Rh2BG026800

MuDR family transposase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000251
Physical Location & Seq
Reverse (-)
1813832 .. 1820100
6269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG026800.1

Sequence Viewer

Length: 2820 bp
ATGGCGAGGGCAAAACTTATCTTAATCTGCCAGTGTGGTGGCGAATTCGTCAGGAAGGATGATGGAACCTTGTCATATACAGGAGGAGATGCACATGCAGTAGATATCAATCATGAAACGCTAATTGATGATCTCAAGTTGAAGTTAGCTGAAATGTGTAATTTAGAGCATAAATCTTTGTGCATCAAGTATTTTCTCCCAGGAAATAGGCGAACTCTCATCACTTTATCCAGTGATAAGGACTTGAAAAGGATGTATGAGTTCCACGGGAATGTGGTAACCGCTGATGTTTTTGTCATGGGAAAAGCAGGTTTTGATGCCGAAGAAGCCTTGAACACACTTCAAAGGGCATGTGGGATAAAACTGGCTGACTCTGTGACTCCCATTGCTGCCTCCAGTACTTCAGCTGTTGTTTTTCACGCTGATGCCAATCATTCTGTTGCAGTTAATTCACCAATTGCACCAAGTGATGTTAATACCGCAGTTGTTCCTACTGCTTCAAATAATACTCCAGATGTCCCTTCCCCTGTTCTTGCTCCACAACAAGCAGGCTCTATTATATCTGCCAAAGAAGGGACTCAAAGCGCAAGTGGAGTGGCTCACACCTCAAACACTTTTCCTGCCTTTACTGATCATGCAGTTGCTATGACTTCAAAGCCGACCGGTTCCATTTCTCTTGCTGCTGATGCAAGTGTCCACAGCTTGGACGTAAATGATATGGACTCTACCCCTGCTGGTGTTATTAGTTCCAGTCCAAATGGTTCCATTTCTGTTGCTGCTGGTGCAAGTGTCCACAGCTTGGACATAATTGATATGGACTGCACCCCTGCTGATACCGTTAAGAAACGAAGGCGCACTGCTGCATGGAAAATTGGTCCAGATGGCCCTACCATTGTTTCTGTCAAAGATGATATTGGGGATAAAGGAAAACCTACGTCTCGGAAGAAGAATACTGTTGACTATAAAACTGCTCCAGAAACTGATAACGAGGATCAGCAAGAAGAGATTGTGCTGTGTAAAGATAGTAATAGCATTGACCCTATTCAGGCTATTCTAGGCCCGTCAAATGATGTTCCATCTGAAGAGTTGGTCACATTGTGGAAAGATGGTATCACTGGGGTTGGACAGGAGTTCACAAGTGTTCATGAATTTCGCGATGTACTGCAAAAATATGCCATTGCTCATCGTTTTATGTATAGGTTAAAAAAGAATGATACTAACCGTGCAAGTTGCATATGTATTGCTGAAGCCTGTTCTTGGAGAATTCAAGCATCCTGGGACTCATCTACGGAAAAGTTTGTGATAAAGAAGATGGAGAAAAGGCATACATGTGAAGGGGAGTCCTGGAAATTTTATCATCCGAAAAAGAATTGGTTGGTTAGTATCATTAAAGACAGATTAACAGACAACCCACATCTGAAGCCGAAAGAAATTGTCAATAGCATTCTTCAGGATTTTGGAATTACAGTGAACTATACTCAAGTACGGCGTGGAATTGAAGATGCAAAGGAACAACTTATGGGTTCTTATAAAGAAGCTTATAACCAGTTACCTTGGTTTTGTGAGAAAATGGCAGAGGCAAATCCTGGTAGTAATATTAGGCTTTTCACTGGTGAGGATGGGAGATTTCAGCGTCTCTTTGAATGCTTTCATGCTTCAATACATGGCTTTCAGAATGGTTGCCGACCTATTATTTTTCTTGATTCTATGTCCTTAAAATCAAAATACCATGAGACATTTTTCGCAGCTACTGCTTTGGATGGAGATGATGGTGCTTTCCCGATTGCATTTGCCATAGTAGACACTGAGAATGATGATAACTGGCATTGGTTTTTGGATCAATTAAGATCAGCTGTTTCAACCACACAGTCCTTAACTATTGTCTTTGATAGAGAGAAAGGACTGGAGAAATTAGTGACTGAGGTATTTGAGAATTCCCACCATGGCTACACTATGCACCACCTTCTGAGAAGCTTCAAGAAAAACTTGAGGCCCCCATTTCATGGAGATGGAAAGGGTTCTTTGCTAAGTTGTTTCGTGGCTGCTGCCCAGTCACTCCGACTTGATGGTTTGAAGTATTTTACAGATCAAATTAAACAGGTTTCATCACATGCTTACGACTGGGTCCTCCAAATTGAACAAGAATGTTGGACAAATGTATTTTTCAAAGGTGAGCACTACAACCATATCACTGTCGATGTTGCAGAGACATACGCCAACTGGATAGAGGAAATGCGAGCATTGCCCATAGTACGGAAGATAGAAGTGTTAAGCTCTAAGCTGATGGAATTGATAAATACTCGTCGAACTGATTCATGCACTTGGTCTACAGAACTTACTCCATCTAAGGAAGAAAAGCTGCAACAAAAAATGTTACAAGCAGATCGCCTTAAAGTATTATTTTCAACTGATACTCTTTTTGAGGTTCATAATGATTCCATTAATGTTGTGGATCTCAACAAAGGGGAGTGTAGTTGTCTGGATTGGAAATCAACTGGGCTACCTTGCTGCCATGTTATTGCTGTCTTCAACTGCACAGGTAGGAATGTGTATGATTTTTGTTCAAGATATTATAAAGTTGACAACTTTCGTTCAACTTATTCGGAATCCATAACCACTGTGGCGGTGCCTTTCAAGCCTTTGGATAGTGATAAAATTGACTCAGAGGCCGAGAATGTACTTCCTCCTTCCATCTCCAGGCCACAAAGCCATGATAAGGAAAAACAGAAGAAAACAAAGGGTGTGGCAAAAAAGGAAGTGTTCTGCTCAAACTGCAAGGAAACAGGACATAATAAAGCTACATGCAAGGCAGGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE PB1 SWIM

Protein Analysis

939

Amino Acids

104.38

Weight (kDa)

6.1

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 24 - 90 2.1e-06 PB1 domain
DBD_Tnp_Mut PF03108 371 - 435 3.8e-18 MuDR family transposase
MULE PF10551 565 - 656 9.3e-15 MULE transposase domain
SWIM PF04434 817 - 845 7.6e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06740
fragaria_vesca FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_1g02210 FvH4_2g02692 FvH4_2g22241 FvH4_2g22241 FvH4_2g22241 FvH4_4g21561 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g01063 FvH4_6g02501 FvH4_6g02501
malus_domestica MD02G1020500.v1.1 MD04G1227400.v1.1 MD04G1236400.v1.1 MD05G1203600.v1.1 MD10G1190900.v1.1 MD12G1244100.v1.1 MD12G1255700.v1.1 MD13G1140100.v1.1 MD15G1396600.v1.1 MD16G1135600.v1.1
prunus_persica Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.1G104800_v2.0.a1 Prupe.6G346500_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.6G356400_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.7G251000_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G156200_v2.0.a1 Prupe.8G229900_v2.0.a1 Prupe.8G229900_v2.0.a1
pyrus_communis pycom02g01800 pycom02g16220 pycom04g20090 pycom04g21020 pycom04g21030 pycom05g19010 pycom10g16460 pycom12g18690 pycom12g22380 pycom12g23430 pycom13g12180 pycom15g14690 pycom15g23420 pycom15g35670 pycom16g11960
rosa_chinensis RchiOBHm_Chr2g0087301 RchiOBHm_Chr3g0448611 RchiOBHm_Chr3g0450381 RchiOBHm_Chr4g0427621 RchiOBHm_Chr6g0247111 RchiOBHm_Chr6g0289171 RchiOBHm_Chr7g0177141
rosa_laevigata RLG00000007221 RLG00000015852
rosa_multiflora Rmu_co8326617.1_g000001 Rmu_sc0003399.1_g000010
rosa_roxburghii Rroxscaffold_2G00153730 Rroxscaffold_5G00369250 Rroxscaffold_6G00426900 Rroxscaffold_6G00428110 Rroxscaffold_7G00179510 Rroxscaffold_7G00214340
rosa_rugosa Rorug01G0473800 Rorug01G0473900 Rorug01G0474000 Rorug02G0614200 Rorug02G0614300 Rorug02G0614400 Rorug02G0614500 Rorug02G0614600 Rorug02G0627200 Rorug02G0627300 Rorug02G0627400 Rorug02G0627500 Rorug05G0522400
rosa_samantha Rh2AG027500 Rh2BG026800 Rh2CG027900 Rh2DG027500 Rh3AG013600 Rh3AG027900 Rh3BG013400 Rh3BG028400 Rh3CG012500 Rh3CG027200 Rh3DG014200 Rh3DG028300 Rh4AG275400 Rh4BG281300 Rh4CG296600 Rh4DG278600 Rh6AG037400 Rh6AG037700 Rh6AG312600 Rh6BG032300 Rh6BG032600 Rh6BG319500 Rh6CG033400 Rh6CG326000 Rh6DG031100 Rh6DG311900 Rh7AG003400 Rh7CG003000 Rh7CG003100
rosa_wichuraiana Rw2G002170 Rw3G001000 Rw3G002170 Rw4G023880 Rw6G003210 Rw6G027010 Rw7G000280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1530, 1542, 2574
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 2626
AccB7I CCANNNNNTGG 3 cut(s) 703, 799, 2003
AccI GTMKAC 2 cut(s) 1800, 2327
AccII CGCG 1 cut(s) 1155
AciI CCGC 3 cut(s) 282, 480, 2624
AclWI GGATC 3 cut(s) 999, 1845, 2460
AcsI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1933
AcuI CTGAAG 5 cut(s) 387, 1101, 1266, 1433, 1439
AdeI CACNNNGTG 2 cut(s) 467, 1098
AfaI GTAC 5 cut(s) 400, 1161, 1485, 2253, 2679
AfiI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 2003, 2253, 2697, 2716
AflIII ACRYGT 1 cut(s) 1328
AgeI ACCGGT 1 cut(s) 662
AjnI CCWGG 5 cut(s) 199, 1274, 1343, 1585, 2696
Alw21I GWGCWC 1 cut(s) 2178
Alw26I GTCTC 4 cut(s) 942, 1640, 1727, 2201
AlwI GGATC 3 cut(s) 999, 1845, 2460
AlwNI CAGNNNCTG 2 cut(s) 980, 1751
AoxI GGCC 5 cut(s) 883, 1057, 1991, 2667, 2699
ApeKI GCWGC 9 cut(s) 389, 680, 776, 860, 1745, 2042, 2045, 2359, 2508
ApoI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1933
AseI ATTAAT 1 cut(s) 2442
AsiGI ACCGGT 1 cut(s) 662
Asp700I GAANNNNTTC 3 cut(s) 1647, 2017, 2311
AspLEI GCGC 2 cut(s) 587, 855
AspS9I GGNCC 5 cut(s) 875, 884, 1058, 1992, 2125
AsuHPI GGTGA 3 cut(s) 444, 1625, 2183
AvaII GGWCC 2 cut(s) 875, 2125
BanI GGYRCC 1 cut(s) 2626
BbsI GAAGAC 1 cut(s) 2518
Bbv12I GWGCWC 1 cut(s) 2178
BbvI GCAGC 9 cut(s) 376, 667, 763, 847, 1757, 2029, 2032, 2346, 2495
BceAI ACGGC 1 cut(s) 1502
BciT130I CCWGG 5 cut(s) 201, 1276, 1345, 1587, 2698
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 4 cut(s) 942, 1640, 1727, 2201
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 2328
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 9 cut(s) 390, 681, 777, 861, 1746, 2043, 2046, 2360, 2509
BlsI GCNGC 9 cut(s) 391, 682, 778, 862, 1747, 2044, 2047, 2361, 2510
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 5 cut(s) 201, 1276, 1345, 1587, 2698
Bme18I GGWCC 2 cut(s) 875, 2125
BmgT120I GGNCC 5 cut(s) 875, 884, 1058, 1992, 2125
BmiI GGNNCC 6 cut(s) 67, 667, 763, 1994, 2126, 2628
BmrFI CCNGG 5 cut(s) 201, 1276, 1345, 1587, 2698
BmrI ACTGGG 4 cut(s) 1125, 2044, 2131, 2505
BmsI GCATC 7 cut(s) 79, 192, 307, 415, 676, 1280, 1492
BmuI ACTGGG 4 cut(s) 1125, 2044, 2131, 2505
BpiI GAAGAC 1 cut(s) 2518
BpmI CTGGAG 5 cut(s) 379, 495, 957, 1925, 2680
BpuEI CTTGAG 3 cut(s) 119, 1464, 2008
BsaBI GATNNNNATC 2 cut(s) 108, 429
BsaJI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1942
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 2003, 2253, 2697, 2716
Bse118I RCCGGY 1 cut(s) 662
Bse3DI GCAATG 3 cut(s) 384, 1176, 2240
Bse8I GATNNNNATC 2 cut(s) 108, 429
BseBI CCWGG 5 cut(s) 201, 1276, 1345, 1587, 2698
BseDI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1942
BseGI GGATG 6 cut(s) 64, 258, 1271, 1357, 1624, 1765
BseJI GATNNNNATC 2 cut(s) 108, 429
BseLI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 2003, 2253, 2697, 2716
BseMI GCAATG 3 cut(s) 384, 1176, 2240
BseMII CTCAG 4 cut(s) 1797, 1911, 1958, 2676
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 9 cut(s) 376, 667, 763, 847, 1757, 2029, 2032, 2346, 2495
BsgI GTGCAG 2 cut(s) 805, 2518
Bsh1236I CGCG 1 cut(s) 1155
Bsh1285I CGRYCG 1 cut(s) 663
BshFI GGCC 5 cut(s) 885, 1059, 1993, 2669, 2701
BshNI GGYRCC 1 cut(s) 2626
BshTI ACCGGT 1 cut(s) 662
BsiEI CGRYCG 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 2178
BsiSI CCGG 1 cut(s) 663
BslFI GGGAC 3 cut(s) 503, 589, 1292
BslI CCNNNNNNNGG 9 cut(s) 573, 703, 799, 1045, 1257, 2003, 2253, 2697, 2716
BsmAI GTCTC 4 cut(s) 942, 1640, 1727, 2201
BsmBI CGTCTC 2 cut(s) 942, 1640
BsmFI GGGAC 3 cut(s) 503, 589, 1292
BsmI GAATGC 2 cut(s) 1443, 1649
BsnI GGCC 5 cut(s) 885, 1059, 1993, 2669, 2701
Bsp1286I GDGCHC 1 cut(s) 2178
Bsp143I GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
Bsp19I CCATGG 1 cut(s) 1942
Bsp68I TCGCGA 1 cut(s) 1155
BspACI CCGC 3 cut(s) 282, 480, 2624
BspANI GGCC 5 cut(s) 885, 1059, 1993, 2669, 2701
BspCNI CTCAG 4 cut(s) 1798, 1912, 1959, 2675
BspFNI CGCG 1 cut(s) 1155
BspHI TCATGA 2 cut(s) 112, 1144
BspLI GGNNCC 6 cut(s) 67, 667, 763, 1994, 2126, 2628
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 3 cut(s) 999, 1845, 2460
BspT107I GGYRCC 1 cut(s) 2626
BsrDI GCAATG 3 cut(s) 384, 1176, 2240
BsrFI RCCGGY 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 5 cut(s) 199, 265, 1275, 1553, 1942
BssMI GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
BssT1I CCWWGG 2 cut(s) 1553, 1942
Bst2UI CCWGG 5 cut(s) 201, 1276, 1345, 1587, 2698
Bst4CI ACNGT 7 cut(s) 838, 955, 1223, 1468, 1869, 2194, 2620
Bst6I CTCTTC 2 cut(s) 996, 1077
BstAPI GCANNNNNTGC 1 cut(s) 1751
BstC8I GCNNGC 3 cut(s) 550, 2238, 2812
BstDEI CTNAG 8 cut(s) 1806, 1920, 1967, 2027, 2277, 2346, 2662, 2817
BstDSI CCRYGG 2 cut(s) 265, 1942
BstEII GGTNACC 1 cut(s) 277
BstF5I GGATG 6 cut(s) 64, 258, 1271, 1357, 1624, 1765
BstFNI CGCG 1 cut(s) 1155
BstHHI GCGC 2 cut(s) 587, 855
BstKTI GATC 8 cut(s) 133, 634, 994, 1840, 1850, 2089, 2386, 2455
BstMAI GTCTC 4 cut(s) 942, 1640, 1727, 2201
BstMBI GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
BstMCI CGRYCG 1 cut(s) 663
BstMWI GCNNNNNNNGC 8 cut(s) 326, 686, 782, 1751, 2242, 2635, 2772, 2811
BstNI CCWGG 5 cut(s) 201, 1276, 1345, 1587, 2698
BstNSI RCATGY 5 cut(s) 98, 354, 1332, 2114, 2805
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 5 cut(s) 199, 1274, 1343, 1585, 2696
BstSFI CTRYAG 1 cut(s) 2328
BstUI CGCG 1 cut(s) 1155
BstV1I GCAGC 9 cut(s) 376, 667, 763, 847, 1757, 2029, 2032, 2346, 2495
BstV2I GAAGAC 1 cut(s) 2518
BstX2I RGATCY 1 cut(s) 2452
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 1 cut(s) 2452
BsuRI GGCC 5 cut(s) 885, 1059, 1993, 2669, 2701
BtgI CCRYGG 2 cut(s) 265, 1942
BtgZI GCGATG 1 cut(s) 1170
BtsCI GGATG 6 cut(s) 64, 258, 1271, 1357, 1624, 1765
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 9 cut(s) 38, 238, 855, 1113, 1473, 1608, 1803, 2190, 2616
BtuMI TCGCGA 1 cut(s) 1155
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 550, 2238, 2812
CaiI CAGNNNCTG 2 cut(s) 980, 1751
CciI TCATGA 2 cut(s) 112, 1144
CfoI GCGC 2 cut(s) 587, 855
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 5 cut(s) 875, 884, 1058, 1992, 2125
CseI GACGC 1 cut(s) 1622
Csp6I GTAC 5 cut(s) 399, 1160, 1484, 2252, 2678
CspAI ACCGGT 1 cut(s) 662
CspCI CAANNNNNGTGG 4 cut(s) 576, 611, 2724, 2759
CviQI GTAC 5 cut(s) 399, 1160, 1484, 2252, 2678
DdeI CTNAG 8 cut(s) 1806, 1920, 1967, 2027, 2277, 2346, 2662, 2817
DpnI GATC 8 cut(s) 132, 633, 993, 1839, 1849, 2088, 2385, 2454
DpnII GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
DraIII CACNNNGTG 2 cut(s) 467, 1098
Eam1104I CTCTTC 2 cut(s) 996, 1077
EarI CTCTTC 2 cut(s) 996, 1077
Eco130I CCWWGG 2 cut(s) 1553, 1942
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 875, 2125
Eco57I CTGAAG 5 cut(s) 387, 1101, 1266, 1433, 1439
Eco91I GGTNACC 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 1992, 2125
EcoO65I GGTNACC 1 cut(s) 277
EcoRI GAATTC 3 cut(s) 44, 1263, 1933
EcoRII CCWGG 5 cut(s) 199, 1274, 1343, 1585, 2696
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 1553, 1942
ErhI CCWWGG 2 cut(s) 1553, 1942
Esp3I CGTCTC 2 cut(s) 942, 1640
FalI AAGNNNNNCTT 2 cut(s) 1970, 2002
FaqI GGGAC 3 cut(s) 503, 589, 1292
FauNDI CATATG 1 cut(s) 1235
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 2 cut(s) 1800, 2327
Fnu4HI GCNGC 9 cut(s) 390, 681, 777, 861, 1746, 2043, 2046, 2360, 2509
FokI GGATG 6 cut(s) 71, 265, 1258, 1344, 1631, 1772
Fsp4HI GCNGC 9 cut(s) 390, 681, 777, 861, 1746, 2043, 2046, 2360, 2509
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 2 cut(s) 586, 854
GluI GCNGC 9 cut(s) 390, 681, 777, 861, 1746, 2043, 2046, 2360, 2509
GsuI CTGGAG 5 cut(s) 379, 495, 957, 1925, 2680
HaeIII GGCC 5 cut(s) 885, 1059, 1993, 2669, 2701
HapII CCGG 1 cut(s) 663
HgaI GACGC 1 cut(s) 1622
HhaI GCGC 2 cut(s) 587, 855
Hin6I GCGC 2 cut(s) 585, 853
HinP1I GCGC 2 cut(s) 585, 853
HincII GTYRAC 2 cut(s) 958, 2581
HindII GTYRAC 2 cut(s) 958, 2581
HindIII AAGCTT 2 cut(s) 1536, 1972
HpaII CCGG 1 cut(s) 663
HphI GGTGA 3 cut(s) 444, 1625, 2183
Hpy166II GTNNAC 8 cut(s) 697, 793, 958, 1134, 1471, 1801, 2328, 2581
Hpy188I TCNGA 9 cut(s) 942, 1081, 1362, 1419, 1674, 1968, 2060, 2605, 2665
Hpy8I GTNNAC 8 cut(s) 697, 793, 958, 1134, 1471, 1801, 2328, 2581
Hpy99I CGWCG 1 cut(s) 2307
HpyAV CCTTC 7 cut(s) 49, 531, 566, 843, 1328, 1973, 2697
HpyCH4III ACNGT 7 cut(s) 838, 955, 1223, 1468, 1869, 2194, 2620
HpyCH4IV ACGT 2 cut(s) 708, 935
HpyF10VI GCNNNNNNNGC 8 cut(s) 326, 686, 782, 1751, 2242, 2635, 2772, 2811
HpyF3I CTNAG 8 cut(s) 1806, 1920, 1967, 2027, 2277, 2346, 2662, 2817
HpySE526I ACGT 2 cut(s) 708, 935
HspAI GCGC 2 cut(s) 585, 853
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
LmnI GCTCC 2 cut(s) 541, 976
Lsp1109I GCAGC 9 cut(s) 376, 667, 763, 847, 1757, 2029, 2032, 2346, 2495
LweI GCATC 7 cut(s) 79, 192, 307, 415, 676, 1280, 1492
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 2 cut(s) 708, 935
MaeIII GTNAC 7 cut(s) 277, 376, 1090, 1548, 1915, 2052, 2373
MalI GATC 8 cut(s) 132, 633, 993, 1839, 1849, 2088, 2385, 2454
MboI GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 2452
MhlI GDGCHC 1 cut(s) 2178
MlyI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1349, 2654
MmeI TCCRAC 3 cut(s) 1102, 2083, 2129
MroXI GAANNNNTTC 3 cut(s) 1647, 2017, 2311
MslI CAYNNNNRTG 4 cut(s) 270, 423, 1329, 2007
MspA1I CMGCKG 3 cut(s) 284, 407, 1853
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 5 cut(s) 201, 1276, 1345, 1587, 2698
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 2 cut(s) 1443, 1649
MvaI CCWGG 5 cut(s) 201, 1276, 1345, 1587, 2698
MvnI CGCG 1 cut(s) 1155
MwoI GCNNNNNNNGC 8 cut(s) 326, 686, 782, 1751, 2242, 2635, 2772, 2811
NcoI CCATGG 1 cut(s) 1942
NdeI CATATG 1 cut(s) 1235
NdeII GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
NlaIV GGNNCC 6 cut(s) 67, 667, 763, 1994, 2126, 2628
NmeAIII GCCGAG 1 cut(s) 2695
NmuCI GTSAC 4 cut(s) 376, 1090, 1915, 2052
NruI TCGCGA 1 cut(s) 1155
NspI RCATGY 5 cut(s) 98, 354, 1332, 2114, 2805
PagI TCATGA 2 cut(s) 112, 1144
PciI ACATGT 1 cut(s) 1328
PctI GAATGC 2 cut(s) 1443, 1649
PdmI GAANNNNTTC 3 cut(s) 1647, 2017, 2311
PfeI GAWTC 4 cut(s) 1703, 2312, 2435, 2606
PflFI GACNNNGTC 1 cut(s) 2123
PflMI CCANNNNNTGG 3 cut(s) 703, 799, 2003
PfoI TCCNGGA 1 cut(s) 1343
PinAI ACCGGT 1 cut(s) 662
PkrI GCNGC 9 cut(s) 391, 682, 778, 862, 1747, 2044, 2047, 2361, 2510
PleI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1348, 2654
PpsI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1348, 2654
PpuMI RGGWCCY 1 cut(s) 2125
PscI ACATGT 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 2442
PsiI TTATAA 3 cut(s) 1530, 1542, 2574
Psp5II RGGWCCY 1 cut(s) 2125
Psp6I CCWGG 5 cut(s) 199, 1274, 1343, 1585, 2696
PspEI GGTNACC 1 cut(s) 277
PspGI CCWGG 5 cut(s) 199, 1274, 1343, 1585, 2696
PspN4I GGNNCC 6 cut(s) 67, 667, 763, 1994, 2126, 2628
PspPI GGNCC 5 cut(s) 875, 884, 1058, 1992, 2125
PspPPI RGGWCCY 1 cut(s) 2125
PstNI CAGNNNCTG 2 cut(s) 980, 1751
PsuI RGATCY 1 cut(s) 2452
PsyI GACNNNGTC 1 cut(s) 2123
PvuII CAGCTG 2 cut(s) 407, 1853
RruI TCGCGA 1 cut(s) 1155
RsaI GTAC 5 cut(s) 400, 1161, 1485, 2253, 2679
RsaNI GTAC 5 cut(s) 399, 1160, 1484, 2252, 2678
RseI CAYNNNNRTG 4 cut(s) 270, 423, 1329, 2007
SatI GCNGC 9 cut(s) 390, 681, 777, 861, 1746, 2043, 2046, 2360, 2509
Sau3AI GATC 8 cut(s) 130, 631, 991, 1837, 1847, 2086, 2383, 2452
Sau96I GGNCC 5 cut(s) 875, 884, 1058, 1992, 2125
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 7 cut(s) 365, 373, 571, 716, 1274, 1349, 2654
ScrFI CCNGG 5 cut(s) 201, 1276, 1345, 1587, 2698
SduI GDGCHC 1 cut(s) 2178
SfaNI GCATC 7 cut(s) 79, 192, 307, 415, 676, 1280, 1492
SfcI CTRYAG 1 cut(s) 2328
SinI GGWCC 2 cut(s) 875, 2125
SmiMI CAYNNNNRTG 4 cut(s) 270, 423, 1329, 2007
SmlI CTYRAG 3 cut(s) 134, 1479, 1987
SmoI CTYRAG 3 cut(s) 134, 1479, 1987
SsiI CCGC 3 cut(s) 282, 480, 2624
SspI AATATT 1 cut(s) 1597
SspMI CTAG 1 cut(s) 1055
StyD4I CCNGG 5 cut(s) 199, 1274, 1343, 1585, 2696
StyI CCWWGG 2 cut(s) 1553, 1942
TaaI ACNGT 7 cut(s) 838, 955, 1223, 1468, 1869, 2194, 2620
TaiI ACGT 2 cut(s) 711, 938
TaqI TCGA 2 cut(s) 2196, 2305
TatI WGTACW 3 cut(s) 398, 1159, 2677
TfiI GAWTC 4 cut(s) 1703, 2312, 2435, 2606
TscAI CASTG 9 cut(s) 38, 238, 862, 1120, 1473, 1615, 1810, 2197, 2623
TseFI GTSAC 4 cut(s) 376, 1090, 1915, 2052
TseI GCWGC 9 cut(s) 389, 680, 776, 860, 1745, 2042, 2045, 2359, 2508
Tsp45I GTSAC 4 cut(s) 376, 1090, 1915, 2052
TspDTI ATGAA 8 cut(s) 129, 1133, 1161, 1640, 1991, 2094, 2304, 2417
TspGWI ACGGA 2 cut(s) 1304, 2269
TspRI CASTG 9 cut(s) 38, 238, 862, 1120, 1473, 1615, 1810, 2197, 2623
Tth111I GACNNNGTC 1 cut(s) 2123
Van91I CCANNNNNTGG 3 cut(s) 703, 799, 2003
VpaK11BI GGWCC 2 cut(s) 875, 2125
VspI ATTAAT 1 cut(s) 2442
XapI RAATTY 5 cut(s) 44, 1148, 1263, 1349, 1933
XceI RCATGY 5 cut(s) 98, 354, 1332, 2114, 2805
XcmI CCANNNNNNNNNTGG 2 cut(s) 2446, 2617
XmiI GTMKAC 2 cut(s) 1800, 2327
XmnI GAANNNNTTC 3 cut(s) 1647, 2017, 2311
XspI CTAG 1 cut(s) 1055
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.