpnI GATC 6 cut(s) 324, 684, 1530, 1540, 1779, 2076
DpnII GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
DraIII CACNNNGTG 2 cut(s) 158, 789
Eam1104I CTCTTC 2 cut(s) 687, 768
EarI CTCTTC 2 cut(s) 687, 768
Eco130I CCWWGG 2 cut(s) 1244, 1633
Eco47I GGWCC 2 cut(s) 566, 1816
Eco57I CTGAAG 5 cut(s) 44, 78, 792, 957, 1130
EcoO109I RGGNCCY 2 cut(s) 1683, 1816
EcoRI GAATTC 1 cut(s) 954
EcoRII CCWGG 3 cut(s) 965, 1034, 1276
EcoT14I CCWWGG 2 cut(s) 1244, 1633
ErhI CCWWGG 2 cut(s) 1244, 1633
Esp3I CGTCTC 3 cut(s) 633, 1331, 1892
FalI AAGNNNNNCTT 2 cut(s) 1661, 1693
FaqI GGGAC 3 cut(s) 194, 280, 983
FauNDI CATATG 1 cut(s) 926
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 2 cut(s) 1491, 2018
Fnu4HI GCNGC 8 cut(s) 81, 372, 468, 552, 1437, 1734, 1737, 2051
FokI GGATG 4 cut(s) 949, 1035, 1322, 1463
Fsp4HI GCNGC 8 cut(s) 81, 372, 468, 552, 1437, 1734, 1737, 2051
FspBI CTAG 1 cut(s) 746
GlaI GCGC 2 cut(s) 277, 545
GluI GCNGC 8 cut(s) 81, 372, 468, 552, 1437, 1734, 1737, 2051
GsuI CTGGAG 4 cut(s) 70, 186, 648, 1616
HaeIII GGCC 3 cut(s) 576, 750, 1684
HapII CCGG 2 cut(s) 354, 1472
HgaI GACGC 2 cut(s) 1313, 1335
HhaI GCGC 2 cut(s) 278, 546
Hin6I GCGC 2 cut(s) 276, 544
HinP1I GCGC 2 cut(s) 276, 544
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 2 cut(s) 1227, 1663
HinfI GANTC 8 cut(s) 62, 70, 268, 413, 971, 1031, 1394, 2003
HpaII CCGG 2 cut(s) 354, 1472
HphI GGTGA 3 cut(s) 135, 1316, 1874
Hpy166II GTNNAC 8 cut(s) 388, 484, 649, 825, 1162, 1492, 1905, 2019
Hpy188I TCNGA 6 cut(s) 633, 772, 1110, 1365, 1659, 1751
Hpy188III TCNNGA 8 cut(s) 203, 569, 665, 836, 845, 1142, 1391, 1669
Hpy8I GTNNAC 8 cut(s) 388, 484, 649, 825, 1162, 1492, 1905, 2019
HpyAV CCTTC 5 cut(s) 222, 325, 534, 1019, 1664
HpyCH4III ACNGT 7 cut(s) 452, 529, 646, 914, 1159, 1560, 1885
HpyCH4IV ACGT 2 cut(s) 626, 1901
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 377, 473, 1442, 1933
HpyF3I CTNAG 5 cut(s) 1497, 1658, 1718, 1968, 2037
HpySE526I ACGT 2 cut(s) 626, 1901
HspAI GCGC 2 cut(s) 276, 544
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
LmnI GCTCC 2 cut(s) 232, 667
Lsp1109I GCAGC 8 cut(s) 67, 358, 454, 538, 1448, 1720, 1723, 2037
LweI GCATC 6 cut(s) 106, 322, 367, 463, 971, 1183
MaeI CTAG 1 cut(s) 746
MaeII ACGT 2 cut(s) 626, 1901
MaeIII GTNAC 5 cut(s) 67, 781, 1239, 1606, 1743
MalI GATC 6 cut(s) 324, 684, 1530, 1540, 1779, 2076
MboI GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
MboII GAAGA 9 cut(s) 646, 649, 704, 785, 1012, 1130, 1202, 1960, 2054
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 1869
MlyI GAGTC 6 cut(s) 56, 64, 262, 407, 965, 1040
MmeI TCCRAC 3 cut(s) 793, 1774, 1820
MroXI GAANNNNTTC 2 cut(s) 1338, 1708
MslI CAYNNNNRTG 5 cut(s) 114, 330, 1020, 1698, 1806
MspA1I CMGCKG 2 cut(s) 98, 1544
MspI CCGG 2 cut(s) 354, 1472
MspR9I CCNGG 4 cut(s) 967, 1036, 1278, 1472
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 3 cut(s) 1134, 1340, 1630
MvaI CCWGG 3 cut(s) 967, 1036, 1278
MvnI CGCG 1 cut(s) 846
MwoI GCNNNNNNNGC 5 cut(s) 19, 377, 473, 1442, 1933
NciI CCSGG 1 cut(s) 1472
NcoI CCATGG 2 cut(s) 1244, 1633
NdeI CATATG 1 cut(s) 926
NdeII GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
NlaIV GGNNCC 4 cut(s) 358, 454, 1685, 1817
NmuCI GTSAC 4 cut(s) 67, 781, 1606, 1743
NruI TCGCGA 1 cut(s) 846
NspI RCATGY 3 cut(s) 45, 1023, 1805
PagI TCATGA 1 cut(s) 835
PciI ACATGT 1 cut(s) 1019
PctI GAATGC 3 cut(s) 1134, 1340, 1630
PdmI GAANNNNTTC 2 cut(s) 1338, 1708
PfeI GAWTC 2 cut(s) 1394, 2003
PflFI GACNNNGTC 1 cut(s) 1814
PflMI CCANNNNNTGG 3 cut(s) 394, 490, 1694
PfoI TCCNGGA 1 cut(s) 1034
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 8 cut(s) 82, 373, 469, 553, 1438, 1735, 1738, 2052
PleI GAGTC 6 cut(s) 56, 64, 262, 407, 965, 1039
PpsI GAGTC 6 cut(s) 56, 64, 262, 407, 965, 1039
PpuMI RGGWCCY 1 cut(s) 1816
PscI ACATGT 1 cut(s) 1019
PsiI TTATAA 2 cut(s) 1221, 1233
Psp5II RGGWCCY 1 cut(s) 1816
Psp6I CCWGG 3 cut(s) 965, 1034, 1276
PspGI CCWGG 3 cut(s) 965, 1034, 1276
PspN4I GGNNCC 4 cut(s) 358, 454, 1685, 1817
PspPI GGNCC 5 cut(s) 566, 575, 749, 1683, 1816
PspPPI RGGWCCY 1 cut(s) 1816
PstI CTGCAG 1 cut(s) 175
PstNI CAGNNNCTG 2 cut(s) 671, 1442
PsyI GACNNNGTC 1 cut(s) 1814
PvuII CAGCTG 2 cut(s) 98, 1544
RruI TCGCGA 1 cut(s) 846
RsaI GTAC 4 cut(s) 91, 852, 1176, 1904
RsaNI GTAC 4 cut(s) 90, 851, 1175, 1903
RseI CAYNNNNRTG 5 cut(s) 114, 330, 1020, 1698, 1806
SatI GCNGC 8 cut(s) 81, 372, 468, 552, 1437, 1734, 1737, 2051
Sau3AI GATC 6 cut(s) 322, 682, 1528, 1538, 1777, 2074
Sau96I GGNCC 5 cut(s) 566, 575, 749, 1683, 1816
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 6 cut(s) 56, 64, 262, 407, 965, 1040
ScrFI CCNGG 4 cut(s) 967, 1036, 1278, 1472
SduI GDGCHC 1 cut(s) 1869
SfaNI GCATC 6 cut(s) 106, 322, 367, 463, 971, 1183
SfcI CTRYAG 2 cut(s) 171, 2019
SinI GGWCC 2 cut(s) 566, 1816
SmiMI CAYNNNNRTG 5 cut(s) 114, 330, 1020, 1698, 1806
SmlI CTYRAG 2 cut(s) 1170, 1678
SmoI CTYRAG 2 cut(s) 1170, 1678
SspI AATATT 1 cut(s) 1288
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 4 cut(s) 965, 1034, 1276, 1470
StyI CCWWGG 2 cut(s) 1244, 1633
TaaI ACNGT 7 cut(s) 452, 529, 646, 914, 1159, 1560, 1885
TaiI ACGT 2 cut(s) 629, 1904
TaqI TCGA 1 cut(s) 1887
TaqII GACCGA 1 cut(s) 1625
TatI WGTACW 2 cut(s) 89, 850
TfiI GAWTC 2 cut(s) 1394, 2003
TscAI CASTG 7 cut(s) 325, 553, 811, 1164, 1306, 1501, 1888
TseFI GTSAC 4 cut(s) 67, 781, 1606, 1743
TseI GCWGC 8 cut(s) 80, 371, 467, 551, 1436, 1733, 1736, 2050
Tsp45I GTSAC 4 cut(s) 67, 781, 1606, 1743
TspDTI ATGAA 6 cut(s) 824, 852, 1331, 1682, 1785, 1995
TspGWI ACGGA 1 cut(s) 1960
TspRI CASTG 7 cut(s) 325, 553, 811, 1164, 1306, 1501, 1888
Tth111I GACNNNGTC 1 cut(s) 1814
Van91I CCANNNNNTGG 3 cut(s) 394, 490, 1694
VpaK11BI GGWCC 2 cut(s) 566, 1816
XapI RAATTY 3 cut(s) 839, 954, 1040
XceI RCATGY 3 cut(s) 45, 1023, 1805
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XmiI GTMKAC 2 cut(s) 1491, 2018
XmnI GAANNNNTTC 2 cut(s) 1338, 1708
XspI CTAG 1 cut(s) 746
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.