pycom15g23420

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000251
Physical Location & Seq
Reverse (-)
17518354 .. 17518584
231 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23420.1

Sequence Viewer

Length: 231 bp
ATGGCAGCTGTTCGTGGATCCTTTGAAGAAGATTATCGACTCCTTCCTCAATACTGTGACCAGATCAGAAGAACCAATCCTGGAAGTATTGCACAGGTTTATGGGAGTCCTGATGATAGTTCCTTCCAACGCCTATTTGTTTCATTACATGCATCTATATACGGGTTTCTGAATGCCTGTCGACCTCTTCTTGGTCTCGATAGGACTCATCTGAAAATTGGATGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

7.75

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AclWI GGATC 2 cut(s) 12, 25
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 2 cut(s) 12, 25
ApeKI GCWGC 1 cut(s) 5
BamHI GGATCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 17, 63
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 2 cut(s) 12, 25
BspTNI GGTCTC 1 cut(s) 200
BssMI GATC 2 cut(s) 17, 63
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 192
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 2 cut(s) 20, 66
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 17, 63
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtsCI GGATG 1 cut(s) 227
CviAII CATG 1 cut(s) 149
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
DpnI GATC 2 cut(s) 19, 65
DpnII GATC 2 cut(s) 17, 63
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 154
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 102, 150, 158, 160
FatI CATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 3 cut(s) 39, 106, 205
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 3 cut(s) 68, 171, 213
Hpy188III TCNNGA 2 cut(s) 110, 197
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 53, 133
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 92, 152
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 2 cut(s) 17, 63
LpnPI CCDG 6 cut(s) 66, 74, 80, 93, 123, 190
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 19, 65
MboI GATC 2 cut(s) 17, 63
MboII GAAGA 4 cut(s) 38, 41, 81, 179
MflI RGATCY 1 cut(s) 17
MluCI AATT 1 cut(s) 216
MlyI GAGTC 3 cut(s) 33, 115, 199
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 2 cut(s) 57, 195
Mph1103I ATGCAT 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 1 cut(s) 81
NdeII GATC 2 cut(s) 17, 63
NlaIII CATG 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 1 cut(s) 152
PctI GAATGC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 33, 114, 199
PpsI GAGTC 3 cut(s) 33, 114, 199
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 8
SalI GTCGAC 1 cut(s) 180
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 17, 63
SchI GAGTC 3 cut(s) 33, 115, 199
ScrFI CCNGG 1 cut(s) 81
SetI ASST 3 cut(s) 10, 99, 187
SfaNI GCATC 1 cut(s) 161
Sse9I AATT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 3 cut(s) 37, 181, 198
TasI AATT 1 cut(s) 216
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 132
XceI RCATGY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.