Prupe.1G104800_v2.0.a1

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000251
Physical Location & Seq
Forward (+)
8431829 .. 8435435
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G104800.3

Sequence Viewer

Length: 2238 bp
ATGGCTGCAAAGAAGGTTATAGCAATATGCCAATCAGGTGGAGAATTTGTGACGAATAAGGATGGAAGTTTATCGTACACTGGGGGTGAGGCCTATGCGATTGACATTGATCAACAAACACTTCTTGGTGATTTCAAGTCCGAAATAGCTGATATGTTTAATTGTAGTGCTGAAACAATGTCCATCAAGTATTTCCTTCCGGGCAATAAGAAGACTCTCATTACAATCTCTAAAGATAAGGACTTGCAACGCATGGTCAATTTCCTTGGGGATACAGCCACAGTCGATGTTTTTGTCATGTCAGAGGAAGCCGCTGCTCGAAATGTGTCGAACATGCCTGCTAGTAGGTCAAGCAGGACAACTGTGTCAGAAGCAGTGGTTCCTATCGTTGAGCCTATTGATGTGCGAGTTGATACTTGCAATGCCATTGACCAAATTGATATGGAACTCCATGAAACCCCTTTGGTTTCTGTTCTTGGTTCTTCTAGTGATGATAAGCATCCTAAAGCTGCACAACAGTGGGAAAATACCATCACTGGTGTGGACCAAAGGTTTAATAGTTTTGGTGAATTCCGAGAAGCATTGCATAAGTTTTCAATTGCACATGGCTTCGCGTATAGGTACAAGAAAAATGACAGTCATCGTGTTACTGTCAAATGCAAATCTCAAGGTTGCCCATGGAGGATATATGCATCAAGGTTGTCTACTACCCAGTTGATTTGTATCAAAAAAATGAATACAGATCATACATGTGAAGGAGCTGCTGTGAAAGCTGGGTATCGGGCGACTAGAGGTTGGGTGGGAAGTATCATAAAGGAGAAGTTGAAAGTTTCCCCTAACTACAAGCCAAAGGATATAGCAGACGACATTAAGCGAGAATATGGGATTCAATTGAATTATTCTCAGGCATGGCGTGCCAAAGAGATTGCCAGGGAGCAGCTTCAAGGCTCCTATAAAGAGGCCTATAATCAGTTGCCATATTTCTGTGAGAGGATAAAGGAAACTAATCCGGGGAGTGTTGCTGCATTTACCACTAAGGAGGACTCAAGCTTCCATCGCTTCTTTGTATCTTTCCATGCATCAATTGTGGGTTTCCGAGAAGGTTGCCGCCCTCTCATTTTTCTTGATAGCACTCCTCTGAACTCAAAATATCAAGGAGTTTTGTTGGCCGCAATAGCGGCAGATGGTGATGATGGTATCTTTCCAGTAGCATTTGCTGTTGTGGATGCTGAGACTGATGATAACTGGCATTGGTTCTTATTAGAACTGAAATCTGCAGTGTCAATATCTCAGCAGATTACATTTGTTGCAGATGTTCAGAATGGTTTGAAAAAGTCATTGACTGAGGTATTTGATAAATGCTATCACTGCTATTGTTTGAGGCATCTTGCTGAAAAACTCAACAAGGACTTGAAGGGGCAATTTTCTCATGAGGCAAGACGATTTATGATCAATGATTTTTATGCTGCTGCTTATGCACCCAAACTGGAGGCTTTCCAGCGTAGTGCTGATAACATAAAAGGTATTTCACCTGAAGCTTACAATTGGGTCATACAAAGTGGGCCAGAGCACTGGGCTAATGCATTCTCTGGAGGAGCCAGGTACAATCATATGACATCAAACTTTGGACAGCAGTTCTACAGCTGGGTATCAGAGGCACATGAGTTGCCAATTACACAGATGATTGATGTATTACGAGGTAAGACGATGGAAGCCTTCTATTCACGCAGGGTGGAGTCCAACCAGTGGGTAACAAGATTAACTCCATCTAAAGAGGAAAAGCTTCAAAAAGAAACGACAATTGCTCGATCACTTCAGGTGTTGCTCTCACAAGGTAGCACATTCGAGGTTCGTGGAGAATCTGTTGATATTGTTGATATCGACCATTGGGATTGTAGCTGTAAGGGATGGCAACTTACTGGTCTGCCTTGCTGCCATGCTATTGCTGTCTTTGAATGCATTGGTAGGAACCCATATGATTACTGCTCCAGATACTTCACAGTCGAGAGTTACCGTTCAACTTATGCAGAATCAATTCATCCTGTTCCTAATGTAGACAGGCCACTCCCAGGTGAATCAAGCCTGGCAGCAGTTACTGTTACCCCTCCACCAACCAGACGGCCGCCAGGCCGGCCAAAGATGAAGCAGGCTGAATCATTAGACATAATAAAACGTCAGCTCCAGTGTAGCAAGTGTAAGGGGCTTGGCCACAATAAGAAGACGTGTAAAGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

746

Amino Acids

83.73

Weight (kDa)

7.93

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 1746
AccI GTMKAC 2 cut(s) 704, 2055
AccII CGCG 1 cut(s) 614
AciI CCGC 5 cut(s) 312, 1108, 1170, 1178, 2123
AcoI YGGCCR 4 cut(s) 1167, 2120, 2132, 2206
AcsI RAATTY 2 cut(s) 44, 569
AcuI CTGAAG 2 cut(s) 1554, 1799
AfaI GTAC 3 cut(s) 77, 623, 1604
AfiI CCNNNNNNNGG 2 cut(s) 1746, 2069
AflIII ACRYGT 2 cut(s) 749, 2222
AjiI CACGTC 1 cut(s) 2223
AjnI CCWGG 5 cut(s) 929, 1598, 2068, 2082, 2125
AleI CACNNNNGTG 2 cut(s) 517, 539
Alw21I GWGCWC 1 cut(s) 1572
Alw26I GTCTC 1 cut(s) 1226
AlwNI CAGNNNCTG 1 cut(s) 2096
AoxI GGCC 9 cut(s) 90, 960, 1167, 1562, 2060, 2120, 2128, 2132, 2206
ApoI RAATTY 2 cut(s) 44, 569
Asp700I GAANNNNTTC 2 cut(s) 1782, 2034
AspS9I GGNCC 2 cut(s) 544, 1562
AsuC2I CCSGG 2 cut(s) 201, 1011
AsuHPI GGTGA 6 cut(s) 98, 140, 578, 1199, 1521, 2084
AvaII GGWCC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 2208
BbsI GAAGAC 2 cut(s) 218, 2225
Bbv12I GWGCWC 1 cut(s) 1572
BbvI GCAGC 9 cut(s) 301, 496, 748, 949, 1009, 1453, 1456, 1919, 2099
BccI CCATC 9 cut(s) 56, 191, 539, 1062, 1178, 1187, 1702, 1774, 1902
BceAI ACGGC 1 cut(s) 2135
BcgI CGANNNNNNTGC 2 cut(s) 1086, 1120
BciT130I CCWGG 5 cut(s) 931, 1600, 2070, 2084, 2127
BciVI GTATCC 1 cut(s) 265
BclI TGATCA 2 cut(s) 109, 1449
BcnI CCSGG 2 cut(s) 201, 1011
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 4 cut(s) 342, 486, 789, 2236
BfmI CTRYAG 2 cut(s) 1275, 1639
BfuI GTATCC 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 2131
Bme1390I CCNGG 7 cut(s) 201, 931, 1011, 1600, 2070, 2084, 2127
Bme18I GGWCC 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 2223
BmgT120I GGNCC 2 cut(s) 544, 1562
BmiI GGNNCC 4 cut(s) 381, 949, 1597, 1970
BmrFI CCNGG 7 cut(s) 201, 931, 1011, 1600, 2070, 2084, 2127
BmrI ACTGGG 3 cut(s) 90, 706, 1582
BmsI GCATC 5 cut(s) 508, 701, 1088, 1216, 1393
BmuI ACTGGG 3 cut(s) 90, 706, 1582
BpiI GAAGAC 2 cut(s) 218, 2225
BpmI CTGGAG 4 cut(s) 1508, 1611, 1972, 2165
BpuEI CTTGAG 2 cut(s) 651, 1030
BpuMI CCSGG 2 cut(s) 201, 1011
BsaBI GATNNNNATC 2 cut(s) 498, 722
BsaJI CCNNGG 5 cut(s) 265, 677, 930, 1010, 2068
BsaXI ACNNNNNCTCC 8 cut(s) 33, 63, 750, 780, 1848, 1878, 2163, 2193
Bsc4I CCNNNNNNNGG 2 cut(s) 1746, 2069
Bse118I RCCGGY 1 cut(s) 2130
Bse3DI GCAATG 2 cut(s) 427, 581
Bse8I GATNNNNATC 2 cut(s) 498, 722
BseBI CCWGG 5 cut(s) 931, 1600, 2070, 2084, 2127
BseDI CCNNGG 5 cut(s) 265, 677, 930, 1010, 2068
BseGI GGATG 5 cut(s) 67, 499, 1231, 1913, 2038
BseJI GATNNNNATC 2 cut(s) 498, 722
BseLI CCNNNNNNNGG 2 cut(s) 1746, 2069
BseMI GCAATG 2 cut(s) 427, 581
BseMII CTCAG 4 cut(s) 917, 1221, 1304, 1335
BseRI GAGGAG 2 cut(s) 1125, 1608
BseX3I CGGCCG 1 cut(s) 2120
BseXI GCAGC 9 cut(s) 301, 496, 748, 949, 1009, 1453, 1456, 1919, 2099
BseYI CCCAGC 2 cut(s) 773, 1644
BsgI GTGCAG 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 2123
BshFI GGCC 9 cut(s) 92, 962, 1169, 1564, 2062, 2122, 2130, 2134, 2208
BsiEI CGRYCG 1 cut(s) 2123
BsiHKAI GWGCWC 1 cut(s) 1572
BsiSI CCGG 3 cut(s) 200, 1010, 2131
BslI CCNNNNNNNGG 2 cut(s) 1746, 2069
BsmAI GTCTC 1 cut(s) 1226
BsmI GAATGC 2 cut(s) 1583, 1961
BsnI GGCC 9 cut(s) 92, 962, 1169, 1564, 2062, 2122, 2130, 2134, 2208
Bsp1286I GDGCHC 1 cut(s) 1572
Bsp143I GATC 4 cut(s) 109, 742, 1449, 1808
Bsp19I CCATGG 1 cut(s) 677
BspACI CCGC 5 cut(s) 312, 1108, 1170, 1178, 2123
BspANI GGCC 9 cut(s) 92, 962, 1169, 1564, 2062, 2122, 2130, 2134, 2208
BspCNI CTCAG 4 cut(s) 916, 1222, 1303, 1336
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 1 cut(s) 1429
BspLI GGNNCC 4 cut(s) 381, 949, 1597, 1970
BspMAI CTGCAG 1 cut(s) 1279
BsrDI GCAATG 2 cut(s) 427, 581
BsrFI RCCGGY 1 cut(s) 2130
BssAI RCCGGY 1 cut(s) 2130
BssECI CCNNGG 5 cut(s) 265, 677, 930, 1010, 2068
BssMI GATC 4 cut(s) 109, 742, 1449, 1808
BssT1I CCWWGG 2 cut(s) 265, 677
Bst2UI CCWGG 5 cut(s) 931, 1600, 2070, 2084, 2127
Bst4CI ACNGT 8 cut(s) 283, 364, 519, 638, 652, 2002, 2015, 2098
BstAPI GCANNNNNTGC 1 cut(s) 914
BstC8I GCNNGC 4 cut(s) 339, 915, 2132, 2148
BstDEI CTNAG 5 cut(s) 903, 1035, 1230, 1290, 1344
BstDSI CCRYGG 1 cut(s) 677
BstF5I GGATG 5 cut(s) 67, 499, 1231, 1913, 2038
BstFNI CGCG 1 cut(s) 614
BstKTI GATC 4 cut(s) 112, 745, 1452, 1811
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 4 cut(s) 109, 742, 1449, 1808
BstMCI CGRYCG 1 cut(s) 2123
BstMWI GCNNNNNNNGC 8 cut(s) 770, 914, 1056, 1175, 1178, 1368, 1475, 2131
BstNI CCWGG 5 cut(s) 931, 1600, 2070, 2084, 2127
BstNSI RCATGY 2 cut(s) 337, 753
BstSCI CCNGG 7 cut(s) 199, 929, 1009, 1598, 2068, 2082, 2125
BstSFI CTRYAG 2 cut(s) 1275, 1639
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 9 cut(s) 301, 496, 748, 949, 1009, 1453, 1456, 1919, 2099
BstV2I GAAGAC 2 cut(s) 218, 2225
BstXI CCANNNNNNTGG 2 cut(s) 38, 1572
BstZI CGGCCG 1 cut(s) 2120
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 9 cut(s) 92, 962, 1169, 1564, 2062, 2122, 2130, 2134, 2208
BtgI CCRYGG 1 cut(s) 677
BtgZI GCGATG 1 cut(s) 1040
BtrI CACGTC 1 cut(s) 2223
BtsCI GGATG 5 cut(s) 67, 499, 1231, 1913, 2038
BtsI GCAGTG 3 cut(s) 381, 1284, 1366
BtsIMutI CAGTG 9 cut(s) 78, 381, 524, 534, 1284, 1366, 1570, 1751, 2189
Cac8I GCNNGC 4 cut(s) 339, 915, 2132, 2148
CaiI CAGNNNCTG 1 cut(s) 2096
CciI TCATGA 1 cut(s) 1429
Cfr10I RCCGGY 1 cut(s) 2130
Cfr13I GGNCC 2 cut(s) 544, 1562
Csp6I GTAC 3 cut(s) 76, 622, 1603
CviQI GTAC 3 cut(s) 76, 622, 1603
DdeI CTNAG 5 cut(s) 903, 1035, 1230, 1290, 1344
DpnI GATC 4 cut(s) 111, 744, 1451, 1810
DpnII GATC 4 cut(s) 109, 742, 1449, 1808
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 4 cut(s) 1167, 2120, 2132, 2206
EagI CGGCCG 1 cut(s) 2120
EclXI CGGCCG 1 cut(s) 2120
Eco130I CCWWGG 2 cut(s) 265, 677
Eco147I AGGCCT 2 cut(s) 92, 962
Eco32I GATATC 1 cut(s) 1879
Eco47I GGWCC 1 cut(s) 544
Eco52I CGGCCG 1 cut(s) 2120
Eco57I CTGAAG 2 cut(s) 1554, 1799
EcoRI GAATTC 1 cut(s) 569
EcoRII CCWGG 5 cut(s) 929, 1598, 2068, 2082, 2125
EcoRV GATATC 1 cut(s) 1879
EcoT14I CCWWGG 2 cut(s) 265, 677
EcoT22I ATGCAT 4 cut(s) 694, 1081, 1585, 1961
ErhI CCWWGG 2 cut(s) 265, 677
FauNDI CATATG 2 cut(s) 1611, 1975
FbaI TGATCA 2 cut(s) 109, 1449
FblI GTMKAC 2 cut(s) 704, 2055
FokI GGATG 5 cut(s) 74, 486, 1238, 1920, 2025
FseI GGCCGGCC 1 cut(s) 2134
FspBI CTAG 4 cut(s) 342, 486, 789, 2236
GsaI CCCAGC 2 cut(s) 777, 1648
GsuI CTGGAG 4 cut(s) 1508, 1611, 1972, 2165
HaeIII GGCC 9 cut(s) 92, 962, 1169, 1564, 2062, 2122, 2130, 2134, 2208
HapII CCGG 3 cut(s) 200, 1010, 2131
HindIII AAGCTT 3 cut(s) 1048, 1536, 1781
HinfI GANTC 9 cut(s) 214, 886, 1043, 1736, 1859, 2030, 2075, 2153, 2231
HpaII CCGG 3 cut(s) 200, 1010, 2131
HphI GGTGA 6 cut(s) 98, 140, 578, 1199, 1521, 2084
Hpy166II GTNNAC 4 cut(s) 78, 544, 705, 2056
Hpy188I TCNGA 8 cut(s) 142, 304, 370, 575, 1097, 1140, 1320, 1654
Hpy188III TCNNGA 5 cut(s) 1124, 1430, 1590, 1989, 2005
Hpy8I GTNNAC 4 cut(s) 78, 544, 705, 2056
HpyAV CCTTC 6 cut(s) 7, 206, 749, 1094, 1408, 1726
HpyCH4III ACNGT 8 cut(s) 283, 364, 519, 638, 652, 2002, 2015, 2098
HpyCH4IV ACGT 2 cut(s) 2173, 2222
HpyF10VI GCNNNNNNNGC 8 cut(s) 770, 914, 1056, 1175, 1178, 1368, 1475, 2131
HpyF3I CTNAG 5 cut(s) 903, 1035, 1230, 1290, 1344
HpySE526I ACGT 2 cut(s) 2173, 2222
KroI GCCGGC 1 cut(s) 2130
KroNI GCCGGC 1 cut(s) 2132
Ksp22I TGATCA 2 cut(s) 109, 1449
Kzo9I GATC 4 cut(s) 109, 742, 1449, 1808
LmnI GCTCC 6 cut(s) 758, 934, 953, 1595, 1991, 2184
Lsp1109I GCAGC 9 cut(s) 301, 496, 748, 949, 1009, 1453, 1456, 1919, 2099
LweI GCATC 5 cut(s) 508, 701, 1088, 1216, 1393
MaeI CTAG 4 cut(s) 342, 486, 789, 2236
MaeII ACGT 2 cut(s) 2173, 2222
MaeIII GTNAC 6 cut(s) 49, 646, 1750, 2009, 2092, 2098
MalI GATC 4 cut(s) 111, 744, 1451, 1810
MboI GATC 4 cut(s) 109, 742, 1449, 1808
MboII GAAGA 3 cut(s) 223, 474, 2230
MfeI CAATTG 5 cut(s) 597, 890, 1083, 1543, 1800
MhlI GDGCHC 1 cut(s) 1572
MlsI TGGCCA 1 cut(s) 2208
MluNI TGGCCA 1 cut(s) 2208
MlyI GAGTC 3 cut(s) 208, 1037, 1745
MmeI TCCRAC 1 cut(s) 1764
Mox20I TGGCCA 1 cut(s) 2208
Mph1103I ATGCAT 4 cut(s) 694, 1081, 1585, 1961
MroNI GCCGGC 1 cut(s) 2130
MroXI GAANNNNTTC 2 cut(s) 1782, 2034
MscI TGGCCA 1 cut(s) 2208
MseI TTAA 4 cut(s) 159, 555, 870, 1760
MslI CAYNNNNRTG 3 cut(s) 517, 539, 750
Msp20I TGGCCA 1 cut(s) 2208
MspA1I CMGCKG 2 cut(s) 314, 1644
MspI CCGG 3 cut(s) 200, 1010, 2131
MspR9I CCNGG 7 cut(s) 201, 931, 1011, 1600, 2070, 2084, 2127
MunI CAATTG 5 cut(s) 597, 890, 1083, 1543, 1800
Mva1269I GAATGC 2 cut(s) 1583, 1961
MvaI CCWGG 5 cut(s) 931, 1600, 2070, 2084, 2127
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 8 cut(s) 770, 914, 1056, 1175, 1178, 1368, 1475, 2131
NaeI GCCGGC 1 cut(s) 2132
NciI CCSGG 2 cut(s) 201, 1011
NcoI CCATGG 1 cut(s) 677
NdeI CATATG 2 cut(s) 1611, 1975
NdeII GATC 4 cut(s) 109, 742, 1449, 1808
NgoMIV GCCGGC 1 cut(s) 2130
NlaIV GGNNCC 4 cut(s) 381, 949, 1597, 1970
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 4 cut(s) 694, 1081, 1585, 1961
NspI RCATGY 2 cut(s) 337, 753
OliI CACNNNNGTG 2 cut(s) 517, 539
PagI TCATGA 1 cut(s) 1429
PceI AGGCCT 2 cut(s) 92, 962
PciI ACATGT 1 cut(s) 749
PctI GAATGC 2 cut(s) 1583, 1961
PdiI GCCGGC 1 cut(s) 2132
PdmI GAANNNNTTC 2 cut(s) 1782, 2034
PfeI GAWTC 6 cut(s) 886, 1859, 2030, 2075, 2153, 2231
PflMI CCANNNNNTGG 1 cut(s) 1746
PleI GAGTC 3 cut(s) 208, 1037, 1744
PpsI GAGTC 3 cut(s) 208, 1037, 1744
PscI ACATGT 1 cut(s) 749
Psp6I CCWGG 5 cut(s) 929, 1598, 2068, 2082, 2125
PspFI CCCAGC 2 cut(s) 773, 1644
PspGI CCWGG 5 cut(s) 929, 1598, 2068, 2082, 2125
PspN4I GGNNCC 4 cut(s) 381, 949, 1597, 1970
PspPI GGNCC 2 cut(s) 544, 1562
PstI CTGCAG 1 cut(s) 1279
PstNI CAGNNNCTG 1 cut(s) 2096
PvuII CAGCTG 1 cut(s) 1644
RigI GGCCGGCC 1 cut(s) 2134
RsaI GTAC 3 cut(s) 77, 623, 1604
RsaNI GTAC 3 cut(s) 76, 622, 1603
RseI CAYNNNNRTG 3 cut(s) 517, 539, 750
SaqAI TTAA 4 cut(s) 159, 555, 870, 1760
Sau3AI GATC 4 cut(s) 109, 742, 1449, 1808
Sau96I GGNCC 2 cut(s) 544, 1562
SchI GAGTC 3 cut(s) 208, 1037, 1745
ScrFI CCNGG 7 cut(s) 201, 931, 1011, 1600, 2070, 2084, 2127
SduI GDGCHC 1 cut(s) 1572
SfaNI GCATC 5 cut(s) 508, 701, 1088, 1216, 1393
SfcI CTRYAG 2 cut(s) 1275, 1639
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 3 cut(s) 517, 539, 750
SmlI CTYRAG 2 cut(s) 666, 1045
SmoI CTYRAG 2 cut(s) 666, 1045
SseBI AGGCCT 2 cut(s) 92, 962
SsiI CCGC 5 cut(s) 312, 1108, 1170, 1178, 2123
SspMI CTAG 4 cut(s) 342, 486, 789, 2236
StuI AGGCCT 2 cut(s) 92, 962
StyD4I CCNGG 7 cut(s) 199, 929, 1009, 1598, 2068, 2082, 2125
StyI CCWWGG 2 cut(s) 265, 677
TaaI ACNGT 8 cut(s) 283, 364, 519, 638, 652, 2002, 2015, 2098
TaiI ACGT 2 cut(s) 2176, 2225
TaqI TCGA 7 cut(s) 285, 319, 329, 1807, 1845, 1881, 2004
TauI GCSGC 5 cut(s) 314, 1110, 1172, 1181, 2125
TfiI GAWTC 6 cut(s) 886, 1859, 2030, 2075, 2153, 2231
Tru1I TTAA 4 cut(s) 159, 555, 870, 1760
Tru9I TTAA 4 cut(s) 159, 555, 870, 1760
TscAI CASTG 9 cut(s) 85, 381, 524, 541, 1284, 1373, 1577, 1751, 2189
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 4 cut(s) 468, 749, 2027, 2156
TspRI CASTG 9 cut(s) 85, 381, 524, 541, 1284, 1373, 1577, 1751, 2189
Van91I CCANNNNNTGG 1 cut(s) 1746
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 2 cut(s) 44, 569
XceI RCATGY 2 cut(s) 337, 753
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmiI GTMKAC 2 cut(s) 704, 2055
XmnI GAANNNNTTC 2 cut(s) 1782, 2034
XspI CTAG 4 cut(s) 342, 486, 789, 2236
Zsp2I ATGCAT 4 cut(s) 694, 1081, 1585, 1961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.